Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_E21
(164 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with... 46 2e-05
sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with... 46 2e-05
sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with c... 46 2e-05
sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with... 45 5e-05
sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with... 45 5e-05
sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 44 9e-05
sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 44 9e-05
sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 44 2e-04
sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 39 0.003
sp|O74345|UCP3_SCHPO UBA-domain containing protein 3 34 0.092
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
(hPLIC-1)
Length = 589
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQFDP 140
+LE ++ MGF NR+ANL+ALI T GD++AA+ R+L P
Sbjct: 550 QLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQP 588
>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQFDP 140
+LE ++ MGF NR+ANL+ALI T GD++AA+ R+L P
Sbjct: 543 QLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQP 581
>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 46.2 bits (108), Expect = 2e-05
Identities = 21/39 (53%), Positives = 30/39 (76%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQFDP 140
+LE ++ MGF NR+ANL+ALI T GD++AA+ R+L P
Sbjct: 543 QLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQP 581
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
homolog) (Chap1)
Length = 624
Score = 45.1 bits (105), Expect = 5e-05
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQFDP 140
+LE + MGF NR+ANL+ALI T GD++AA+ R+L P
Sbjct: 585 QLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQP 623
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog)
(Chap1)
Length = 638
Score = 45.1 bits (105), Expect = 5e-05
Identities = 21/39 (53%), Positives = 29/39 (74%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQFDP 140
+LE + MGF NR+ANL+ALI T GD++AA+ R+L P
Sbjct: 599 QLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQP 637
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 601
Score = 44.3 bits (103), Expect = 9e-05
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRIL 128
+LE + MGF NR+ANL+ALI T GD++AA+ R+L
Sbjct: 562 QLEQLNSMGFINREANLQALIATGGDINAAIERLL 596
>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 596
Score = 44.3 bits (103), Expect = 9e-05
Identities = 20/35 (57%), Positives = 28/35 (80%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRIL 128
+LE + MGF NR+ANL+ALI T GD++AA+ R+L
Sbjct: 557 QLEQLNSMGFINREANLQALIATGGDINAAIERLL 591
>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3
Length = 655
Score = 43.5 bits (101), Expect = 2e-04
Identities = 21/36 (58%), Positives = 27/36 (75%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQ 131
+LE + MGF NR+ANL+ALI T GDV AAV ++ Q
Sbjct: 619 QLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 654
>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3
Length = 658
Score = 39.3 bits (90), Expect = 0.003
Identities = 19/34 (55%), Positives = 25/34 (73%)
Frame = +3
Query: 24 ELETMAQMGFPNRQANLRALIETFGDVSAAVNRI 125
+LE + MGF N +ANL+ALI T GDV AAV ++
Sbjct: 622 QLEQLRAMGFLNLEANLQALIATEGDVDAAVEKL 655
>sp|O74345|UCP3_SCHPO UBA-domain containing protein 3
Length = 601
Score = 34.3 bits (77), Expect = 0.092
Identities = 16/38 (42%), Positives = 23/38 (60%)
Frame = +3
Query: 18 SSELETMAQMGFPNRQANLRALIETFGDVSAAVNRILQ 131
+ L T+ MGF + N AL ET GDV+ A+ +I+Q
Sbjct: 159 ADSLSTLHDMGFSDDSVNTHALEETNGDVTRAIEKIVQ 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,855,381
Number of Sequences: 369166
Number of extensions: 231909
Number of successful extensions: 668
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 68,354,980
effective HSP length: 27
effective length of database: 63,367,135
effective search space used: 1710912645
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)