Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_E10
(460 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P43024|CX6A1_MOUSE Cytochrome c oxidase polypeptide VIa-... 33 0.23
sp|Q45479|LSPA_BACSU Lipoprotein signal peptidase (Prolipop... 30 2.6
sp|P32799|COX13_YEAST Cytochrome c oxidase polypeptide VIa,... 28 7.5
sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium chan... 28 7.5
sp|Q05152|CAC1B_RABIT Voltage-dependent N-type calcium chan... 28 7.5
sp|Q02294|CAC1B_RAT Voltage-dependent N-type calcium channe... 28 7.5
sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium chan... 28 7.5
sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium chan... 28 9.8
sp|Q07652|CAC1E_RAT Voltage-dependent R-type calcium channe... 28 9.8
sp|Q02343|CAC1E_RABIT Voltage-dependent R-type calcium chan... 28 9.8
>sp|P43024|CX6A1_MOUSE Cytochrome c oxidase polypeptide VIa-liver, mitochondrial precursor
Length = 111
Score = 33.5 bits (75), Expect = 0.23
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +1
Query: 25 AVMIINKKLRPEGNLWNGAF--YNTGFNANYRTGKMWFYLT-FLTFPIIGVFHYIAXXXX 195
AV+ ++ RP G G ++G + + +MW LT F+ P +GV +
Sbjct: 4 AVLSASRVSRPLGRALPGLRRPMSSGAHGEEGSARMWKALTYFVALPGVGV----SMLNV 59
Query: 196 XXXXXXXXXXXPPVPKYEWCKTYT-PFPWGDGQKPLFEH 309
PP Y + T PFPWGDG LF +
Sbjct: 60 FLKSRHEEHERPPFVAYPHLRIRTKPFPWGDGNHTLFHN 98
>sp|Q45479|LSPA_BACSU Lipoprotein signal peptidase (Prolipoprotein signal peptidase)
(Signal peptidase II) (SPase II)
Length = 154
Score = 30.0 bits (66), Expect = 2.6
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 88 NTGFNANYRTGKMWFYLTFLTFPIIGVFHYI 180
NTG G+MWF+ T IIG+ +YI
Sbjct: 45 NTGAAWGILAGQMWFFYLITTAVIIGIVYYI 75
>sp|P32799|COX13_YEAST Cytochrome c oxidase polypeptide VIa, mitochondrial precursor
Length = 129
Score = 28.5 bits (62), Expect = 7.5
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 7/30 (23%)
Frame = +1
Query: 235 VPKYEWCKTYT-------PFPWGDGQKPLF 303
VP EW + Y PF WGDG K LF
Sbjct: 87 VPDSEWPRDYEFMNIRSKPFFWGDGDKTLF 116
>sp|Q00975|CAC1B_HUMAN Voltage-dependent N-type calcium channel alpha-1B subunit
(Voltage-gated calcium channel alpha subunit Cav2.2)
(Calcium channel, L type, alpha-1 polypeptide isoform 5)
(Brain calcium channel III) (BIII)
Length = 2339
Score = 28.5 bits (62), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++A++ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 300 ILFAILTVFQCITMEG--WTDILYNT----NDAAGNTWNWLYFIPLIIIGSF 345
>sp|Q05152|CAC1B_RABIT Voltage-dependent N-type calcium channel alpha-1B subunit
(Voltage-gated calcium channel alpha subunit Cav2.2)
(Calcium channel, L type, alpha-1 polypeptide isoform 5)
(Brain calcium channel III) (BIII)
Length = 2339
Score = 28.5 bits (62), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++A++ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 300 ILFAILTVFQCITMEG--WTDILYNT----NDAAGNTWNWLYFIPLIIIGSF 345
>sp|Q02294|CAC1B_RAT Voltage-dependent N-type calcium channel alpha-1B subunit
(Voltage-gated calcium channel alpha subunit Cav2.2)
(Calcium channel, L type, alpha-1 polypeptide isoform 5)
(Brain calcium channel III) (BIII)
Length = 2336
Score = 28.5 bits (62), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++A++ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 300 ILFAILTVFQCITMEG--WTDILYNT----NDAAGNTWNWLYFIPLIIIGSF 345
>sp|O55017|CAC1B_MOUSE Voltage-dependent N-type calcium channel alpha-1B subunit
(Voltage-gated calcium channel alpha subunit Cav2.2)
(Calcium channel, L type, alpha-1 polypeptide isoform 5)
(Brain calcium channel III) (BIII)
Length = 2327
Score = 28.5 bits (62), Expect = 7.5
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++A++ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 300 ILFAILTVFQCITMEG--WTDILYNT----NDAAGNTWNWLYFIPLIIIGSF 345
>sp|Q61290|CAC1E_MOUSE Voltage-dependent R-type calcium channel alpha-1E subunit
(Voltage-gated calcium channel alpha subunit Cav2.3)
(Calcium channel, L type, alpha-1 polypeptide, isoform
6) (Brain calcium channel II) (BII)
Length = 2272
Score = 28.1 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++AV+ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 296 ILFAVLTVFQCITMEG--WTTVLYNT----NDALGATWNWLYFIPLIIIGSF 341
>sp|Q07652|CAC1E_RAT Voltage-dependent R-type calcium channel alpha-1E subunit
(Voltage-gated calcium channel alpha subunit Cav2.3)
(Calcium channel, L type, alpha-1 polypeptide, isoform
6) (RBE-II) (RBE2) (Brain calcium channel II) (BII)
Length = 2222
Score = 28.1 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++AV+ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 246 ILFAVLTVFQCITMEG--WTTVLYNT----NDALGATWNWLYFIPLIIIGSF 291
>sp|Q02343|CAC1E_RABIT Voltage-dependent R-type calcium channel alpha-1E subunit
(Voltage-gated calcium channel alpha subunit Cav2.3)
(Calcium channel, L type, alpha-1 polypeptide, isoform
6) (Brain calcium channel II) (BII)
Length = 2259
Score = 28.1 bits (61), Expect = 9.8
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 16 LVYAVMIINKKLRPEGNLWNGAFYNTGFNANYRTGKMWFYLTFLTFPIIGVF 171
+++AV+ + + + EG W YNT N G W +L F+ IIG F
Sbjct: 295 ILFAVLTVFQCITMEG--WTTVLYNT----NDALGATWNWLYFIPLIIIGSF 340
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,076,609
Number of Sequences: 369166
Number of extensions: 1121703
Number of successful extensions: 2356
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2356
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2534533995
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)