Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_D21
(420 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 254 7e-68
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 254 7e-68
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 253 1e-67
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 252 2e-67
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 252 3e-67
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 251 6e-67
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 248 3e-66
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 248 3e-66
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 246 2e-65
sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 241 4e-64
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 254 bits (648), Expect = 7e-68
Identities = 122/138 (88%), Positives = 130/138 (94%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RKLR HR+ ++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 254 bits (648), Expect = 7e-68
Identities = 122/138 (88%), Positives = 131/138 (94%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RKLR HR++++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 253 bits (646), Expect = 1e-67
Identities = 122/138 (88%), Positives = 129/138 (93%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RKLR HR+ +W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 252 bits (644), Expect = 2e-67
Identities = 120/138 (86%), Positives = 132/138 (95%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSA
Sbjct: 6 GLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
AN SL+AL+KGKKERPR+
Sbjct: 126 ANTSLIALFKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 252 bits (643), Expect = 3e-67
Identities = 121/138 (87%), Positives = 132/138 (95%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
A+VSLLALYK KKERPR+
Sbjct: 126 ASVSLLALYKQKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 251 bits (640), Expect = 6e-67
Identities = 121/138 (87%), Positives = 130/138 (94%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYK KKERPR+
Sbjct: 126 ANVSLLALYKEKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 248 bits (634), Expect = 3e-66
Identities = 120/138 (86%), Positives = 130/138 (94%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
GIRT RK HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYK KKERPR+
Sbjct: 126 ANVSLLALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 248 bits (634), Expect = 3e-66
Identities = 120/138 (86%), Positives = 129/138 (93%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
GIR RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
AN SL+AL+KGKKERPR+
Sbjct: 126 ANTSLIALFKGKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 246 bits (627), Expect = 2e-65
Identities = 120/138 (86%), Positives = 129/138 (93%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RK HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYK KKERPR+
Sbjct: 126 ANVSLLALYKEKKERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
Length = 143
Score = 241 bits (615), Expect = 4e-64
Identities = 115/138 (83%), Positives = 127/138 (92%)
Frame = +2
Query: 2 GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
G+RT RKLR HR++++W DK YKKAHLGT K+NPFG ASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6 GLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSA 65
Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
IRKCVRVQLIKNGKKITAFVPNDGCLNF EENDEVLV+GFGR HAVGDIPGVRFK+V++
Sbjct: 66 IRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEM 125
Query: 362 ANVSLLALYKGKKERPRA 415
ANVSLLALYKG KERP++
Sbjct: 126 ANVSLLALYKGXKERPKS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,268,834
Number of Sequences: 369166
Number of extensions: 859051
Number of successful extensions: 3084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)