Planarian EST Database


Dr_sW_018_D21

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_018_D21
         (420 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P62267|RS23_MOUSE  40S ribosomal protein S23 >gi|54039461...   254   7e-68
sp|Q90YQ1|RS23_ICTPU  40S ribosomal protein S23                   254   7e-68
sp|Q6SA96|RS23_PIG  40S ribosomal protein S23                     253   1e-67
sp|Q19877|RS23_CAEEL  40S ribosomal protein S23                   252   2e-67
sp|Q9GRJ3|RS23_LUMRU  40S ribosomal protein S23                   252   3e-67
sp|Q86FP7|RS23_DERVA  40S ribosomal protein S23                   251   6e-67
sp|Q962Q7|RS23_SPOFR  40S ribosomal protein S23 >gi|52000789...   248   3e-66
sp|P90707|RS23_BRUMA  40S ribosomal protein S23                   248   3e-66
sp|Q8T3U2|RS23_DROME  40S ribosomal protein S23                   246   2e-65
sp|Q9DFR4|RS23_GILMI  40S ribosomal protein S23                   241   4e-64
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
 sp|P62298|RS23_CHILA 40S ribosomal protein S23
 sp|P62266|RS23_HUMAN 40S ribosomal protein S23
 sp|P62268|RS23_RAT 40S ribosomal protein S23
          Length = 143

 Score =  254 bits (648), Expect = 7e-68
 Identities = 122/138 (88%), Positives = 130/138 (94%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RKLR HR+ ++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
          Length = 143

 Score =  254 bits (648), Expect = 7e-68
 Identities = 122/138 (88%), Positives = 131/138 (94%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RKLR HR++++W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
          Length = 143

 Score =  253 bits (646), Expect = 1e-67
 Identities = 122/138 (88%), Positives = 129/138 (93%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RKLR HR+  +W DK YKKAHLGT  K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYKGKKERPR+
Sbjct: 126 ANVSLLALYKGKKERPRS 143
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
          Length = 143

 Score =  252 bits (644), Expect = 2e-67
 Identities = 120/138 (86%), Positives = 132/138 (95%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+ T RKL+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSA
Sbjct: 6   GLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           AN SL+AL+KGKKERPR+
Sbjct: 126 ANTSLIALFKGKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
          Length = 143

 Score =  252 bits (643), Expect = 3e-67
 Identities = 121/138 (87%), Positives = 132/138 (95%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RKL+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           A+VSLLALYK KKERPR+
Sbjct: 126 ASVSLLALYKQKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
          Length = 143

 Score =  251 bits (640), Expect = 6e-67
 Identities = 121/138 (87%), Positives = 130/138 (94%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RK R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKHRSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYK KKERPR+
Sbjct: 126 ANVSLLALYKEKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
 sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
          Length = 143

 Score =  248 bits (634), Expect = 3e-66
 Identities = 120/138 (86%), Positives = 130/138 (94%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           GIRT RK   HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GIRTARKHVNHRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYK KKERPR+
Sbjct: 126 ANVSLLALYKEKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
          Length = 143

 Score =  248 bits (634), Expect = 3e-66
 Identities = 120/138 (86%), Positives = 129/138 (93%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           GIR  RKL+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GIRAARKLKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           AN SL+AL+KGKKERPR+
Sbjct: 126 ANTSLIALFKGKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
          Length = 143

 Score =  246 bits (627), Expect = 2e-65
 Identities = 120/138 (86%), Positives = 129/138 (93%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RK   HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKHVNHRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKV
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKV 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYK KKERPR+
Sbjct: 126 ANVSLLALYKEKKERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
          Length = 143

 Score =  241 bits (615), Expect = 4e-64
 Identities = 115/138 (83%), Positives = 127/138 (92%)
 Frame = +2

Query: 2   GIRTGRKLRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSA 181
           G+RT RKLR HR++++W DK YKKAHLGT  K+NPFG ASHAKGIVLEKVGVEAKQPNSA
Sbjct: 6   GLRTARKLRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSA 65

Query: 182 IRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKV 361
           IRKCVRVQLIKNGKKITAFVPNDGCLNF EENDEVLV+GFGR  HAVGDIPGVRFK+V++
Sbjct: 66  IRKCVRVQLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEM 125

Query: 362 ANVSLLALYKGKKERPRA 415
           ANVSLLALYKG KERP++
Sbjct: 126 ANVSLLALYKGXKERPKS 143
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,268,834
Number of Sequences: 369166
Number of extensions: 859051
Number of successful extensions: 3084
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2852
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)