Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_D18-2
(133 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13 49 5e-06
sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13 49 5e-06
sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13 45 4e-05
sp|O74175|RL13_SCHPO 60S ribosomal protein L13 45 5e-05
sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protei... 44 1e-04
sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basi... 44 1e-04
sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13 44 1e-04
sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52) 44 2e-04
sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basi... 44 2e-04
sp|P41123|RL13_RAT 60S ribosomal protein L13 44 2e-04
>sp|Q90Z10|RL13_BRARE 60S ribosomal protein L13
Length = 211
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ I N H+HKDWQK V+T FNQPARK
Sbjct: 1 MAPSRNGMILNPHFHKDWQKRVRTWFNQPARK 32
>sp|Q90YV5|RL13_ICTPU 60S ribosomal protein L13
Length = 211
Score = 48.5 bits (114), Expect = 5e-06
Identities = 21/32 (65%), Positives = 24/32 (75%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ I N H+HKDWQK V+T FNQPARK
Sbjct: 1 MAPSRNGMILNPHFHKDWQKRVRTWFNQPARK 32
>sp|Q962U1|RL13_SPOFR 60S ribosomal protein L13
Length = 219
Score = 45.4 bits (106), Expect = 4e-05
Identities = 18/27 (66%), Positives = 22/27 (81%)
Frame = +1
Query: 52 HNQIANVHYHKDWQKMVKTNFNQPARK 132
+N I N H+HKDWQ+ VKT FNQPAR+
Sbjct: 5 NNMIPNGHFHKDWQRFVKTWFNQPARR 31
>sp|O74175|RL13_SCHPO 60S ribosomal protein L13
Length = 208
Score = 45.1 bits (105), Expect = 5e-05
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M + Q+ N H+HKDWQ+ VKT FNQP RK
Sbjct: 1 MAIHVKGQLPNAHFHKDWQRYVKTWFNQPGRK 32
>sp|P41126|RL13_DROME 60S ribosomal protein L13 (BBC1 protein homolog)
Length = 218
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/27 (70%), Positives = 21/27 (77%)
Frame = +1
Query: 52 HNQIANVHYHKDWQKMVKTNFNQPARK 132
+N I N HYHK WQ+ VKT FNQPARK
Sbjct: 5 NNMIPNQHYHKWWQRHVKTWFNQPARK 31
>sp|P41125|RL13_CHICK 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ I H+HKDWQ+ V T FNQPARK
Sbjct: 1 MAPSRNGMILKPHFHKDWQRRVATWFNQPARK 32
>sp|Q9Z313|RL13_CRIGR 60S ribosomal protein L13
Length = 211
Score = 43.9 bits (102), Expect = 1e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ I H+HKDWQ+ V T FNQPARK
Sbjct: 1 MAPSRNGMILKPHFHKDWQRRVDTWFNQPARK 32
>sp|P47963|RL13_MOUSE 60S ribosomal protein L13 (A52)
Length = 211
Score = 43.5 bits (101), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ I H+HKDWQ+ V T FNQPARK
Sbjct: 1 MAPSRNGMILKPHFHKDWQQRVDTWFNQPARK 32
>sp|P26373|RL13_HUMAN 60S ribosomal protein L13 (Breast basic conserved protein 1)
Length = 211
Score = 43.5 bits (101), Expect = 2e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ + H+HKDWQ+ V T FNQPARK
Sbjct: 1 MAPSRNGMVLKPHFHKDWQRRVATWFNQPARK 32
>sp|P41123|RL13_RAT 60S ribosomal protein L13
Length = 211
Score = 43.5 bits (101), Expect = 2e-04
Identities = 19/32 (59%), Positives = 22/32 (68%)
Frame = +1
Query: 37 MGLSRHNQIANVHYHKDWQKMVKTNFNQPARK 132
M SR+ I H+HKDWQ+ V T FNQPARK
Sbjct: 1 MAPSRNGMILKPHFHKDWQQRVDTWFNQPARK 32
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,042,024
Number of Sequences: 369166
Number of extensions: 166577
Number of successful extensions: 427
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 427
length of database: 68,354,980
effective HSP length: 17
effective length of database: 65,214,485
effective search space used: 1695576610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)