Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_D18-1
(697 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8NFU3|KAT_HUMAN KAT protein 81 2e-15
sp|P22978|HS6B_DROME Heat shock protein 67B2 67 5e-11
sp|Q10215|YAY7_SCHPO Hypothetical protein C4H3.07c in chrom... 65 1e-10
sp|P73801|Y1261_SYNY3 Hypothetical protein slr1261 37 0.050
sp|P54510|YQHL_BACSU Hypothetical protein yqhL 37 0.065
sp|Q83DV5|GLPE_COXBU Thiosulfate sulfurtransferase glpE 37 0.065
sp|Q58221|Y811_METJA Hypothetical protein MJ0811 36 0.11
sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 (AtVTI12... 33 0.72
sp|P97481|EPAS1_MOUSE Endothelial PAS domain protein 1 (EPA... 33 0.94
sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase recG 32 1.2
>sp|Q8NFU3|KAT_HUMAN KAT protein
Length = 115
Score = 81.3 bits (199), Expect = 2e-15
Identities = 39/104 (37%), Positives = 68/104 (65%)
Frame = +2
Query: 212 DLVNLIEDEKIMLVDVREKEDIEKSGLIPSAIHIPLNKLKSSLQLPSAEFKDTFGVDKPD 391
+L +L+ + L DVR +E+ +G IP A++IP+++L+S+LQ+ A F+ + +KP
Sbjct: 11 ELRSLLASGRARLFDVRSREEAA-AGTIPGALNIPVSELESALQMEPAAFQALYSAEKPK 69
Query: 392 LQSENLIFYGMKELKGTSACELAYSLGFKKARSFPGGFKEWSEK 523
L+ E+L+F+ +G A +LA SLG+ AR++ G ++EW EK
Sbjct: 70 LEDEHLVFFCQMGKRGLQATQLARSLGYTGARNYAGAYREWLEK 113
>sp|P22978|HS6B_DROME Heat shock protein 67B2
Length = 111
Score = 67.0 bits (162), Expect = 5e-11
Identities = 33/94 (35%), Positives = 59/94 (62%)
Frame = +2
Query: 242 IMLVDVREKEDIEKSGLIPSAIHIPLNKLKSSLQLPSAEFKDTFGVDKPDLQSENLIFYG 421
+ L+DVR KE+++++G IP++I+IPL++L +L L + FK+ +G KP+ QS +IF
Sbjct: 16 VYLIDVRRKEELQQTGFIPASINIPLDELDKALNLDGSAFKNKYGRSKPEKQSP-IIFTC 74
Query: 422 MKELKGTSACELAYSLGFKKARSFPGGFKEWSEK 523
+ A ++A S G+ + G + EW++K
Sbjct: 75 RSGNRVLEAEKIAKSQGYSNVVIYKGSWNEWAQK 108
>sp|Q10215|YAY7_SCHPO Hypothetical protein C4H3.07c in chromosome I
Length = 171
Score = 65.5 bits (158), Expect = 1e-10
Identities = 30/97 (30%), Positives = 59/97 (60%)
Frame = +2
Query: 233 DEKIMLVDVREKEDIEKSGLIPSAIHIPLNKLKSSLQLPSAEFKDTFGVDKPDLQSENLI 412
D+ +L+DVRE ++ K G I ++ ++P+ K++ +++L EF T+G KP + +N++
Sbjct: 73 DKSTVLIDVREPDEF-KQGAIETSYNLPVGKIEEAMKLSDEEFSKTYGFSKPVFE-DNVV 130
Query: 413 FYGMKELKGTSACELAYSLGFKKARSFPGGFKEWSEK 523
Y + T+A ++ LG+K ++ G + EWS+K
Sbjct: 131 VYCRSGRRSTTASDILTKLGYKNIGNYTGSWLEWSDK 167
>sp|P73801|Y1261_SYNY3 Hypothetical protein slr1261
Length = 179
Score = 37.0 bits (84), Expect = 0.050
Identities = 31/109 (28%), Positives = 46/109 (42%)
Frame = +2
Query: 215 LVNLIEDEKIMLVDVREKEDIEKSGLIPSAIHIPLNKLKSSLQLPSAEFKDTFGVDKPDL 394
L L + + ++LVDVRE + I A +PL++L S QLP AE K T
Sbjct: 16 LQQLRQQDAVILVDVREPLEFVGEH-ITDAYSLPLSRLNPS-QLPQAEGKTT-------- 65
Query: 395 QSENLIFYGMKELKGTSACELAYSLGFKKARSFPGGFKEWSEKGLKIIK 541
+ Y + +A + S G + GG W + GL +K
Sbjct: 66 -----VLYCQSSNRSGNALQQLRSAGVEGIIHLEGGLLAWKQAGLPTVK 109
>sp|P54510|YQHL_BACSU Hypothetical protein yqhL
Length = 126
Score = 36.6 bits (83), Expect = 0.065
Identities = 28/95 (29%), Positives = 41/95 (43%)
Frame = +2
Query: 239 KIMLVDVREKEDIEKSGLIPSAIHIPLNKLKSSLQLPSAEFKDTFGVDKPDLQSENLIFY 418
K L+DVRE + E G I A +IPL++LK K+ DKP + Y
Sbjct: 42 KAQLIDVREPNEFE-GGHILGARNIPLSQLKQR--------KNEIRTDKP------VYLY 86
Query: 419 GMKELKGTSACELAYSLGFKKARSFPGGFKEWSEK 523
++ A + G + + GGFK+W K
Sbjct: 87 CQNSVRSGRAAQTLRKNGCTEIYNLKGGFKKWGGK 121
>sp|Q83DV5|GLPE_COXBU Thiosulfate sulfurtransferase glpE
Length = 107
Score = 36.6 bits (83), Expect = 0.065
Identities = 24/97 (24%), Positives = 46/97 (47%)
Frame = +2
Query: 224 LIEDEKIMLVDVREKEDIEKSGLIPSAIHIPLNKLKSSLQLPSAEFKDTFGVDKPDLQSE 403
L++ I++ DVR+++ E+ I +A+H+ + KL+ E+ + +KP
Sbjct: 14 LVKKRDIVIADVRDQDSYEEEH-IANALHLSMAKLQ--------EYSEKADKEKP----- 59
Query: 404 NLIFYGMKELKGTSACELAYSLGFKKARSFPGGFKEW 514
++ Y + S + GFK+ S GGF+ W
Sbjct: 60 -VLVYCYHGISSQSVAQHLVEQGFKEVYSLIGGFETW 95
>sp|Q58221|Y811_METJA Hypothetical protein MJ0811
Length = 439
Score = 35.8 bits (81), Expect = 0.11
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 6/101 (5%)
Frame = +2
Query: 11 RIALKLFSNPIVYKTVK------ITAISSFKSSRVQYFSSNVKEAIYPDKKIIDSIKLEP 172
++A K+ N + + VK + AI+ +KS +++++S IY K D L P
Sbjct: 180 KLADKILQNKKIREIVKKLGKLRLLAINEYKS-KIKHYSGE----IYSTKIGRDLKHLLP 234
Query: 173 EIKINKRNEILCEDLVNLIEDEKIMLVDVREKEDIEKSGLI 295
+ +N +EIL D + D+K+++ D++ K + +K +I
Sbjct: 235 KEIVNLSDEILYYDFLRRFVDKKLLIYDIQNKLEKQKGPII 275
>sp|Q9SEL5|VTI12_ARATH Vesicle transport v-SNARE 12 (AtVTI12) (Vesicle transport v-SNARE
protein VTI1b) (Vesicle soluble NSF attachment protein
receptor VTI1b) (AtVTI1b)
Length = 223
Score = 33.1 bits (74), Expect = 0.72
Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +2
Query: 203 LCEDLVNLIEDEKIMLVDVREKEDIEKSGLIPSAIHIPLNKL---KSSLQLPSAEFKDTF 373
+ E + + I++ +++ K D+E L PSA + L+KL KS L EFK
Sbjct: 39 IAEQIKSGIDEADVLI----RKMDLEARSLQPSAKAVCLSKLREYKSDLNQLKKEFKRVS 94
Query: 374 GVDKPDLQSENLIFYGMKELKGTSA 448
D E L+ GM +L SA
Sbjct: 95 SADAKPSSREELMESGMADLHAVSA 119
>sp|P97481|EPAS1_MOUSE Endothelial PAS domain protein 1 (EPAS-1) (Hypoxia-inducible factor
2 alpha) (HIF-2 alpha) (HIF2 alpha) (HIF-1 alpha-like
factor) (MHLF) (HIF-related factor) (HRF)
Length = 874
Score = 32.7 bits (73), Expect = 0.94
Identities = 24/69 (34%), Positives = 31/69 (44%)
Frame = +2
Query: 323 KLKSSLQLPSAEFKDTFGVDKPDLQSENLIFYGMKELKGTSACELAYSLGFKKARSFPGG 502
KLK L+ F+DT G D P S +L++ MK L G C L A P
Sbjct: 711 KLKRQLEYEEQAFQDTSGGDPPGTSSSHLMWKRMKSLMG-GTCPLMPDKTI-SANMAPDE 768
Query: 503 FKEWSEKGL 529
F + S +GL
Sbjct: 769 FTQKSMRGL 777
>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase recG
Length = 682
Score = 32.3 bits (72), Expect = 1.2
Identities = 28/116 (24%), Positives = 55/116 (47%), Gaps = 8/116 (6%)
Frame = +2
Query: 2 MLSRIALK--LFSNPIVYKTVKITAISSFKSSRVQYFSS-NVKEAIYPDKKIIDSIKLEP 172
M++ IA+K F+ P + K +++ +I + K + N + D+K + LEP
Sbjct: 90 MINHIAVKCVFFNQPYLKKKLELNSIVTIKGKWNRNKQEINGNRIFFKDQKNQEDTHLEP 149
Query: 173 EIKINK--RNEILCEDLVNLIEDEKI---MLVDVREKEDIEKSGLIPSAIHIPLNK 325
+I + + + L +++ + D I + D+REK +E +H P+NK
Sbjct: 150 IYRIKEGIKQKQLRDNIRQALSDVTIHEWLTDDLREKYKLETLAYTIQTLHHPINK 205
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,875,521
Number of Sequences: 369166
Number of extensions: 890331
Number of successful extensions: 2864
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2861
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6024953540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)