Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_D17
(609 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O88767|PARK7_RAT Protein DJ-1 (Contraception-associated ... 119 5e-27
sp|Q99LX0|PARK7_MOUSE Protein DJ-1 119 8e-27
sp|Q99497|PARK7_HUMAN Protein DJ-1 (Oncogene DJ1) 117 2e-26
sp|Q10356|YDB3_SCHPO Hypothetical protein C22E12.03c in chr... 94 2e-19
sp|Q46948|THIJ_ECOLI Protein thiJ 91 3e-18
sp|P55880|THIJ_SALTY Protein thiJ 87 3e-17
sp|O06006|YRAA_BACSU Hypothetical protein yraA 85 2e-16
sp|Q58377|Y967_METJA Hypothetical protein MJ0967 77 3e-14
sp|Q5HN59|Y1413_STAEQ Hypothetical protein SERP1413 77 3e-14
sp|Q49YS0|Y918_STAS1 Hypothetical protein SSP0918 76 8e-14
>sp|O88767|PARK7_RAT Protein DJ-1 (Contraception-associated protein 1) (CAP1 protein)
(Fertility protein SP22)
Length = 189
Score = 119 bits (299), Expect = 5e-27
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 VEVVATSDVLSRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LYDALIIPGGM 177
+E V D++ R GI V + G+ G V+ + VI + SL + KT YD +++PGG
Sbjct: 17 METVIPVDIMRRAGIKVTVAGLAGKDPVQCSRDVVICPDTSLEEAKTQGPYDVVVLPGGN 76
Query: 178 GGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQ-LTS 354
G + LS + VKE+L + K +I AICAGP L A V G +TS+P KD+ +
Sbjct: 77 LGAQNLSESALVKEILKEQENRKGLIAAICAGPTALLAHEVGFGCKVTSHPLAKDKMMNG 136
Query: 355 ADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLVK 510
+ Y Y E RV D ++TSRGPGT+ EF L +VE L G D + +++K
Sbjct: 137 SHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALSGKDMANQVKAPLVLK 188
>sp|Q99LX0|PARK7_MOUSE Protein DJ-1
Length = 189
Score = 119 bits (297), Expect = 8e-27
Identities = 67/172 (38%), Positives = 97/172 (56%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 VEVVATSDVLSRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LYDALIIPGGM 177
+E V DV+ R GI V + G+ G V+ + +I + SL D KT YD +++PGG
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVMICPDTSLEDAKTQGPYDVVVLPGGN 76
Query: 178 GGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQ-LTS 354
G + LS + VKE+L + K +I AICAGP L A V G +T++P KD+ +
Sbjct: 77 LGAQNLSESPMVKEILKEQESRKGLIAAICAGPTALLAHEVGFGCKVTTHPLAKDKMMNG 136
Query: 355 ADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLVK 510
+ Y Y E RV D ++TSRGPGT+ EF L +VE L G D + +++K
Sbjct: 137 SHYSYSESRVEKDGLILTSRGPGTSFEFALAIVEALVGKDMANQVKAPLVLK 188
>sp|Q99497|PARK7_HUMAN Protein DJ-1 (Oncogene DJ1)
Length = 189
Score = 117 bits (294), Expect = 2e-26
Identities = 66/172 (38%), Positives = 96/172 (55%), Gaps = 2/172 (1%)
Frame = +1
Query: 1 VEVVATSDVLSRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-LYDALIIPGGM 177
+E V DV+ R GI V + G+ G V+ + VI + SL D K YD +++PGG
Sbjct: 17 METVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGN 76
Query: 178 GGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQ-LTS 354
G + LS + VKE+L + K +I AICAGP L A + GS +T++P KD+ +
Sbjct: 77 LGAQNLSESAAVKEILKEQENRKGLIAAICAGPTALLAHEIGFGSKVTTHPLAKDKMMNG 136
Query: 355 ADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLVK 510
Y Y E RV D ++TSRGPGT+ EF L +VE L G + + +++K
Sbjct: 137 GHYTYSENRVEKDGLILTSRGPGTSFEFALAIVEALNGKEVAAQVKAPLVLK 188
>sp|Q10356|YDB3_SCHPO Hypothetical protein C22E12.03c in chromosome I
Length = 191
Score = 94.4 bits (233), Expect = 2e-19
Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Frame = +1
Query: 31 SRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTT-----LYDALIIPGGMGGVKAL 195
+ + ID V VG VK++ + +S ++ + YD IIPGG G K L
Sbjct: 27 AEIPIDSVYVGENKDRLVKMSRDVEMYANRSYKEIPSADDFAKQYDIAIIPGGGLGAKTL 86
Query: 196 SANENVKEMLYN-HQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSADYKYK 372
S V++++ ++K K IG ICAG L G+ +T +PSV+ QL YKY
Sbjct: 87 STTPFVQQVVKEFYKKPNKWIGMICAGTLTAKTSGLP-NKQITGHPSVRGQLEEGGYKYL 145
Query: 373 EERVVVDRNLVTSRGPGTAVEFGLKLVEVLKGAD 474
++ VV++ NL+TS+GPGTA+ FGLKL+E + D
Sbjct: 146 DQPVVLEENLITSQGPGTAMLFGLKLLEQVASKD 179
>sp|Q46948|THIJ_ECOLI Protein thiJ
Length = 196
Score = 90.5 bits (223), Expect = 3e-18
Identities = 51/173 (29%), Positives = 98/173 (56%), Gaps = 5/173 (2%)
Frame = +1
Query: 4 EVVATSDVLSRVGIDVVIVGMEGSGNVKL--AHKTVIVVEKSLADVKTTLYDALIIPGGM 177
E V T D+L R GI V + GN+ + + ++ + L +V YD +++PGG+
Sbjct: 17 EAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGI 76
Query: 178 GGVKALSANENVKEMLYNHQKNKKVIGAICAGPL-VLSAFGVAAGSTLTSYPSVKDQLTS 354
G + + + E + ++ +++ AICA P VL + +T +P++KD++ +
Sbjct: 77 KGAECFRDSTLLVETVKQFHRSGRIVAAICAAPATVLVPHDIFPIGNMTGFPTLKDKIPA 136
Query: 355 ADYKYKEERVVVDRN--LVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 507
++ ++RVV D L+TS+GPGTA++FGLK++++L G + +A Q+++
Sbjct: 137 E--QWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLVGREKAHEVASQLVM 187
>sp|P55880|THIJ_SALTY Protein thiJ
Length = 196
Score = 87.0 bits (214), Expect = 3e-17
Identities = 50/173 (28%), Positives = 97/173 (56%), Gaps = 5/173 (2%)
Frame = +1
Query: 4 EVVATSDVLSRVGIDVVIVGMEGSGNVKL--AHKTVIVVEKSLADVKTTLYDALIIPGGM 177
E V T D+L R GI V + GN+ + + ++ + L +V YD +++PGG+
Sbjct: 17 EAVTTIDLLVRGGIHVTTASVASDGNLTIVCSRGVKLLADAPLVEVADGDYDIIVLPGGI 76
Query: 178 GGVKALSANENVKEMLYNHQKNKKVIGAICAGPL-VLSAFGVAAGSTLTSYPSVKDQLTS 354
G + + + E + ++ +++ AICA VL + +T +P++KD++ +
Sbjct: 77 KGAECFRDSPLLVETVKQFHRSGRIVAAICAAAATVLVPHDIFPIGNMTGFPALKDKIPA 136
Query: 355 ADYKYKEERVVVDRN--LVTSRGPGTAVEFGLKLVEVLKGADAVKGLAEQMLV 507
++ ++RVV D L+TS+GPGTA++FGLK++++L G + +A Q+++
Sbjct: 137 E--QWLDKRVVWDARVKLLTSQGPGTAIDFGLKIIDLLAGREKAHEVASQLVM 187
>sp|O06006|YRAA_BACSU Hypothetical protein yraA
Length = 169
Score = 84.7 bits (208), Expect = 2e-16
Identities = 50/155 (32%), Positives = 77/155 (49%)
Frame = +1
Query: 1 VEVVATSDVLSRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYDALIIPGGMG 180
+E + G VV + +E V H + ++K+++DV + +DAL+IPGG
Sbjct: 16 IEYTSPVKAYEEAGYSVVAIDLEAGKEVTGKHGEKVKIDKAISDVDASDFDALLIPGGFS 75
Query: 181 GVKALSANENVKEMLYNHQKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSAD 360
L A++ E +NKK + AIC GP VL + G +T Y S++ L +A
Sbjct: 76 P-DLLRADDRPGEFAKAFVENKKPVFAICHGPQVLIDTDLLKGKDITGYRSIRKDLINAG 134
Query: 361 YKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLK 465
YK+ VVV N+VTSR P F + + +LK
Sbjct: 135 ANYKDAEVVVSHNIVTSRTPDDLEAFNRESLNLLK 169
>sp|Q58377|Y967_METJA Hypothetical protein MJ0967
Length = 205
Score = 77.4 bits (189), Expect = 3e-14
Identities = 42/122 (34%), Positives = 71/122 (58%), Gaps = 2/122 (1%)
Frame = +1
Query: 106 IVVEKSLADVKTTLYDALIIPGGMGGVKALSANENVKEMLYNHQKNKKVIGAICAGPLVL 285
I VEK++ DV Y A++I GG+G + L N + E++ KV+ AIC P+VL
Sbjct: 80 ITVEKTIYDVNPDDYVAIVIVGGIGSKEYLWNNTKLIELVKEFYNKNKVVSAICLSPVVL 139
Query: 286 SAFGVAAGSTLTSYPSVK--DQLTSADYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEV 459
+ G+ G T YP+ + ++L A Y++ VVVD N++T++ P A FGL++++
Sbjct: 140 ARAGILKGKKATVYPAPEAIEELKKAGAIYEDRGVVVDGNVITAKSPDYARLFGLEVLKA 199
Query: 460 LK 465
++
Sbjct: 200 IE 201
>sp|Q5HN59|Y1413_STAEQ Hypothetical protein SERP1413
Length = 172
Score = 77.0 bits (188), Expect = 3e-14
Identities = 50/156 (32%), Positives = 75/156 (48%), Gaps = 1/156 (0%)
Frame = +1
Query: 1 VEVVATSDVLSRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYDALIIPGGMG 180
+E+ + + L G + ++G + V H + V+ S+AD K YDAL+IPGG
Sbjct: 16 IELTSPKEALENAGFETEVIGDTANHEVVGKHGEKVTVDVSIADAKPENYDALLIPGGFS 75
Query: 181 GVKALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSA 357
E + KN AIC GPLVL G T+T +V+ L++A
Sbjct: 76 PDHLRGDEEGRYGTFAKYFTKNDVPTFAICHGPLVLVDTDDLKGRTITGVINVRKDLSNA 135
Query: 358 DYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVLK 465
+E VVVD N+VTSR P +F ++V+ L+
Sbjct: 136 GANVVDESVVVDNNIVTSRVPDDLDDFNREIVKKLE 171
>sp|Q49YS0|Y918_STAS1 Hypothetical protein SSP0918
Length = 172
Score = 75.9 bits (185), Expect = 8e-14
Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Frame = +1
Query: 1 VEVVATSDVLSRVGIDVVIVGMEGSGNVKLAHKTVIVVEKSLADVKTTLYDALIIPGGMG 180
+E+ + + + G + V++G + + V H T + V+ S+AD K +D L+IPGG
Sbjct: 16 IELTSPKEAIEEAGHETVVIGDQANSEVVGKHGTKVAVDVSIADAKPEDFDGLLIPGGFS 75
Query: 181 GVKALSANENVKEMLYNH-QKNKKVIGAICAGPLVLSAFGVAAGSTLTSYPSVKDQLTSA 357
E + KN AIC GP +L G TLT+ +V+ L +A
Sbjct: 76 PDHLRGDAEGRYGTFAKYFTKNDVPAFAICHGPQILIDTDDLNGRTLTAVLNVRKDLANA 135
Query: 358 DYKYKEERVVVDRNLVTSRGPGTAVEFGLKLVEVL 462
+ +E VVVD+N+VTSR P +F ++V L
Sbjct: 136 GAQVVDESVVVDKNIVTSRTPDDLDDFNREIVNQL 170
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,373,744
Number of Sequences: 369166
Number of extensions: 1161806
Number of successful extensions: 3632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3611
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4748907085
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)