Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_D16
(727 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q14919|DRAP1_HUMAN Dr1-associated corepressor (Dr1-assoc... 82 1e-15
sp|Q9D6N5|DRAP1_MOUSE Dr1-associated corepressor (Dr1-assoc... 82 1e-15
sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C (DNA ... 66 8e-11
sp|Q10315|YD63_SCHPO Hypothetical protein C17G8.03c in chro... 64 5e-10
sp|P40096|NCB1_YEAST Class 2 transcription repressor (NC2) 56 1e-07
sp|Q02516|HAP5_YEAST Transcriptional activator HAP5 40 0.005
sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit... 38 0.024
sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit... 38 0.024
sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit g... 38 0.024
sp|Q5RA23|NFYC_PONPY Nuclear transcription factor Y subunit... 38 0.024
>sp|Q14919|DRAP1_HUMAN Dr1-associated corepressor (Dr1-associated protein 1) (Negative
co-factor 2 alpha) (NC2 alpha)
Length = 205
Score = 82.0 bits (201), Expect = 1e-15
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +1
Query: 52 MPTKRK-FTARFPTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSR 228
MP+K+K + ARFP A+IK+IMQ DE++GK++A VP ++S ALE + L+ KA ++ SR
Sbjct: 1 MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 60
Query: 229 NSRTVTPSHLKQVXXXXXXXXXXXXLVRKIP 321
N++T+T SHLKQ LV +P
Sbjct: 61 NAKTMTTSHLKQCIELEQQFDFLKDLVASVP 91
>sp|Q9D6N5|DRAP1_MOUSE Dr1-associated corepressor (Dr1-associated protein 1) (Negative
co-factor 2 alpha) (NC2 alpha)
Length = 205
Score = 82.0 bits (201), Expect = 1e-15
Identities = 41/91 (45%), Positives = 60/91 (65%), Gaps = 1/91 (1%)
Frame = +1
Query: 52 MPTKRK-FTARFPTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSR 228
MP+K+K + ARFP A+IK+IMQ DE++GK++A VP ++S ALE + L+ KA ++ SR
Sbjct: 1 MPSKKKKYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSR 60
Query: 229 NSRTVTPSHLKQVXXXXXXXXXXXXLVRKIP 321
N++T+T SHLKQ LV +P
Sbjct: 61 NAKTMTTSHLKQCIELEQQFDFLKDLVASVP 91
>sp|Q6C6M5|DPB3_YARLI DNA polymerase epsilon subunit C (DNA polymerase II subunit C)
Length = 114
Score = 66.2 bits (160), Expect = 8e-11
Identities = 33/86 (38%), Positives = 49/86 (56%)
Frame = +1
Query: 64 RKFTARFPTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTV 243
R+ RFP A+IK++MQ D+D+GK++ P+ V+ ALE + L+ + A RNS+ V
Sbjct: 6 REIKTRFPVARIKKLMQSDDDIGKVAQATPTAVAKALELFMISLIEETCNQARMRNSKRV 65
Query: 244 TPSHLKQVXXXXXXXXXXXXLVRKIP 321
+PSHLKQ +V K P
Sbjct: 66 SPSHLKQAVLETEQFDFLQDIVSKHP 91
>sp|Q10315|YD63_SCHPO Hypothetical protein C17G8.03c in chromosome I
Length = 199
Score = 63.5 bits (153), Expect = 5e-10
Identities = 31/89 (34%), Positives = 50/89 (56%)
Frame = +1
Query: 76 ARFPTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTVTPSH 255
+RFP A+IK+IMQ D+DVGK++ P ++S ALE + ++ ++ + ++ VT SH
Sbjct: 22 SRFPVARIKKIMQADQDVGKVAQVTPVIMSKALELFMQSIIQESCKQTRLHQAKRVTVSH 81
Query: 256 LKQVXXXXXXXXXXXXLVRKIPILKPMKA 342
LK +V K+P P+KA
Sbjct: 82 LKHAVQSVEQFDFLQDIVEKVPDAPPIKA 110
>sp|P40096|NCB1_YEAST Class 2 transcription repressor (NC2)
Length = 142
Score = 55.8 bits (133), Expect = 1e-07
Identities = 26/66 (39%), Positives = 41/66 (62%)
Frame = +1
Query: 67 KFTARFPTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTVT 246
+ FP AK+K+IMQ DED+GK+S P + +LE I+ LV K+ E+A + ++ +T
Sbjct: 48 RIKTHFPPAKVKKIMQTDEDIGKVSQATPVIAGRSLEFFIALLVKKSGEMARGQGTKRIT 107
Query: 247 PSHLKQ 264
LK+
Sbjct: 108 AEILKK 113
>sp|Q02516|HAP5_YEAST Transcriptional activator HAP5
Length = 242
Score = 40.4 bits (93), Expect = 0.005
Identities = 20/60 (33%), Positives = 36/60 (60%)
Frame = +1
Query: 85 PTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTVTPSHLKQ 264
P A+I+++M+ DEDV ISA P + + A E I++L +A+ +A RT+ + + +
Sbjct: 161 PFARIRKVMKTDEDVKMISAEAPIIFAKACEIFITELTMRAWCVAERNKRRTLQKADIAE 220
>sp|Q13952|NFYC_HUMAN Nuclear transcription factor Y subunit gamma (Nuclear transcription
factor Y subunit C) (NF-YC) (CAAT-box DNA-binding
protein subunit C) (Transactivator HSM-1/2)
Length = 458
Score = 38.1 bits (87), Expect = 0.024
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 85 PTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTV 243
P A+IK+IM++DEDV ISA P + + A + I++L +A+ RT+
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTL 96
>sp|P70353|NFYC_MOUSE Nuclear transcription factor Y subunit gamma (Nuclear transcription
factor Y subunit C) (NF-YC) (CAAT-box DNA-binding
protein subunit C)
Length = 335
Score = 38.1 bits (87), Expect = 0.024
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 85 PTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTV 243
P A+IK+IM++DEDV ISA P + + A + I++L +A+ RT+
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTL 96
>sp|Q62725|NFYC_RAT Nuclear transcription factor Y subunit gamma (Nuclear transcription
factor Y subunit C) (NF-YC) (CAAT-box DNA-binding
protein subunit C) (CCAAT-binding transcription factor
subunit C) (CBF-C)
Length = 335
Score = 38.1 bits (87), Expect = 0.024
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 85 PTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTV 243
P A+IK+IM++DEDV ISA P + + A + I++L +A+ RT+
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTL 96
>sp|Q5RA23|NFYC_PONPY Nuclear transcription factor Y subunit gamma (Nuclear transcription
factor Y subunit C) (NF-YC) (CAAT-box DNA-binding
protein subunit C)
Length = 335
Score = 38.1 bits (87), Expect = 0.024
Identities = 20/53 (37%), Positives = 32/53 (60%)
Frame = +1
Query: 85 PTAKIKRIMQVDEDVGKISATVPSVVSCALETCISQLVTKAYELALSRNSRTV 243
P A+IK+IM++DEDV ISA P + + A + I++L +A+ RT+
Sbjct: 44 PLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTL 96
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,137,276
Number of Sequences: 369166
Number of extensions: 1479126
Number of successful extensions: 4775
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4768
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6510836890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)