Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_C20
(899 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q5AFT2|GPI11_CANAL Glycosylphosphatidylinositol anchor b... 33 1.1
sp|Q8SUI0|Y8K6_ENCCU Hypothetical protein ECU08_2060 32 1.9
sp|P41892|CDC7_SCHPO Cell division control protein 7 32 3.2
sp|P49657|MNB_DROME Serine/threonine-protein kinase minibrain 31 4.1
sp|Q58473|Y1073_METJA Putative RIO-type serine/threonine-pr... 31 4.1
sp|Q9Y463|DYR1B_HUMAN Dual specificity tyrosine-phosphoryla... 31 5.4
sp|Q13627|DYR1A_HUMAN Dual specificity tyrosine-phosphoryla... 31 5.4
sp|Q61214|DYR1A_MOUSE Dual specificity tyrosine-phosphoryla... 31 5.4
sp|P38742|YHC3_YEAST Hypothetical 130.0 kDa protein in SNF6... 31 5.4
sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylati... 31 5.4
>sp|Q5AFT2|GPI11_CANAL Glycosylphosphatidylinositol anchor biosynthesis protein 11
Length = 265
Score = 33.1 bits (74), Expect = 1.1
Identities = 17/47 (36%), Positives = 30/47 (63%), Gaps = 5/47 (10%)
Frame = +3
Query: 573 IFIPIILTIPMFILAILMG--LHNLQQATISL*LH---LIMKPFLVI 698
IF+ I+L++P+F++ ILMG ++ T+ L LH LI P +++
Sbjct: 137 IFVSIVLSLPLFVVIILMGAPVYKYSLKTLYLSLHLSQLIFNPLIIL 183
>sp|Q8SUI0|Y8K6_ENCCU Hypothetical protein ECU08_2060
Length = 263
Score = 32.3 bits (72), Expect = 1.9
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Frame = +3
Query: 378 EDVLVGILIYLIRKIKHLILVTTVKISSLNVHMCM------NGDL*KVIILLSMMDITNL 539
ED+L IL YL+ +L+L T IS L++ + + DL ++L M +T L
Sbjct: 89 EDILYNILYYLL----NLLLTTFSIISILSIIALIINRRENDDDLFFFSVILPSMPLTYL 144
Query: 540 LSLNCRRLKRDI-FIP--IILTIPMFILAILMGL 632
LS +CR + I FI I + I + IL+ L+ L
Sbjct: 145 LSTSCRLVPGQIGFIDTGINIFIDILILSCLVSL 178
>sp|P41892|CDC7_SCHPO Cell division control protein 7
Length = 1062
Score = 31.6 bits (70), Expect = 3.2
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 638 FTTSNNFIVASSNNETILGHCGLQTVVSIYNSIMTPIMNEDNA--LSRLLEMNDSHINLN 811
F + ASS + + HCGL VV+ N ++ ++ A L + L++ IN +
Sbjct: 981 FQIMKSMCEASSQSVAYIAHCGLPDVVANLNQTSDSVLVKELAKDLLKYLKVPQGPINEH 1040
Query: 812 KSKINLPN 835
KS I+ P+
Sbjct: 1041 KSPISKPH 1048
>sp|P49657|MNB_DROME Serine/threonine-protein kinase minibrain
Length = 908
Score = 31.2 bits (69), Expect = 4.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 2 YDPEKRIKPIESLAHNFFRRPTPTTANST 88
+DP+ R+ P +L HNFF+R N++
Sbjct: 467 FDPKTRVTPYYALQHNFFKRTADEATNTS 495
>sp|Q58473|Y1073_METJA Putative RIO-type serine/threonine-protein kinase MJ1073
Length = 270
Score = 31.2 bits (69), Expect = 4.1
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +2
Query: 212 PSTRFTRNAKYSQQSSLQNLPTNNQFGYVIRSQHPY-VNINNSDAQCANTNV 364
P R AK ++ L L N+FG+V+RS + Y V++ DA N V
Sbjct: 8 PLDEIVRKAKMPEKDVLYRLKRLNKFGFVVRSTYGYAVSMGGYDALAINAFV 59
>sp|Q9Y463|DYR1B_HUMAN Dual specificity tyrosine-phosphorylation regulated kinase 1B (Mirk
protein kinase) (Minibrain-related kinase)
Length = 629
Score = 30.8 bits (68), Expect = 5.4
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 2 YDPEKRIKPIESLAHNFFRRPTPTTANS 85
Y+P RI P+ +L H FFRR N+
Sbjct: 414 YEPAARISPLGALQHGFFRRTADEATNT 441
>sp|Q13627|DYR1A_HUMAN Dual specificity tyrosine-phosphorylation regulated kinase 1A
(Protein kinase minibrain homolog) (MNBH) (HP86) (Dual
specificity YAK1-related kinase)
Length = 763
Score = 30.8 bits (68), Expect = 5.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 2 YDPEKRIKPIESLAHNFFRRPT---PTTANSTDICP 100
YDP+ RI+P +L H+FF++ T+NS P
Sbjct: 462 YDPKTRIQPYYALQHSFFKKTADEGTNTSNSVSTSP 497
>sp|Q61214|DYR1A_MOUSE Dual specificity tyrosine-phosphorylation regulated kinase 1A
(Protein kinase minibrain homolog) (MNBH) (MP86) (Dual
specificity YAK1-related kinase)
Length = 763
Score = 30.8 bits (68), Expect = 5.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 2 YDPEKRIKPIESLAHNFFRRPT---PTTANSTDICP 100
YDP+ RI+P +L H+FF++ T+NS P
Sbjct: 462 YDPKTRIQPYYALQHSFFKKTADEGTNTSNSVSTSP 497
>sp|P38742|YHC3_YEAST Hypothetical 130.0 kDa protein in SNF6-SPO11 intergenic region
Length = 1146
Score = 30.8 bits (68), Expect = 5.4
Identities = 20/72 (27%), Positives = 30/72 (41%)
Frame = +2
Query: 623 NGPSQFTTSNNFIVASSNNETILGHCGLQTVVSIYNSIMTPIMNEDNALSRLLEMNDSHI 802
N +QF+ +NN I NN GHCG V +DN + + ND +
Sbjct: 696 NDQAQFSDTNNNIYRFGNNINSTGHCGAANVDD----------GDDNESNYYCDDNDDLL 745
Query: 803 NLNKSKINLPNS 838
N ++ PN+
Sbjct: 746 NYALLLLDEPNN 757
>sp|Q63470|DYR1A_RAT Dual specificity tyrosine-phosphorylation regulated kinase 1A
(Protein kinase minibrain homolog) (MNBH) (RP86) (Dual
specificity YAK1-related kinase)
Length = 763
Score = 30.8 bits (68), Expect = 5.4
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Frame = +2
Query: 2 YDPEKRIKPIESLAHNFFRRPT---PTTANSTDICP 100
YDP+ RI+P +L H+FF++ T+NS P
Sbjct: 462 YDPKTRIQPYYALQHSFFKKTADEGTNTSNSVSTSP 497
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,678,586
Number of Sequences: 369166
Number of extensions: 1976405
Number of successful extensions: 5070
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5068
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)