Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_C16
(461 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b56... 103 2e-22
sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b56... 101 7e-22
sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b56... 101 7e-22
sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b56... 94 2e-19
sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b56... 69 7e-12
sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b56... 67 2e-11
sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b55... 56 4e-08
sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b55... 55 8e-08
sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b55... 53 3e-07
sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b56... 51 1e-06
>sp|Q9CZB0|C560_MOUSE Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 103 bits (257), Expect = 2e-22
Identities = 49/119 (41%), Positives = 71/119 (59%)
Frame = +3
Query: 3 EKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHY 182
+KN RP SPHL IYK LPM S+ HRGSGIA++ G A G++ + +
Sbjct: 43 KKNTSSNRPLSPHLTIYKWSLPMALSVCHRGSGIALSGGVSLFGLSALLLPGNFESYLMF 102
Query: 183 LSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 359
+ SL LGP +I+ AK ++ +PL++H NG+RHL +D KG IP +G + L+V+
Sbjct: 103 VKSLCLGPTLIYSAKFVLVFPLMYHSLNGIRHLLWDLGKGLAIPQVWLSGVAVVVLAVL 161
>sp|Q99643|C560_HUMAN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
(Succinate-ubiquinone oxidoreductase cytochrome B large
subunit) (CYBL)
Length = 169
Score = 101 bits (252), Expect = 7e-22
Identities = 48/118 (40%), Positives = 70/118 (59%)
Frame = +3
Query: 6 KNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYL 185
KN+ RP SPH+ IY LPM S+ HRG+GIA++ G A G++ + +
Sbjct: 44 KNIGSNRPLSPHITIYSWSLPMAMSICHRGTGIALSAGVSLFGMSALLLPGNFESYLELV 103
Query: 186 SSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 359
SL LGPA+I AK + +PL++H NG+RHL +D KG IP ++G + L L+V+
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLKIPQLYQSGVVVLVLTVL 161
>sp|P70097|C560_CRIGR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1)
Length = 169
Score = 101 bits (252), Expect = 7e-22
Identities = 48/126 (38%), Positives = 74/126 (58%)
Frame = +3
Query: 6 KNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYL 185
KN RP SPHL IY+ LPM S+ HRG+G+A++ G A G++ + ++
Sbjct: 44 KNTSSKRPVSPHLTIYRWSLPMVMSICHRGTGVALSGGVSLFGLSALLLPGNFESYLMFI 103
Query: 186 SSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIA 365
SL LGPA+I AK ++ +PL++H NG+RHL +D KG I ++G L L+V+ +
Sbjct: 104 KSLCLGPALIHSAKFVLVFPLMYHSLNGIRHLIWDLGKGLSISQVYQSGVAVLMLAVLSS 163
Query: 366 TLFASI 383
A++
Sbjct: 164 VGLAAM 169
>sp|P35720|C560_BOVIN Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor (Integral membrane protein CII-3) (QPS1)
(QPs-1) (Succinate dehydrogenase complex subunit C)
Length = 169
Score = 93.6 bits (231), Expect = 2e-19
Identities = 48/126 (38%), Positives = 71/126 (56%)
Frame = +3
Query: 6 KNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFFYTGHYAEIIHYL 185
KN RP SPH+ IY LPM S+ HRG+GIA++ G A G + + ++
Sbjct: 44 KNTTLNRPLSPHISIYGWSLPMAMSICHRGTGIALSAGVSLFGLSALLVPGSFESHLEFV 103
Query: 186 SSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVVIA 365
SL LGPA+I AK + +PL++H NG+RHL +D KG I ++G L L+V+ +
Sbjct: 104 KSLCLGPALIHTAKFALVFPLMYHTWNGIRHLMWDLGKGLTISQLHQSGVAVLVLTVLSS 163
Query: 366 TLFASI 383
A++
Sbjct: 164 VGLAAM 169
>sp|P41955|C560_CAEBR Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 184
Score = 68.6 bits (166), Expect = 7e-12
Identities = 43/117 (36%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Frame = +3
Query: 24 RPYSPHLLIYKMELPMTTSLLHRGSGIAMA--IAWGGLGCGAFFYTGHYAEIIHYLSSLE 197
RP +PHL IY+ +L S HR SG MA + GGLG + + Y+
Sbjct: 52 RPIAPHLTIYQPQLTWMLSGFHRISGCVMAGTLLVGGLGFAVLPLD--FTTFVEYIRGWN 109
Query: 198 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFD-IPTTMRTGYIALALSVVIA 365
L A+ K I+ +P+IFH NG+R L +D AKG D I ++G++ +S VIA
Sbjct: 110 LPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVDNIGQVYKSGWLVFGVSAVIA 166
>sp|P41956|C560_CAEEL Succinate dehydrogenase cytochrome b560 subunit, mitochondrial
precursor
Length = 182
Score = 67.0 bits (162), Expect = 2e-11
Identities = 39/117 (33%), Positives = 63/117 (53%), Gaps = 3/117 (2%)
Frame = +3
Query: 24 RPYSPHLLIYKMELPMTTSLLHRGSGIAMA--IAWGGLGCGAFFYTGHYAEIIHYLSSLE 197
RP +PHL +Y+ +L S HR SG MA + GG+G + + + ++ S
Sbjct: 52 RPIAPHLTVYQPQLTWMLSGFHRISGCVMAGTLLVGGIGFAVLPFD--FTAFVDFIRSWN 109
Query: 198 LGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGF-DIPTTMRTGYIALALSVVIA 365
L A+ K I+ +P+IFH NG+R L +D AKG ++ ++GY+ LS ++A
Sbjct: 110 LPCAVTAVFKYIIAFPIIFHTLNGIRFLGFDLAKGVNNVGQIYKSGYLVSGLSAILA 166
>sp|P41085|DHSC_RICPR Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 55.8 bits (133), Expect = 4e-08
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 EKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFF--YTGHYAEII 176
++ + RP SPHL IYK ++ T S+LHR +G+A+ L Y +Y
Sbjct: 5 KQEIYNKRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYDNNY---- 60
Query: 177 HYLSSLELGPAIIFGAKLI-MCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALS 353
L+L I L+ + +H NG+RHL +D GF I TG+ + S
Sbjct: 61 -----LQLASCCIIKICLVAFSYSWCYHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCS 115
Query: 354 VVIATL 371
+++ L
Sbjct: 116 ILLTML 121
>sp|Q92J99|DHSC_RICCN Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 124
Score = 55.1 bits (131), Expect = 8e-08
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +3
Query: 3 EKNLKGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMAIAWGGLGCGAFF--YTGHYAEII 176
++ + RP SPHL IYK ++ T S+L+R +G+A+ A L Y +Y
Sbjct: 5 KQEIYNKRPTSPHLTIYKPQISSTLSILYRMTGVALFFAVSILVWWLILSKYDNNY---- 60
Query: 177 HYLSSLELGPAIIFGAKLI-MCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALS 353
L+L I L+ + + +H NG+RHL +D GF I TG+ + S
Sbjct: 61 -----LQLAECCIIKICLVAVSYAWFYHLCNGIRHLFWDIGYGFSIKLVNITGWCVVVGS 115
Query: 354 VVIATL 371
V++ L
Sbjct: 116 VLLTVL 121
>sp|Q59659|DHSC_PARDE Succinate dehydrogenase cytochrome b556 subunit (Cytochrome b-556)
Length = 130
Score = 53.1 bits (126), Expect = 3e-07
Identities = 40/124 (32%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Frame = +3
Query: 15 KGPRPYSPHLLIYKMELPMTTSLLHRGSGIAMA-----IAWGGLGCGAFFYTGHYAEIIH 179
+G RP SPHL +Y++ L TS++ R +G A+ I W + A G +A
Sbjct: 6 RGNRPLSPHLQVYRLPLAAITSIMTRITGHALVAGIVLITWWLVA--AVTSPGAFA-CAD 62
Query: 180 YLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 359
++ LG I+ G+ W L +H G+RHL YD G +I ++ +A SVV
Sbjct: 63 WVVRSWLGFIILTGSM----WALWYHLLAGLRHLFYDAGYGLEIEQAHKSSQALIAGSVV 118
Query: 360 IATL 371
+A L
Sbjct: 119 LAVL 122
>sp|P80481|C560_RECAM Succinate dehydrogenase cytochrome b560 subunit (Succinate
dehydrogenase, subunit III)
Length = 144
Score = 50.8 bits (120), Expect = 1e-06
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 3/128 (2%)
Frame = +3
Query: 9 NLKGPRPYSPHLLIYKMELPMTTSLLHR--GSGIAMAIAWGGLGCGAF-FYTGHYAEIIH 179
N+ RP SPHL IYK+++ T S+ HR G +A+ + + L F+ YA
Sbjct: 16 NMNINRPISPHLTIYKLQITNTLSIFHRITGGVLALTLCFFILILKMLNFHLSSYAFYSI 75
Query: 180 YLSSLELGPAIIFGAKLIMCWPLIFHYTNGMRHLAYDFAKGFDIPTTMRTGYIALALSVV 359
+ + + + + +H G+RHL +D +I TGYI L L+ +
Sbjct: 76 AYTLNQYSGFLFIAISFFLLLFIFYHLFAGLRHLVWDAGYALEIENVYLTGYIMLGLAFL 135
Query: 360 IATLFASI 383
TL A I
Sbjct: 136 F-TLIAWI 142
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,579,703
Number of Sequences: 369166
Number of extensions: 1073478
Number of successful extensions: 2500
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2486
length of database: 68,354,980
effective HSP length: 101
effective length of database: 49,696,745
effective search space used: 2584230740
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)