Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_B01
(911 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ... 357 3e-98
sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (He... 356 6e-98
sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4 356 6e-98
sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (Mm... 352 8e-97
sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HI... 318 1e-86
sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3) 318 2e-86
sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2) 316 7e-86
sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2 284 2e-76
sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1) 279 7e-75
sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1) 274 3e-73
>sp|P63036|DNJA1_RAT DnaJ homolog subfamily A member 1 (DnaJ-like protein 1)
sp|P63037|DNJA1_MOUSE DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2)
Length = 397
Score = 357 bits (916), Expect = 3e-98
Identities = 168/298 (56%), Positives = 218/298 (73%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
VKET YYD+LGV PN +++E HPDKNP+ G+KFK+ISQA+EVLAD KKR
Sbjct: 2 VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLADSKKR 61
Query: 183 QIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELY 362
++YD GGEQA+KEGG GF + V+HQL+VTL++LY
Sbjct: 62 ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDLY 119
Query: 363 KGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRT 542
G TRKLA+QKNVICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C
Sbjct: 120 NGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCME 179
Query: 543 CKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDI 722
C+G E I+ +DRCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI
Sbjct: 180 CQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDI 239
Query: 723 CIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKN 896
IVL++K H VFTR+ DL M + LV++LCGF++ I+TLDNR +V+ + PG+++K+
Sbjct: 240 IIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKH 297
>sp|P31689|DNJA1_HUMAN DnaJ homolog subfamily A member 1 (Heat shock 40 kDa protein 4)
(DnaJ protein homolog 2) (HSJ-2) (HSDJ)
Length = 397
Score = 356 bits (913), Expect = 6e-98
Identities = 167/298 (56%), Positives = 218/298 (73%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
VKET YYD+LGV PN +++E HPDKNP+ G+KFK+ISQA+EVL+D KKR
Sbjct: 2 VKETTYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKR 61
Query: 183 QIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELY 362
++YD GGEQA+KEGG GF + V+HQL+VTL++LY
Sbjct: 62 ELYDKGGEQAIKEGGAGGGFGSPMDIFDMFFGGGGRMQRERRGKN--VVHQLSVTLEDLY 119
Query: 363 KGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRT 542
G TRKLA+QKNVICDKC GRGGK+GAV+ C +CRG G+++ I Q+GPGMVQQ+Q+ C
Sbjct: 120 NGATRKLALQKNVICDKCEGRGGKKGAVECCPNCRGTGMQIRIHQIGPGMVQQIQSVCME 179
Query: 543 CKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDI 722
C+G E I+ +DRCK C G+K+VREKK+LEVHIDKGM DGQ+I F+GEGDQEPGLEPGDI
Sbjct: 180 CQGHGERISPKDRCKSCNGRKIVREKKILEVHIDKGMKDGQKITFHGEGDQEPGLEPGDI 239
Query: 723 CIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKN 896
IVL++K H VFTR+ DL M + LV++LCGF++ I+TLDNR +V+ + PG+++K+
Sbjct: 240 IIVLDQKDHAVFTRRGEDLFMCMDIQLVEALCGFQKPISTLDNRTIVITSHPGQIVKH 297
>sp|Q8WW22|DNJA4_HUMAN DnaJ homolog subfamily A member 4
Length = 397
Score = 356 bits (913), Expect = 6e-98
Identities = 171/302 (56%), Positives = 220/302 (72%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
VKET+YYDILGV P+ S +E HPDKNPD G+KFK ISQA+EVL+DPKKR
Sbjct: 2 VKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKR 61
Query: 183 QIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELY 362
+YD GGEQA+KEGG S + V+HQL+VTL++LY
Sbjct: 62 DVYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMARERRGKN-VVHQLSVTLEDLY 120
Query: 363 KGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRT 542
G T+KLA+QKNVIC+KC G GGK+G+V+KC C+G G+++HI+Q+GPGMVQQ+QT C
Sbjct: 121 NGVTKKLALQKNVICEKCEGVGGKKGSVEKCPLCKGRGMQIHIQQIGPGMVQQIQTVCIE 180
Query: 543 CKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDI 722
CKG+ E IN +DRC+ C G KV+REKK++EVH++KGM DGQ+I F+GEGDQEP LEPGD+
Sbjct: 181 CKGQGERINPKDRCESCSGAKVIREKKIIEVHVEKGMKDGQKILFHGEGDQEPELEPGDV 240
Query: 723 CIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKNLE 902
IVL++K H+VF R+ DLI MK+ L ++LCGFK+TI TLDNRILV+ +K GEVIK+ +
Sbjct: 241 IIVLDQKDHSVFQRRGHDLIMKMKIQLSEALCGFKKTIKTLDNRILVITSKAGEVIKHGD 300
Query: 903 YR 908
R
Sbjct: 301 LR 302
>sp|Q9JMC3|DNJA4_MOUSE DnaJ homolog subfamily A member 4 (MmDjA4)
Length = 397
Score = 352 bits (903), Expect = 8e-97
Identities = 169/298 (56%), Positives = 217/298 (72%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
VKET+YYDILGV P+ S +E HPDKNPD G+KFK ISQA+EVL+DPKKR
Sbjct: 2 VKETQYYDILGVKPSASPEEIKKAYRKLALKYHPDKNPDEGEKFKLISQAYEVLSDPKKR 61
Query: 183 QIYDDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVTLDELY 362
IYD GGEQA+KEGG S + V+HQL+VTL++LY
Sbjct: 62 DIYDQGGEQAIKEGGSGSPSFSSPMDIFDMFFGGGGRMTRERRGKN-VVHQLSVTLEDLY 120
Query: 363 KGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRT 542
G T+KLA+QKNVIC+KC G GGK+G+V+KC C+G G++VHI+Q+GPGMVQQ+QT C
Sbjct: 121 NGITKKLALQKNVICEKCEGIGGKKGSVEKCPLCKGRGMQVHIQQIGPGMVQQIQTVCIE 180
Query: 543 CKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDI 722
CKG+ E IN +DRC+ C G KV REKK++EVH++KGM DGQ+I F+GEGDQEP L+PGD+
Sbjct: 181 CKGQGERINPKDRCENCSGAKVTREKKIIEVHVEKGMKDGQKILFHGEGDQEPELDPGDV 240
Query: 723 CIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKN 896
IVL++K H+VF R+ DLI MK+ L ++LCGFK+TI TLD+R+LV+ +K GEVIK+
Sbjct: 241 IIVLDQKDHSVFQRRGQDLIMKMKIQLSEALCGFKKTIKTLDDRVLVISSKSGEVIKH 298
>sp|O60884|DNJA2_HUMAN DnaJ homolog subfamily A member 2 (HIRA interacting protein 4)
(Cell cycle progression restoration gene 3 protein)
(Dnj3)
Length = 412
Score = 318 bits (816), Expect = 1e-86
Identities = 158/302 (52%), Positives = 200/302 (66%), Gaps = 5/302 (1%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
V +TK YDILGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 183 QIYDDGGEQALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVT 347
++YD GEQ L+EG G G F + ++H L V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 348 LDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQ 527
L++LY G T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQ 183
Query: 528 TTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGL 707
+ C C GE EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+
Sbjct: 184 SVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGV 243
Query: 708 EPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEV 887
EPGDI ++L+EK H VF R DL K+ LV++LCGF+ T LD R +VV+ PG+V
Sbjct: 244 EPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDGRQIVVKYPPGKV 303
Query: 888 IK 893
I+
Sbjct: 304 IE 305
>sp|Q9QYJ0|DNJA2_MOUSE DnaJ homolog subfamily A member 2 (mDj3)
Length = 412
Score = 318 bits (814), Expect = 2e-86
Identities = 158/302 (52%), Positives = 200/302 (66%), Gaps = 5/302 (1%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
V +TK YDILGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 183 QIYDDGGEQALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVT 347
++YD GEQ L+EG G G F + ++H L V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 348 LDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQ 527
L++LY G T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQ 183
Query: 528 TTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGL 707
+ C C GE EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+
Sbjct: 184 SVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGV 243
Query: 708 EPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEV 887
EPGDI ++L+EK H VF R DL K+ LV++LCGF+ T LD R +VV+ PG+V
Sbjct: 244 EPGDIVLLLQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKV 303
Query: 888 IK 893
I+
Sbjct: 304 IE 305
>sp|O35824|DNJA2_RAT DnaJ homolog subfamily A member 2 (RDJ2)
Length = 412
Score = 316 bits (809), Expect = 7e-86
Identities = 157/302 (51%), Positives = 199/302 (65%), Gaps = 5/302 (1%)
Frame = +3
Query: 3 VKETKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKR 182
V +TK YDILGV P SE E HPDKNP+AGDKFKEIS A+EVL++P+KR
Sbjct: 4 VADTKLYDILGVPPGASENELKKAYRKLAKEYHPDKNPNAGDKFKEISFAYEVLSNPEKR 63
Query: 183 QIYDDGGEQALKEGGGDSG-----FHNXXXXXXXXXXXXXXXXXXXXXXXXXVIHQLNVT 347
++YD GEQ L+EG G G F + ++H L V+
Sbjct: 64 ELYDRYGEQGLREGSGGGGGMDDIFSHIFGGGLFGFMGNQSRSRNGRRRGEDMMHPLKVS 123
Query: 348 LDELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQ 527
L++LY G T KL + KNV+C C+G+GGK GAVQKC++CRG GV + IRQL PGMVQQMQ
Sbjct: 124 LEDLYNGKTTKLQLSKNVLCSACSGQGGKSGAVQKCSACRGRGVRIMIRQLAPGMVQQMQ 183
Query: 528 TTCRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGL 707
+ C C GE EVINE+DRCKKCEG+KV++E K+LEVH+DKGM GQ+I F GE DQ PG+
Sbjct: 184 SVCSDCNGEGEVINEKDRCKKCEGKKVIKEVKILEVHVDKGMKHGQRITFTGEADQAPGV 243
Query: 708 EPGDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEV 887
EPGDI + ++EK H VF R DL K+ LV++LCGF+ T LD R +VV+ PG+V
Sbjct: 244 EPGDIVLFVQEKEHEVFQRDGNDLHMTYKIGLVEALCGFQFTFKHLDARQIVVKYPPGKV 303
Query: 888 IK 893
I+
Sbjct: 304 IE 305
>sp|P42824|DNJH2_ALLPO DnaJ protein homolog 2
Length = 418
Score = 284 bits (727), Expect = 2e-76
Identities = 141/305 (46%), Positives = 195/305 (63%), Gaps = 6/305 (1%)
Frame = +3
Query: 12 TKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIY 191
TKYY++LGV+ N + ++ HPDK D +KFKEI QA+EVL DP+KR+IY
Sbjct: 12 TKYYEVLGVSKNATPEDLKKAYRKAAIKNHPDKGGDP-EKFKEIGQAYEVLNDPEKREIY 70
Query: 192 DDGGEQALKEG-GGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLD 353
D GE+ LKEG GG G H+ V+H L V+L+
Sbjct: 71 DQYGEEGLKEGMGGGGGVHDPFDIFQSFFGGGGFGGGGSSRGRRQRRGEDVVHPLKVSLE 130
Query: 354 ELYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTT 533
+LY G ++KL++ +NV+C KC G+G K GA C SC+G G++V IRQLGPGM+QQMQ
Sbjct: 131 DLYNGTSKKLSLSRNVLCTKCKGKGSKSGASMNCASCQGSGMKVSIRQLGPGMIQQMQHP 190
Query: 534 CRTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEP 713
C CKG E+I+++DRC +C+G+KVV++KKVLEVH++KGM +GQ+I F GE D+ P
Sbjct: 191 CNECKGTGEMISDKDRCPQCKGEKVVQQKKVLEVHVEKGMQNGQKITFPGEADEAPDTVT 250
Query: 714 GDICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIK 893
GDI VL++K H F RK DL Y L L ++LCGF+ +T LDNR L++++ PGEVIK
Sbjct: 251 GDIVFVLQQKEHPKFKRKGDDLFYEHSLSLTEALCGFQFVLTHLDNRQLLIKSNPGEVIK 310
Query: 894 NLEYR 908
+++
Sbjct: 311 PDQFK 315
>sp|Q04960|DNJH_CUCSA DnaJ protein homolog (DNAJ-1)
Length = 413
Score = 279 bits (714), Expect = 7e-75
Identities = 142/305 (46%), Positives = 191/305 (62%), Gaps = 5/305 (1%)
Frame = +3
Query: 12 TKYYDILGVNPNVSEQEXXXXXXXXXXXXHPDKNPDAGDKFKEISQAFEVLADPKKRQIY 191
TKYY+ILGV+ N S+ + HPDK D +KFKE++QA+EVL+DP+KR+IY
Sbjct: 11 TKYYEILGVSKNASQDDLKKAYRKAAIKNHPDKGGDP-EKFKELAQAYEVLSDPEKREIY 69
Query: 192 DDGGEQALKEGGGDSGFHNXXXXXXXXXXXXXXXXXXXXXXXXX-----VIHQLNVTLDE 356
D GE ALKEG G G H+ VIH L V+L++
Sbjct: 70 DQYGEDALKEGMGGGGGHDPFDIFQSFFGGSPFGGGGSSRGRRQRRGEDVIHPLKVSLED 129
Query: 357 LYKGNTRKLAIQKNVICDKCNGRGGKEGAVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTC 536
LY G ++KL++ +NVIC KC G+G K GA KC C+G G++V IR LGP M+QQMQ C
Sbjct: 130 LYNGTSKKLSLSRNVICSKCKGKGSKSGASMKCPGCQGSGMKVSIRHLGPSMIQQMQHPC 189
Query: 537 RTCKGEREVINERDRCKKCEGQKVVREKKVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPG 716
CKG E IN++DRC +C+G+KVV+EKKVLEV ++KGM + Q+I F GE D+ P G
Sbjct: 190 NECKGTGETINDKDRCSQCKGEKVVQEKKVLEVIVEKGMQNAQKITFPGEADEAPDTVTG 249
Query: 717 DICIVLEEKPHNVFTRKKADLIYNMKLDLVDSLCGFKRTITTLDNRILVVETKPGEVIKN 896
DI VL++K H F RK DL L LV+SLCGF+ +T LD R L++++ PGEV+K
Sbjct: 250 DIVFVLQQKEHPKFKRKGDDLFVEHTLSLVESLCGFQFILTHLDGRQLLIKSLPGEVVKP 309
Query: 897 LEYRA 911
+++A
Sbjct: 310 DQFKA 314
>sp|Q03363|DNJH1_ALLPO DnaJ protein homolog 1 (DNAJ-1)
Length = 397
Score = 274 bits (700), Expect = 3e-73
Identities = 136/277 (49%), Positives = 184/277 (66%), Gaps = 6/277 (2%)
Frame = +3
Query: 99 HPDKNPDAGDKFKEISQAFEVLADPKKRQIYDDGGEQALKEG-GGDSGFHNXXXXXXXXX 275
HPDK D +KFKE++QA++VL+DP+KR+IYD GE ALKEG GG G H+
Sbjct: 20 HPDKGGDP-EKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDHDPFDIFQSFF 78
Query: 276 XXXXXXXXXXXXXXXX-----VIHQLNVTLDELYKGNTRKLAIQKNVICDKCNGRGGKEG 440
V+H L V+L+ELY G ++KL++ +NVIC KCNG+G K G
Sbjct: 79 GGGGFGGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSG 138
Query: 441 AVQKCNSCRGMGVEVHIRQLGPGMVQQMQTTCRTCKGEREVINERDRCKKCEGQKVVREK 620
A +C SC+G G++V IRQLGPGM+QQMQ C CKG E+IN++DRC C+G+KVV+EK
Sbjct: 139 ASMRCASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCPLCKGEKVVQEK 198
Query: 621 KVLEVHIDKGMTDGQQIKFNGEGDQEPGLEPGDICIVLEEKPHNVFTRKKADLIYNMKLD 800
KVLEVH++KGM +GQ+I F GE D+ P GDI VL++K H F RK DL Y L
Sbjct: 199 KVLEVHVEKGMQNGQRITFPGEADEAPDTVTGDIVFVLQQKEHPKFQRKGDDLFYKHTLS 258
Query: 801 LVDSLCGFKRTITTLDNRILVVETKPGEVIKNLEYRA 911
L ++LCGF+ +T LD R L++++ PGEV+K +++A
Sbjct: 259 LTEALCGFQFVLTHLDGRQLLIKSNPGEVVKPDQFKA 295
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,872,258
Number of Sequences: 369166
Number of extensions: 1772787
Number of successful extensions: 6119
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5238
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9270587090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)