Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A21
(855 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid... 190 4e-48
sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolip... 188 2e-47
sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolip... 186 5e-47
sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolip... 186 7e-47
sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolip... 186 7e-47
sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolip... 186 7e-47
sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolip... 185 1e-46
sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolip... 183 5e-46
sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolip... 181 2e-45
sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolip... 179 9e-45
>sp|P63081|VATL_RAT Vacuolar ATP synthase 16 kDa proteolipid subunit
sp|P63082|VATL_MOUSE Vacuolar ATP synthase 16 kDa proteolipid subunit (PL16)
Length = 155
Score = 190 bits (483), Expect = 4e-48
Identities = 105/141 (74%), Positives = 112/141 (79%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GVMG +SAMVF A+GAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAV
Sbjct: 15 GVMGASSAMVFSAMGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 74
Query: 183 LIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILI 362
LIA + T+ +S IGIVGDAGVRGTAQQPRLFVGMILI
Sbjct: 75 LIANSLTDGITLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILI 134
Query: 363 LIFAEVLGLYGLIVALILSTK 425
LIFAEVLGLYGLIVALILSTK
Sbjct: 135 LIFAEVLGLYGLIVALILSTK 155
>sp|Q03105|VATL_TORMA Vacuolar ATP synthase 16 kDa proteolipid subunit (15 kDa
mediatophore protein)
Length = 154
Score = 188 bits (477), Expect = 2e-47
Identities = 104/141 (73%), Positives = 113/141 (80%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GV+G ++AMVF ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAV
Sbjct: 14 GVIGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 73
Query: 183 LIAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILI 362
LIA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMILI
Sbjct: 74 LIANSLTEDISLFKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILI 133
Query: 363 LIFAEVLGLYGLIVALILSTK 425
LIFAEVLGLYGLIVALILSTK
Sbjct: 134 LIFAEVLGLYGLIVALILSTK 154
>sp|P55277|VATL_HELVI Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 186 bits (473), Expect = 5e-47
Identities = 104/144 (72%), Positives = 111/144 (77%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAV
Sbjct: 12 GVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 71
Query: 183 LIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGM 353
LIA + NYT+ K H IGIVGDAGVRGTAQQPRLFVGM
Sbjct: 72 LIAGSLDAPSNNYTLYKGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131
Query: 354 ILILIFAEVLGLYGLIVALILSTK 425
ILILIFAEVLGLYGLIVA+ L TK
Sbjct: 132 ILILIFAEVLGLYGLIVAIYLYTK 155
>sp|P27449|VATL_HUMAN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 186 bits (472), Expect = 7e-47
Identities = 103/140 (73%), Positives = 111/140 (79%)
Frame = +3
Query: 6 VMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 185
VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE IMKSIIPVVMAGIIAIYGLVVAVL
Sbjct: 16 VMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEQIMKSIIPVVMAGIIAIYGLVVAVL 75
Query: 186 IAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILIL 365
IA + + ++ KS IGIVGDAGVRGTAQQPRLFVGMILIL
Sbjct: 76 IANSLNDDISLYKSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILIL 135
Query: 366 IFAEVLGLYGLIVALILSTK 425
IFAEVLGLYGLIVALILSTK
Sbjct: 136 IFAEVLGLYGLIVALILSTK 155
>sp|P23956|VATL_BOVIN Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 186 bits (472), Expect = 7e-47
Identities = 102/140 (72%), Positives = 111/140 (79%)
Frame = +3
Query: 6 VMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 185
VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVL
Sbjct: 16 VMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVL 75
Query: 186 IAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILIL 365
IA + ++ +S IGIVGDAGVRGTAQQPRLFVGMILIL
Sbjct: 76 IANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILIL 135
Query: 366 IFAEVLGLYGLIVALILSTK 425
IFAEVLGLYGLIVALILSTK
Sbjct: 136 IFAEVLGLYGLIVALILSTK 155
>sp|O18882|VATL_SHEEP Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 155
Score = 186 bits (472), Expect = 7e-47
Identities = 102/140 (72%), Positives = 111/140 (79%)
Frame = +3
Query: 6 VMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAVL 185
VMG ++AMVF ALGAAYGTAKSGTGIA+M+VMRPE+IMKSIIPVVMAGIIAIYGLVVAVL
Sbjct: 16 VMGASAAMVFSALGAAYGTAKSGTGIAAMSVMRPEMIMKSIIPVVMAGIIAIYGLVVAVL 75
Query: 186 IAQQIGTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMILIL 365
IA + ++ +S IGIVGDAGVRGTAQQPRLFVGMILIL
Sbjct: 76 IANSLNDGISLYRSFLQLGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMILIL 135
Query: 366 IFAEVLGLYGLIVALILSTK 425
IFAEVLGLYGLIVALILSTK
Sbjct: 136 IFAEVLGLYGLIVALILSTK 155
>sp|P31403|VATL_MANSE Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 156
Score = 185 bits (470), Expect = 1e-46
Identities = 103/144 (71%), Positives = 111/144 (77%), Gaps = 3/144 (2%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAV
Sbjct: 12 GVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 71
Query: 183 LIAQQI---GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGM 353
LIA + NYT+ + H IGIVGDAGVRGTAQQPRLFVGM
Sbjct: 72 LIAGSLDSPSNNYTLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGM 131
Query: 354 ILILIFAEVLGLYGLIVALILSTK 425
ILILIFAEVLGLYGLIVA+ L TK
Sbjct: 132 ILILIFAEVLGLYGLIVAIYLYTK 155
>sp|O16110|VATL_AEDAE Vacuolar ATP synthase 16 kDa proteolipid subunit (V-ATPase
C-subunit)
Length = 157
Score = 183 bits (465), Expect = 5e-46
Identities = 102/143 (71%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GVMG +A++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAV
Sbjct: 15 GVMGAAAAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 74
Query: 183 LIAQQIG--TNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 356
LIA + T Y++ K H IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 75 LIAGSLDTPTKYSLYKGFIHLGAGLAVGISGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 134
Query: 357 LILIFAEVLGLYGLIVALILSTK 425
LILIFAEVLGLYGLIVA+ L TK
Sbjct: 135 LILIFAEVLGLYGLIVAIYLYTK 157
>sp|P23380|VATL_DROME Vacuolar ATP synthase 16 kDa proteolipid subunit (Ductin) (VHA16K)
Length = 159
Score = 181 bits (459), Expect = 2e-45
Identities = 101/143 (70%), Positives = 111/143 (77%), Gaps = 2/143 (1%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GVMG SA++F ALGAAYGTAKSGTGIA+M+VMRPELIMKSIIPVVMAGIIAIYGLVVAV
Sbjct: 17 GVMGAASAIIFSALGAAYGTAKSGTGIAAMSVMRPELIMKSIIPVVMAGIIAIYGLVVAV 76
Query: 183 LIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 356
LIA + + Y++ + H IGIVGDAGVRGTAQQPRLFVGMI
Sbjct: 77 LIAGALEEPSKYSLYRGFIHLGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQPRLFVGMI 136
Query: 357 LILIFAEVLGLYGLIVALILSTK 425
LILIFAEVLGLYGLIVA+ L TK
Sbjct: 137 LILIFAEVLGLYGLIVAIYLYTK 159
>sp|Q26250|VATL_NEPNO Vacuolar ATP synthase 16 kDa proteolipid subunit
Length = 159
Score = 179 bits (454), Expect = 9e-45
Identities = 100/143 (69%), Positives = 109/143 (76%), Gaps = 2/143 (1%)
Frame = +3
Query: 3 GVMGVTSAMVFCALGAAYGTAKSGTGIASMAVMRPELIMKSIIPVVMAGIIAIYGLVVAV 182
GVMG SAMVF ALGAAYGTAKSG GI++M+VMRPELIMK IIPVVMAGIIAIYGLVVAV
Sbjct: 14 GVMGAASAMVFSALGAAYGTAKSGVGISAMSVMRPELIMKCIIPVVMAGIIAIYGLVVAV 73
Query: 183 LIAQQI--GTNYTMEKSLRHXXXXXXXXXXXXXXXXXIGIVGDAGVRGTAQQPRLFVGMI 356
LIA ++ YT+ + H IGIVGDAGVRGTAQQPRL+VGMI
Sbjct: 74 LIAGKLDEAPTYTLYQGFVHMGAGLSVGLSGLAAGFAIGIVGDAGVRGTAQQPRLYVGMI 133
Query: 357 LILIFAEVLGLYGLIVALILSTK 425
LILIFAEVLGLYGLIVA+ L TK
Sbjct: 134 LILIFAEVLGLYGLIVAIFLYTK 156
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,155,747
Number of Sequences: 369166
Number of extensions: 1242251
Number of successful extensions: 3911
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3831
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8438301375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)