Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A17-2
(353 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q00215|ACTC_STYPL Actin, cytoplasmic 175 3e-44
sp|P53470|ACT1_SCHMA Actin-1 175 3e-44
sp|P53458|ACT5_DIPDE Actin-5 175 3e-44
sp|P17126|ACT_HYDAT Actin, non-muscle 6.2 174 7e-44
sp|P92179|ACTC_BIOGL Actin, cytoplasmic 174 7e-44
sp|P69005|ACTD_STRPU Actin, cytoskeletal IIB >gi|67462096|s... 174 7e-44
sp|P10990|ACT1_STRFN Actin-15A 174 7e-44
sp|P53457|ACT3_DIPDE Actin-3 174 7e-44
sp|Q964D9|ACTC_HELTI Actin, cytoplasmic 174 7e-44
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 174 7e-44
>sp|Q00215|ACTC_STYPL Actin, cytoplasmic
Length = 375
Score = 175 bits (444), Expect = 3e-44
Identities = 84/88 (95%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGG+TMYPGIADRMQKEISALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 347
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 348 SLSTFQQMWISKQEYDESGPSIVHRKCF 375
>sp|P53470|ACT1_SCHMA Actin-1
Length = 376
Score = 175 bits (443), Expect = 3e-44
Identities = 85/88 (96%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLY+N VLSGGSTMYPGIADRMQKEISALAP TMKIKIVAPPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYSNTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPGIVHRKCF 376
>sp|P53458|ACT5_DIPDE Actin-5
Length = 371
Score = 175 bits (443), Expect = 3e-44
Identities = 85/88 (96%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTMYPGI+DRMQKEISALAP TMKIKIVAPPERKYSVWIGGSILA
Sbjct: 284 DIRKDLYANTVLSGGSTMYPGISDRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILA 343
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGPGIVHRKCF
Sbjct: 344 SLSTFQQMWISKQEYDESGPGIVHRKCF 371
>sp|P17126|ACT_HYDAT Actin, non-muscle 6.2
Length = 376
Score = 174 bits (440), Expect = 7e-44
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGG+TM+PGIADRMQKEISALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGTTMFPGIADRMQKEISALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P92179|ACTC_BIOGL Actin, cytoplasmic
Length = 376
Score = 174 bits (440), Expect = 7e-44
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P69005|ACTD_STRPU Actin, cytoskeletal IIB
sp|P69004|ACT2_STRFN Actin-15B
Length = 376
Score = 174 bits (440), Expect = 7e-44
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P10990|ACT1_STRFN Actin-15A
Length = 376
Score = 174 bits (440), Expect = 7e-44
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANCVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|P53457|ACT3_DIPDE Actin-3
Length = 377
Score = 174 bits (440), Expect = 7e-44
Identities = 85/88 (96%), Positives = 85/88 (96%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTMYPGIADRMQKEISALAP TMKIKIVAPPERKYSVWIGGSILA
Sbjct: 290 DIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPSTMKIKIVAPPERKYSVWIGGSILA 349
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 350 SLSTFQQMWISKQEYDESGPAIVHRKCF 377
>sp|Q964D9|ACTC_HELTI Actin, cytoplasmic
Length = 376
Score = 174 bits (440), Expect = 7e-44
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 174 bits (440), Expect = 7e-44
Identities = 83/88 (94%), Positives = 86/88 (97%)
Frame = -3
Query: 351 DIRKDLYANIVLSGGSTMYPGIADRMQKEISALAPPTMKIKIVAPPERKYSVWIGGSILA 172
DIRKDLYAN VLSGGSTM+PGIADRMQKEI+ALAPPTMKIKI+APPERKYSVWIGGSILA
Sbjct: 289 DIRKDLYANTVLSGGSTMFPGIADRMQKEITALAPPTMKIKIIAPPERKYSVWIGGSILA 348
Query: 171 SLSTFQQMWISKQEYDESGPGIVHRKCF 88
SLSTFQQMWISKQEYDESGP IVHRKCF
Sbjct: 349 SLSTFQQMWISKQEYDESGPSIVHRKCF 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,225,575
Number of Sequences: 369166
Number of extensions: 847929
Number of successful extensions: 2743
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2402
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2688
length of database: 68,354,980
effective HSP length: 85
effective length of database: 52,652,505
effective search space used: 1684880160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)