Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_018_A13
(941 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATP... 474 e-133
sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-... 470 e-132
sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATP... 452 e-127
sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATP... 451 e-126
sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATP... 346 6e-95
sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subuni... 317 4e-86
sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subuni... 315 1e-85
sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATP... 306 4e-83
sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATP... 292 8e-79
sp|P32366|VA0D_YEAST Vacuolar ATP synthase subunit d (V-ATP... 259 8e-69
>sp|Q25531|VA0D_MANSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 40 kDa subunit) (M40)
Length = 348
Score = 474 bits (1221), Expect = e-133
Identities = 226/286 (79%), Positives = 258/286 (90%), Gaps = 1/286 (0%)
Frame = +2
Query: 41 FNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLSVS 220
FNID GYLEGL RGFKCGI+KQ+DY NLVQCETLEDLKLHLQ TDYG FLANE PLSVS
Sbjct: 6 FNIDAGYLEGLCRGFKCGILKQSDYLNLVQCETLEDLKLHLQGTDYGTFLANEPSPLSVS 65
Query: 221 IIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELIAK 400
I++K+REKLV+EFQHLRN SVEPL+TFLD+ITYSYMIDNI LLITGTLH RPI+ELI K
Sbjct: 66 TIDDKLREKLVIEFQHLRNHSVEPLSTFLDFITYSYMIDNIILLITGTLHQRPISELIPK 125
Query: 401 CHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYRA 580
CHPLGSFEQMEA+H+++TPAELYNAVLVDTPLAP+F+DCISEQDL E +IEIIRNTLY+A
Sbjct: 126 CHPLGSFEQMEAIHVAATPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLYKA 185
Query: 581 YIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRLY 760
Y+E FY+FCK +GG TA++MCEILAFEADRR+ IITINSF TELSK+DRA LYP+CG+L
Sbjct: 186 YLEAFYDFCKQIGGTTADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPRCGKLN 245
Query: 761 PEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKF 895
P+GL+ LARADDYEQVKAVA+YY+EY A+FEG G DK+LEDKF
Sbjct: 246 PDGLAALARADDYEQVKAVAEYYAEYSALFEGAGNNVGDKTLEDKF 291
>sp|Q9W4P5|VA0D1_DROME Vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1) (Vacuolar
proton pump d subunit 1) (V-ATPase 39 kDa subunit 1)
Length = 350
Score = 470 bits (1210), Expect = e-132
Identities = 222/294 (75%), Positives = 260/294 (88%), Gaps = 1/294 (0%)
Frame = +2
Query: 35 YYFNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLS 214
+ FNID GYLEGL RGFKCGI+KQ DY NLVQCETLEDLKLHLQ TDYG+FLANE PLS
Sbjct: 6 FMFNIDNGYLEGLCRGFKCGILKQADYLNLVQCETLEDLKLHLQGTDYGSFLANEPSPLS 65
Query: 215 VSIIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELI 394
VS+I++K+REKLV+EFQH+RN +VEPL+ FLD+ITY YMIDNI LLITGTLH RPI+ELI
Sbjct: 66 VSVIDDKLREKLVIEFQHMRNHAVEPLSNFLDFITYGYMIDNIILLITGTLHQRPISELI 125
Query: 395 AKCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLY 574
KCHPLGSFEQMEA+H++STPAELYNAVLVDTPLAP+F+DCISEQDL E +IEIIRNTLY
Sbjct: 126 PKCHPLGSFEQMEAIHVASTPAELYNAVLVDTPLAPFFVDCISEQDLDEMNIEIIRNTLY 185
Query: 575 RAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGR 754
+AY+E FY FCK++GG TA++MCEILAFEADRR+ IITINSF TELSK+DRA LYP CG+
Sbjct: 186 KAYLEAFYNFCKNMGGATADVMCEILAFEADRRAIIITINSFGTELSKDDRAKLYPNCGK 245
Query: 755 LYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFLNTKLK 913
+YP+GL+ LARADDYEQVK VA+YY+EY A+F+G G DK+LEDKF ++K
Sbjct: 246 MYPDGLAALARADDYEQVKTVAEYYAEYAALFDGSGNNPGDKTLEDKFFEHEVK 299
>sp|P51863|VA0D_MOUSE Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (Physophilin)
Length = 351
Score = 452 bits (1164), Expect = e-127
Identities = 216/295 (73%), Positives = 254/295 (86%), Gaps = 1/295 (0%)
Frame = +2
Query: 32 DYYFNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPL 211
+ YFN+D GYLEGLVRG K G++ Q DY NLVQCETLEDLKLHLQSTDYGNFLANEA PL
Sbjct: 6 ELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPL 65
Query: 212 SVSIIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITEL 391
+VS+I++K++EK+V+EF+H+RN + EPLA+FLD+ITYSYMIDN+ LLITGTLH R I EL
Sbjct: 66 TVSVIDDKLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAEL 125
Query: 392 IAKCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTL 571
+ KCHPLGSFEQMEA++I+ TPAELYNA+LVDTPLA +F DCISEQDL E +IEIIRNTL
Sbjct: 126 VPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTL 185
Query: 572 YRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCG 751
Y+AY+E FY+FC LGG TA+ MC IL FEADRR+FIITINSF TELSKEDRA L+P CG
Sbjct: 186 YKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCG 245
Query: 752 RLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFLNTKLK 913
RLYPEGL+ LARADDYEQVK VADYY EYK +FEG G+ DK+LED+F ++K
Sbjct: 246 RLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK 300
>sp|P61420|VA0D_BOVIN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
sp|P61421|VA0D_HUMAN Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase AC39 subunit) (V-ATPase
40 kDa accessory protein) (P39) (32 kDa accessory
protein)
Length = 351
Score = 451 bits (1161), Expect = e-126
Identities = 215/295 (72%), Positives = 254/295 (86%), Gaps = 1/295 (0%)
Frame = +2
Query: 32 DYYFNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPL 211
+ YFN+D GYLEGLVRG K G++ Q DY NLVQCETLEDLKLHLQSTDYGNFLANEA PL
Sbjct: 6 ELYFNVDNGYLEGLVRGLKAGVLSQADYLNLVQCETLEDLKLHLQSTDYGNFLANEASPL 65
Query: 212 SVSIIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITEL 391
+VS+I+++++EK+V+EF+H+RN + EPLA+FLD+ITYSYMIDN+ LLITGTLH R I EL
Sbjct: 66 TVSVIDDRLKEKMVVEFRHMRNHAYEPLASFLDFITYSYMIDNVILLITGTLHQRSIAEL 125
Query: 392 IAKCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTL 571
+ KCHPLGSFEQMEA++I+ TPAELYNA+LVDTPLA +F DCISEQDL E +IEIIRNTL
Sbjct: 126 VPKCHPLGSFEQMEAVNIAQTPAELYNAILVDTPLAAFFQDCISEQDLDEMNIEIIRNTL 185
Query: 572 YRAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCG 751
Y+AY+E FY+FC LGG TA+ MC IL FEADRR+FIITINSF TELSKEDRA L+P CG
Sbjct: 186 YKAYLESFYKFCTLLGGTTADAMCPILEFEADRRAFIITINSFGTELSKEDRAKLFPHCG 245
Query: 752 RLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG-NDKSLEDKFLNTKLK 913
RLYPEGL+ LARADDYEQVK VADYY EYK +FEG G+ DK+LED+F ++K
Sbjct: 246 RLYPEGLAQLARADDYEQVKNVADYYPEYKLLFEGAGSNPGDKTLEDRFFEHEVK 300
>sp|P54641|VA0D_DICDI Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa accessory
protein) (DVA41)
Length = 356
Score = 346 bits (887), Expect = 6e-95
Identities = 171/288 (59%), Positives = 211/288 (73%), Gaps = 1/288 (0%)
Frame = +2
Query: 35 YYFNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLS 214
+ FN D GYLE ++RGFK GI+ + DY NL QC+ LED+K+H STDYG+FLA E P+
Sbjct: 13 FTFNKDDGYLEAILRGFKKGILSRADYNNLCQCDNLEDMKMHFISTDYGDFLAGEPSPIH 72
Query: 215 VSIIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELI 394
+ I EK KLV EF H+RNQ+VEPL+TF+D+I+Y YMIDN+ LLITGTLH R I+EL+
Sbjct: 73 TTTIAEKATGKLVSEFNHIRNQAVEPLSTFMDFISYGYMIDNVVLLITGTLHERDISELV 132
Query: 395 AKCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLY 574
KCHPLG F+ M L + A+LYN VL+DTPLAPY C+SE+DL E + EIIRNTLY
Sbjct: 133 DKCHPLGLFKSMATLSVVHNVADLYNNVLIDTPLAPYIQGCLSEEDLDEMNNEIIRNTLY 192
Query: 575 RAYIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFD-TELSKEDRANLYPKCG 751
+AY+EDFY +CK LGG T IM +IL FEADRRS ITINSF TELSK+DR LYP G
Sbjct: 193 KAYLEDFYNYCKYLGGQTELIMSDILKFEADRRSINITINSFGATELSKDDREKLYPSLG 252
Query: 752 RLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKF 895
LYPEG S L +A+D +QV+ + + YS Y+ F G N+KSLED F
Sbjct: 253 LLYPEGTSKLGKAEDVDQVRGILEVYSTYRNFFSD-GVNNEKSLEDSF 299
>sp|Q9LJI5|VA0D1_ARATH Probable vacuolar ATP synthase subunit d 1 (V-ATPase d subunit 1)
(Vacuolar proton pump d subunit 1)
Length = 351
Score = 317 bits (811), Expect = 4e-86
Identities = 150/291 (51%), Positives = 205/291 (70%)
Frame = +2
Query: 41 FNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLSVS 220
FNI GYLE +VRG + G++ DY NL QCE L+D+K+HL +T YG++L NE PL +
Sbjct: 9 FNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGSYLQNEPSPLHTT 68
Query: 221 IIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELIAK 400
I EK KLV +++H+ Q+ EP++TFL+YI Y +MIDN+ L++TGTLH R + ELI K
Sbjct: 69 TIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEK 128
Query: 401 CHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYRA 580
CHPLG F+ + L ++ ELY VLVDTPLAPYF +C++ +DL + +IEI+RNTLY+A
Sbjct: 129 CHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKA 188
Query: 581 YIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRLY 760
Y+EDFY+FC+ LGG TAEIM ++LAFEADRR+ ITINS TEL++EDR LY G LY
Sbjct: 189 YLEDFYKFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKLYSNFGLLY 248
Query: 761 PEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFLNTKLK 913
P G LA +D +QV+ V + Y Y+AIF + G + L+ F +++
Sbjct: 249 PYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 299
>sp|Q9LHA4|VA0D2_ARATH Probable vacuolar ATP synthase subunit d 2 (V-ATPase d subunit 2)
(Vacuolar proton pump d subunit 2)
Length = 351
Score = 315 bits (807), Expect = 1e-85
Identities = 150/291 (51%), Positives = 203/291 (69%)
Frame = +2
Query: 41 FNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLSVS 220
FNI GYLE +VRG + G++ DY NL QCE L+D+K+HL +T YG +L NE PL +
Sbjct: 9 FNIHGGYLEAIVRGHRAGLLTTADYNNLCQCENLDDIKMHLSATKYGPYLQNEPSPLHTT 68
Query: 221 IIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELIAK 400
I EK KLV +++H+ Q+ EP++TFL+YI Y +MIDN+ L++TGTLH R + ELI K
Sbjct: 69 TIVEKCTLKLVDDYKHMLCQATEPMSTFLEYIRYGHMIDNVVLIVTGTLHERDVQELIEK 128
Query: 401 CHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYRA 580
CHPLG F+ + L ++ ELY VLVDTPLAPYF +C++ +DL + +IEI+RNTLY+A
Sbjct: 129 CHPLGMFDSIATLAVAQNMRELYRLVLVDTPLAPYFSECLTSEDLDDMNIEIMRNTLYKA 188
Query: 581 YIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRLY 760
Y+EDFY FC+ LGG TAEIM ++LAFEADRR+ ITINS TEL++EDR LY G LY
Sbjct: 189 YLEDFYNFCQKLGGATAEIMSDLLAFEADRRAVNITINSIGTELTREDRKKLYSNFGLLY 248
Query: 761 PEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFLNTKLK 913
P G LA +D +QV+ V + Y Y+AIF + G + L+ F +++
Sbjct: 249 PYGHEELAICEDIDQVRGVMEKYPPYQAIFSKMSYGESQMLDKAFYEEEVR 299
>sp|O13753|VA0D_SCHPO Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 343
Score = 306 bits (785), Expect = 4e-83
Identities = 155/285 (54%), Positives = 203/285 (71%)
Frame = +2
Query: 41 FNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLSVS 220
FN + GY+E LVRG++ +++Q+ Y NL QCE+LED +L L STDYG FLAN++ L+ S
Sbjct: 6 FNTNSGYIEALVRGYESALLEQHIYSNLSQCESLEDFRLQLSSTDYGGFLANQS-KLTSS 64
Query: 221 IIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELIAK 400
II K EKL+ EF +R Q+ E L+ F+DYITY+YMIDNI LL+TGT++G+ +L+ +
Sbjct: 65 IISAKATEKLLDEFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTHDLLER 124
Query: 401 CHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYRA 580
CHPLG FE + AL +++ ELY+ VL++TPLAPYF DC+S DL E IEIIRNTLY+A
Sbjct: 125 CHPLGWFETLPALCVATNVEELYSVVLIETPLAPYFKDCLSADDLDEQHIEIIRNTLYKA 184
Query: 581 YIEDFYEFCKSLGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKCGRLY 760
Y+EDFY FCK +G TA+ M IL FEADRR+ ITINSF TELSKE+RA +YP GRLY
Sbjct: 185 YLEDFYNFCKKIGACTADTMLPILEFEADRRAITITINSFGTELSKEERAKMYPSFGRLY 244
Query: 761 PEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKF 895
P S+LARA++ V+ EY F+ + KSL+D F
Sbjct: 245 PFSTSILARAENAGDVENACSLVKEYSDFFD---QNSQKSLDDHF 286
>sp|P53659|VA0D_NEUCR Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 41 kDa subunit)
Length = 364
Score = 292 bits (748), Expect = 8e-79
Identities = 150/309 (48%), Positives = 205/309 (66%), Gaps = 18/309 (5%)
Frame = +2
Query: 41 FNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGPLSVS 220
FN++ GY+EG+VRG++ ++ +Y N+ QCE+++DLKL L YG+FLA+ S S
Sbjct: 6 FNVNNGYIEGIVRGYRNSLLTSTNYTNMTQCESIDDLKLQLGPA-YGDFLASLPPKPSTS 64
Query: 221 IIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELIAK 400
+ K +KLV EF+++R + LA F+DY+TY YMIDN+ALLITGTLH R EL+ +
Sbjct: 65 ALAAKTTDKLVSEFRYVRANAAGSLAKFMDYLTYGYMIDNVALLITGTLHERDTRELLER 124
Query: 401 CHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCISEQDLGEFDIEIIRNTLYRA 580
CHPLG FE M L +++ ELYN+V+++TPLAPYF +S QDL E +IEI+RNTLY+
Sbjct: 125 CHPLGWFETMPVLCVATNIEELYNSVMIETPLAPYFKSSLSLQDLDELNIEIVRNTLYKN 184
Query: 581 YIEDFYEFCKS----LGGITAEIMCEILAFEADRRSFIITINSFDTELSKEDRANLYPKC 748
Y+EDFY F + G TAE+M E+L FEADRR+ IT+NSF TELSK DR LYP
Sbjct: 185 YLEDFYHFVNTHPDMAGTPTAEVMSELLEFEADRRAINITLNSFGTELSKADRKKLYPNF 244
Query: 749 GRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTG--------------NDKSLE 886
G+LYPEG ML+RADD+E V+ + ++YK+ F+ G G KSLE
Sbjct: 245 GQLYPEGTLMLSRADDFEGVRLAVEGVADYKSFFDAAGLGGGPSGPGNMGGGGTEGKSLE 304
Query: 887 DKFLNTKLK 913
D F +++
Sbjct: 305 DMFYQKEME 313
>sp|P32366|VA0D_YEAST Vacuolar ATP synthase subunit d (V-ATPase d subunit) (Vacuolar
proton pump d subunit) (V-ATPase 39 kDa subunit)
(V-ATPase subunit M39)
Length = 345
Score = 259 bits (662), Expect = 8e-69
Identities = 138/296 (46%), Positives = 194/296 (65%), Gaps = 4/296 (1%)
Frame = +2
Query: 38 YFNIDCGYLEGLVRGFKCGIIKQNDYYNLVQCETLEDLKLHLQSTDYGNFLANEAGP-LS 214
YFNID G++EG+VRG++ G++ N Y NL QC+TLEDLKL L STDYGNFL++ + L+
Sbjct: 5 YFNIDNGFIEGVVRGYRNGLLSNNQYINLTQCDTLEDLKLQLSSTDYGNFLSSVSSESLT 64
Query: 215 VSIIEEKIREKLVLEFQHLRNQSVEPLATFLDYITYSYMIDNIALLITGTLHGRPITELI 394
S+I+E KL EF ++R+QS F+DYITY YMIDN+AL+ITGT+H R E++
Sbjct: 65 TSLIQEYASSKLYHEFNYIRDQSSGSTRKFMDYITYGYMIDNVALMITGTIHDRDKGEIL 124
Query: 395 AKCHPLGSFEQMEALHISSTPAELYNAVLVDTPLAPYFIDCI-SEQDLGEFDIEIIRNTL 571
+CHPLG F+ + L +++ LY VLVDTPLAPYF +C + ++L + +IEIIRN L
Sbjct: 125 QRCHPLGWFDTLPTLSVATDLESLYETVLVDTPLAPYFKNCFDTAEELDDMNIEIIRNKL 184
Query: 572 YRAYIEDFYEF-CKSLGGITAEIMCEILAFEADRRSFIITINSF-DTELSKEDRANLYPK 745
Y+AY+EDFY F + + E M +L FEADRRS I +NS +++ + +++L P
Sbjct: 185 YKAYLEDFYNFVTEEIPEPAKECMQTLLGFEADRRSINIALNSLQSSDIDPDLKSDLLPN 244
Query: 746 CGRLYPEGLSMLARADDYEQVKAVADYYSEYKAIFEGVGTGNDKSLEDKFLNTKLK 913
G+LYP LA+A D+E V+A EY+ E TGN LED F +++
Sbjct: 245 IGKLYPLATFHLAQAQDFEGVRAALANVYEYRGFLE---TGN---LEDHFYQLEME 294
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,590,481
Number of Sequences: 369166
Number of extensions: 1904571
Number of successful extensions: 4883
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4868
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9750928390
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)