Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_P19
(399 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 244 3e-65
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 >gi|54039461... 243 1e-64
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 243 1e-64
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 242 2e-64
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 241 4e-64
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 241 4e-64
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 >gi|52000789... 240 6e-64
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 239 2e-63
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 238 2e-63
sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23 230 7e-61
>sp|Q19877|RS23_CAEEL 40S ribosomal protein S23
Length = 143
Score = 244 bits (624), Expect = 3e-65
Identities = 116/131 (88%), Positives = 127/131 (96%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
L+ HR+++RW DK YKKAH+GTR+KSNPFGGASHAKGIVLEK+GVEAKQPNSAIRKCVRV
Sbjct: 13 LKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVPNDGCLNF+EENDEVLVSGFGRSGHAVGDIPGVRFKIVKVAN SL+A
Sbjct: 73 QLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIA 132
Query: 362 LYKGKKERPRA 394
L+KGKKERPR+
Sbjct: 133 LFKGKKERPRS 143
>sp|P62267|RS23_MOUSE 40S ribosomal protein S23
sp|P62298|RS23_CHILA 40S ribosomal protein S23
sp|P62266|RS23_HUMAN 40S ribosomal protein S23
sp|P62268|RS23_RAT 40S ribosomal protein S23
Length = 143
Score = 243 bits (620), Expect = 1e-64
Identities = 117/131 (89%), Positives = 124/131 (94%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
LR HR+ ++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13 LRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLA
Sbjct: 73 QLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLA 132
Query: 362 LYKGKKERPRA 394
LYKGKKERPR+
Sbjct: 133 LYKGKKERPRS 143
>sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23
Length = 143
Score = 243 bits (620), Expect = 1e-64
Identities = 117/131 (89%), Positives = 125/131 (95%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
LR HR++++W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13 LRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLA
Sbjct: 73 QLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLA 132
Query: 362 LYKGKKERPRA 394
LYKGKKERPR+
Sbjct: 133 LYKGKKERPRS 143
>sp|Q6SA96|RS23_PIG 40S ribosomal protein S23
Length = 143
Score = 242 bits (618), Expect = 2e-64
Identities = 117/131 (89%), Positives = 123/131 (93%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
LR HR+ +W DK YKKAHLGT K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13 LRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLA
Sbjct: 73 QLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLA 132
Query: 362 LYKGKKERPRA 394
LYKGKKERPR+
Sbjct: 133 LYKGKKERPRS 143
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23
Length = 143
Score = 241 bits (615), Expect = 4e-64
Identities = 116/130 (89%), Positives = 124/130 (95%)
Frame = +2
Query: 5 RLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 184
R HR+ +RW DKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ
Sbjct: 14 RSHRRDQRWHDKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQ 73
Query: 185 LIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLAL 364
LIKNGKKITAFVP DGCLN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLAL
Sbjct: 74 LIKNGKKITAFVPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLAL 133
Query: 365 YKGKKERPRA 394
YK KKERPR+
Sbjct: 134 YKEKKERPRS 143
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23
Length = 143
Score = 241 bits (615), Expect = 4e-64
Identities = 116/131 (88%), Positives = 126/131 (96%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
L+ HR+++RW DKDYKK+HLGTR+KSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13 LKNHRREQRWHDKDYKKSHLGTRWKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVP DGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFK+VKVA+VSLLA
Sbjct: 73 QLIKNGKKITAFVPRDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVASVSLLA 132
Query: 362 LYKGKKERPRA 394
LYK KKERPR+
Sbjct: 133 LYKQKKERPRS 143
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23
Length = 143
Score = 240 bits (613), Expect = 6e-64
Identities = 114/128 (89%), Positives = 124/128 (96%)
Frame = +2
Query: 11 HRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 190
HR+++RWADKDYKKAH+GTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRREQRWADKDYKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75
Query: 191 KNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 370
KNGKK+TAFVP DGCLN IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 371 GKKERPRA 394
KKERPR+
Sbjct: 136 EKKERPRS 143
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23
Length = 143
Score = 239 bits (609), Expect = 2e-63
Identities = 115/131 (87%), Positives = 124/131 (94%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
L+ HR+ +RW DK YKKAHLGTR+K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13 LKTHRQAQRWNDKGYKKAHLGTRWKANPFGTASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVPNDGCLNFIEENDEVLV+GFGR GHAVGDIPGVRFKIVKVAN SL+A
Sbjct: 73 QLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIA 132
Query: 362 LYKGKKERPRA 394
L+KGKKERPR+
Sbjct: 133 LFKGKKERPRS 143
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23
Length = 143
Score = 238 bits (608), Expect = 2e-63
Identities = 115/128 (89%), Positives = 123/128 (96%)
Frame = +2
Query: 11 HRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 190
HR+ +RWADKDYKKAHLGTR+K+NPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI
Sbjct: 16 HRRDQRWADKDYKKAHLGTRWKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLI 75
Query: 191 KNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLALYK 370
KNGKKITAFVP DG LN+IEENDEVLV+GFGR GHAVGDIPGVRFK+VKVANVSLLALYK
Sbjct: 76 KNGKKITAFVPRDGSLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYK 135
Query: 371 GKKERPRA 394
KKERPR+
Sbjct: 136 EKKERPRS 143
>sp|Q9DFR4|RS23_GILMI 40S ribosomal protein S23
Length = 143
Score = 230 bits (587), Expect = 7e-61
Identities = 110/131 (83%), Positives = 121/131 (92%)
Frame = +2
Query: 2 LRLHRKKERWADKDYKKAHLGTRFKSNPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRV 181
LR HR++++W DK YKKAHLGT K+NPFG ASHAKGIVLEKVGVEAKQPNSAIRKCVRV
Sbjct: 13 LRNHRREQKWHDKQYKKAHLGTALKANPFGSASHAKGIVLEKVGVEAKQPNSAIRKCVRV 72
Query: 182 QLIKNGKKITAFVPNDGCLNFIEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANVSLLA 361
QLIKNGKKITAFVPNDGCLNF EENDEVLV+GFGR HAVGDIPGVRFK+V++ANVSLLA
Sbjct: 73 QLIKNGKKITAFVPNDGCLNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLA 132
Query: 362 LYKGKKERPRA 394
LYKG KERP++
Sbjct: 133 LYKGXKERPKS 143
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 45,341,202
Number of Sequences: 369166
Number of extensions: 839715
Number of successful extensions: 3010
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2778
length of database: 68,354,980
effective HSP length: 98
effective length of database: 50,250,950
effective search space used: 1708532300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)