Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_P09
(868 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 551 e-157
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 550 e-156
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 550 e-156
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 549 e-156
sp|P18258|TBA1_PARLI Tubulin alpha-1 chain 548 e-156
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 548 e-156
sp|P06605|TBA3_DROME Tubulin alpha-3 chain 548 e-156
sp|P52273|TBA_BOMMO Tubulin alpha chain 547 e-155
sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6) 546 e-155
sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6... 546 e-155
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 551 bits (1420), Expect = e-157
Identities = 272/288 (94%), Positives = 275/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL
Sbjct: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 550 bits (1417), Expect = e-156
Identities = 272/288 (94%), Positives = 275/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL
Sbjct: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLAD CTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRIRKLADLCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 550 bits (1417), Expect = e-156
Identities = 270/288 (93%), Positives = 276/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKEI+DL
Sbjct: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKEIIDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQI
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAIYPAPQI 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYM+CCMLYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMSCCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 549 bits (1415), Expect = e-156
Identities = 268/288 (93%), Positives = 276/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DL
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P18258|TBA1_PARLI Tubulin alpha-1 chain
Length = 452
Score = 548 bits (1411), Expect = e-156
Identities = 268/288 (93%), Positives = 276/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYT+GKE++D+
Sbjct: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTVGKELIDI 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQI
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFSSLLMERLSVDYGKKSKLEFAVYPAPQI 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+V+EITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVSEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 548 bits (1411), Expect = e-156
Identities = 269/288 (93%), Positives = 274/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL
Sbjct: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDR+RKL+DQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRVRKLSDQCTGLQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHE LSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEMLSVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P06605|TBA3_DROME Tubulin alpha-3 chain
Length = 450
Score = 548 bits (1411), Expect = e-156
Identities = 272/288 (94%), Positives = 274/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL
Sbjct: 58 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFAVYPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAVYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVK DPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKVDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 547 bits (1410), Expect = e-155
Identities = 270/288 (93%), Positives = 274/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRA+FVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL
Sbjct: 58 AGKHVPRALFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFLIFH LLMERLSVDYGKKSKLEFA+YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLIFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFAIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIE PTYTNLNRLIGQIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIEPPTYTNLNRLIGQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPL TYAPVISAEKAYHEQLSVAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|Q9BQE3|TBA6_HUMAN Tubulin alpha-6 chain (Alpha-tubulin 6)
Length = 449
Score = 546 bits (1406), Expect = e-155
Identities = 266/288 (92%), Positives = 275/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DL
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
>sp|P68373|TBA6_MOUSE Tubulin alpha-6 chain (Alpha-tubulin 6) (Alpha-tubulin isotype
M-alpha-6)
sp|P68365|TBA3_CRIGR Tubulin alpha-3 chain (Alpha-tubulin 3) (Alpha-tubulin III)
Length = 449
Score = 546 bits (1406), Expect = e-155
Identities = 266/288 (92%), Positives = 275/288 (95%)
Frame = +3
Query: 3 AGKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDL 182
AGKHVPRAVFVDLEPTV+DEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEI+DL
Sbjct: 58 AGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIIDL 117
Query: 183 VLDRIRKLADQCTGLQGFLIFHXXXXXXXXXXXXLLMERLSVDYGKKSKLEFAVYPAPQI 362
VLDRIRKLADQCTGLQGFL+FH LLMERLSVDYGKKSKLEF++YPAPQ+
Sbjct: 118 VLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPAPQV 177
Query: 363 ATAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSS 542
+TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLI QIVSS
Sbjct: 178 STAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSS 237
Query: 543 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFE 722
ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQL+VAEITNACFE
Sbjct: 238 ITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLTVAEITNACFE 297
Query: 723 PANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVD 866
PANQMVKCDPRHGKYMACC+LYRGDVVPKDVNAAIATIKTKRTIQFVD
Sbjct: 298 PANQMVKCDPRHGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD 345
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,656,233
Number of Sequences: 369166
Number of extensions: 1900942
Number of successful extensions: 5001
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4875
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8550075140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)