Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_P04
(145 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34666|COQ5_CAEEL Ubiquinone biosynthesis methyltransfer... 65 6e-11
sp|P87230|COQ5_SCHPO Ubiquinone biosynthesis methyltransfer... 62 4e-10
sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis me... 59 3e-09
sp|Q9X3X2|UBIE_ZYMMO Ubiquinone/menaquinone biosynthesis me... 59 4e-09
sp|P55905|A41_LEIDO Putative ubiquinone biosynthesis methyl... 58 6e-09
sp|Q73HZ4|UBIE_WOLPM Ubiquinone/menaquinone biosynthesis me... 56 2e-08
sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis me... 54 1e-07
sp|Q6NDM2|UBIE_RHOPA Ubiquinone/menaquinone biosynthesis me... 53 2e-07
sp|Q98GV1|UBIE_RHILO Ubiquinone/menaquinone biosynthesis me... 53 2e-07
sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis me... 53 2e-07
>sp|P34666|COQ5_CAEEL Ubiquinone biosynthesis methyltransferase coq-5
Length = 285
Score = 64.7 bits (156), Expect = 6e-11
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSCCLDVAGGTGDVAFRIV 129
NDAMS GVHRLWKDY+V + ++ CLD+AGGTGD+AFRI+
Sbjct: 72 NDAMSMGVHRLWKDYYVGGLQVPYNAKCLDMAGGTGDIAFRIL 114
>sp|P87230|COQ5_SCHPO Ubiquinone biosynthesis methyltransferase coq5
Length = 305
Score = 62.0 bits (149), Expect = 4e-10
Identities = 30/51 (58%), Positives = 37/51 (72%), Gaps = 3/51 (5%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSC---CLDVAGGTGDVAFRIVNSHIN 144
NDAMS G+HRLWK+ FVS++ P + LDVAGGTGD+AFRI+N N
Sbjct: 80 NDAMSLGIHRLWKNIFVSRLNPGNSTVPMKILDVAGGTGDIAFRILNHATN 130
>sp|Q8UIH5|UBIE_AGRT5 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 259
Score = 59.3 bits (142), Expect = 3e-09
Identities = 29/47 (61%), Positives = 34/47 (72%), Gaps = 2/47 (4%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSC--CLDVAGGTGDVAFRIVNS 135
ND MS G+HRLWKD VS + P +D LDVAGGTGDVAFRI+ +
Sbjct: 46 NDVMSAGLHRLWKDAMVSALSPRKDPSYKILDVAGGTGDVAFRIIEA 92
>sp|Q9X3X2|UBIE_ZYMMO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 242
Score = 58.5 bits (140), Expect = 4e-09
Identities = 27/48 (56%), Positives = 32/48 (66%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSCCLDVAGGTGDVAFRIVNSHIN 144
NDAMS G+HRLWKD FV + P LD+AGGTGD+AFR+ N
Sbjct: 35 NDAMSGGLHRLWKDDFVRLVQPKASEHILDMAGGTGDIAFRLAKYGTN 82
>sp|P55905|A41_LEIDO Putative ubiquinone biosynthesis methyltransferase A41
(Amastigote-specific protein A41)
Length = 288
Score = 58.2 bits (139), Expect = 6e-09
Identities = 27/46 (58%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSK-IMPLRDSCCLDVAGGTGDVAFRIVNS 135
ND +S G+HR+WK +FV + PL S LDVAGGTGD+AFRI +S
Sbjct: 33 NDVLSLGIHRIWKKHFVEDCVCPLPGSKFLDVAGGTGDIAFRITDS 78
>sp|Q73HZ4|UBIE_WOLPM Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 238
Score = 56.2 bits (134), Expect = 2e-08
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSCCLDVAGGTGDVAFRIV 129
ND MS G+HRLWKD V+ + ++S LDVAGGTGD+A R+V
Sbjct: 28 NDIMSLGMHRLWKDKMVNSVHFTKNSKVLDVAGGTGDIAIRVV 70
>sp|Q92SK7|UBIE_RHIME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 258
Score = 53.9 bits (128), Expect = 1e-07
Identities = 26/45 (57%), Positives = 32/45 (71%), Gaps = 2/45 (4%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMP--LRDSCCLDVAGGTGDVAFRIV 129
ND MS G+HR+WKD ++ + P D LDVAGGTGD+AFRIV
Sbjct: 45 NDVMSAGLHRVWKDAMIAALNPPGREDYRVLDVAGGTGDIAFRIV 89
>sp|Q6NDM2|UBIE_RHOPA Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 253
Score = 53.1 bits (126), Expect = 2e-07
Identities = 25/44 (56%), Positives = 31/44 (70%), Gaps = 3/44 (6%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSC---CLDVAGGTGDVAFR 123
ND MS G+HRLWKD ++ + P RD LDVAGGTGD++FR
Sbjct: 39 NDLMSGGMHRLWKDVMITTLNPPRDDTPFRLLDVAGGTGDISFR 82
>sp|Q98GV1|UBIE_RHILO Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 258
Score = 53.1 bits (126), Expect = 2e-07
Identities = 30/51 (58%), Positives = 36/51 (70%), Gaps = 3/51 (5%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDSC--CLDVAGGTGDVAFRIVN-SHIN 144
ND MS G+HRLWKD V+ + P + LDVAGGTGD+AFRIV+ SH N
Sbjct: 45 NDLMSAGLHRLWKDAMVTWLNPPKRPGWKVLDVAGGTGDIAFRIVDASHGN 95
>sp|Q8YDE4|UBIE_BRUME Ubiquinone/menaquinone biosynthesis methyltransferase ubiE
Length = 269
Score = 52.8 bits (125), Expect = 2e-07
Identities = 26/47 (55%), Positives = 33/47 (70%), Gaps = 2/47 (4%)
Frame = +1
Query: 1 NDAMSFGVHRLWKDYFVSKIMPLRDS--CCLDVAGGTGDVAFRIVNS 135
ND MS G+HR+WKD V+ + P + LDVAGGTGD+AFRIV +
Sbjct: 56 NDLMSAGMHRVWKDAMVAWLAPSKRPGWTSLDVAGGTGDIAFRIVEA 102
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,789,376
Number of Sequences: 369166
Number of extensions: 208289
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 68,354,980
effective HSP length: 21
effective length of database: 64,475,545
effective search space used: 1676364170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)