Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_O22
(813 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O13923|CORO_SCHPO Coronin-like protein crn1 94 6e-19
sp|Q92828|COR2A_HUMAN Coronin-2A (WD repeat-containing prot... 89 1e-17
sp|Q8BH44|COR2B_MOUSE Coronin-2B 87 4e-17
sp|Q9UQ03|COR2B_HUMAN Coronin-2B (Coronin-like protein C) (... 87 4e-17
sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E) 86 9e-17
sp|Q920J3|CORO6_RAT Coronin-6 86 9e-17
sp|Q8C0P5|COR2A_MOUSE Coronin-2A 86 1e-16
sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57)... 82 1e-15
sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57)... 82 1e-15
sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3) 81 4e-15
>sp|O13923|CORO_SCHPO Coronin-like protein crn1
Length = 601
Score = 93.6 bits (231), Expect = 6e-19
Identities = 57/181 (31%), Positives = 88/181 (48%), Gaps = 2/181 (1%)
Frame = +1
Query: 34 YLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYANGFCEVIPIICPRREQGFSEEVY 213
YL ++S PQ G+ +PK GVNV+ NE+ R +K + E I I PRR + F ++Y
Sbjct: 305 YLSEFKSVDPQRGIAFLPKRGVNVSENEVMRAYKSVNDSIIEPISFIVPRRSESFQSDIY 364
Query: 214 PPTPSRVPSLTIDEWINGADADPILISLETGEVSMES--KSTTSNVQRPKNAQQKINEVM 387
PP PS PSLT +EW +G DA P L+ + T S + K+ ++ V QK NE
Sbjct: 365 PPAPSGKPSLTAEEWASGKDAQPDLLDMSTLYESKGTVEKAVSATVPSAGAQVQKHNEEK 424
Query: 388 LLIHQFNSDENGNEHSLSDYQTLIKNIQEAITGEIHKPQEPEKTVIQDPPKQLENSLHQY 567
+ + + ++ Q K + KP P + +++P K+ + HQ
Sbjct: 425 VETPKPEAQPVSKPKESAEEQKPSKEPEV-------KPTTPSASKVEEPSKKRDEDNHQK 477
Query: 568 E 570
E
Sbjct: 478 E 478
>sp|Q92828|COR2A_HUMAN Coronin-2A (WD repeat-containing protein 2) (IR10)
Length = 525
Score = 89.0 bits (219), Expect = 1e-17
Identities = 42/97 (43%), Positives = 60/97 (61%), Gaps = 1/97 (1%)
Frame = +1
Query: 19 KPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYAN-GFCEVIPIICPRREQG 195
KP + YL Y+S PQ G+ MPK G++V++ E+ R +K E I +I PRR +
Sbjct: 304 KPHLSYLTEYRSYNPQKGIGVMPKRGLDVSSCEIFRFYKLITTKSLIEPISMIVPRRSES 363
Query: 196 FSEEVYPPTPSRVPSLTIDEWINGADADPILISLETG 306
+ E++YPPT PSLT EW++G + DPIL+SL G
Sbjct: 364 YQEDIYPPTAGAQPSLTAQEWLSGMNRDPILVSLRPG 400
>sp|Q8BH44|COR2B_MOUSE Coronin-2B
Length = 475
Score = 87.4 bits (215), Expect = 4e-17
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +1
Query: 19 KPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYA-NGFCEVIPIICPRREQG 195
KP + YL ++S PQ G+ MPK G++V+A E+ R +K G E I +I PRR
Sbjct: 299 KPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDS 358
Query: 196 FSEEVYPPTPSRVPSLTIDEWINGADADPILISLETG 306
+ E++YP TP P+LT DEW+ G + DP+L+SL+ G
Sbjct: 359 YQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEG 395
>sp|Q9UQ03|COR2B_HUMAN Coronin-2B (Coronin-like protein C) (ClipinC) (Protein FC96)
Length = 475
Score = 87.4 bits (215), Expect = 4e-17
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 1/97 (1%)
Frame = +1
Query: 19 KPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYA-NGFCEVIPIICPRREQG 195
KP + YL ++S PQ G+ MPK G++V+A E+ R +K G E I +I PRR
Sbjct: 299 KPYLSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTLKGLIEPISMIVPRRSDS 358
Query: 196 FSEEVYPPTPSRVPSLTIDEWINGADADPILISLETG 306
+ E++YP TP P+LT DEW+ G + DP+L+SL+ G
Sbjct: 359 YQEDIYPMTPGTEPALTPDEWLGGINRDPVLMSLKEG 395
>sp|Q920M5|CORO6_MOUSE Coronin-6 (Clipin E)
Length = 471
Score = 86.3 bits (212), Expect = 9e-17
Identities = 43/104 (41%), Positives = 65/104 (62%)
Frame = +1
Query: 1 EVVYEPKPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYANGFCEVIPIICP 180
E+ EP P + YL + S +PQ G+ MPK G++V+ E+ R +K + CE I + P
Sbjct: 295 EITEEP-PFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERK-CEPIIMTVP 352
Query: 181 RREQGFSEEVYPPTPSRVPSLTIDEWINGADADPILISLETGEV 312
R+ F +++YP TP P+L DEW++G DA+P+LISL+ G V
Sbjct: 353 RKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLKEGYV 396
>sp|Q920J3|CORO6_RAT Coronin-6
Length = 472
Score = 86.3 bits (212), Expect = 9e-17
Identities = 43/104 (41%), Positives = 65/104 (62%)
Frame = +1
Query: 1 EVVYEPKPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYANGFCEVIPIICP 180
E+ EP P + YL + S +PQ G+ MPK G++V+ E+ R +K + CE I + P
Sbjct: 295 EITDEP-PFVHYLNTFSSKEPQRGMGFMPKRGLDVSKCEIARFYKLHERK-CEPIVMTVP 352
Query: 181 RREQGFSEEVYPPTPSRVPSLTIDEWINGADADPILISLETGEV 312
R+ F +++YP TP P+L DEW++G DA+P+LISL+ G V
Sbjct: 353 RKSDLFQDDLYPDTPGPEPALEADEWLSGQDAEPVLISLKEGYV 396
>sp|Q8C0P5|COR2A_MOUSE Coronin-2A
Length = 524
Score = 85.9 bits (211), Expect = 1e-16
Identities = 40/105 (38%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Frame = +1
Query: 19 KPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYAN-GFCEVIPIICPRREQG 195
KP + YL Y+S PQ G+ MPK G++V++ E+ R +K E + +I PRR +
Sbjct: 304 KPHLTYLTEYRSYNPQKGIGIMPKRGLDVSSCEIFRFYKLITTKSLIEPVSMIVPRRSES 363
Query: 196 FSEEVYPPTPSRVPSLTIDEWINGADADPILISLETGEVSMESKS 330
+ E++YPPT + PSLT EW++G + PI++SL G ++S++
Sbjct: 364 YQEDIYPPTAAAQPSLTAHEWLSGMNRGPIMMSLRPGSELLDSQT 408
>sp|P31146|COR1A_HUMAN Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 82.4 bits (202), Expect = 1e-15
Identities = 42/107 (39%), Positives = 61/107 (57%)
Frame = +1
Query: 22 PTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYANGFCEVIPIICPRREQGFS 201
P + YL + S + Q G+ MPK G+ V E+ R +K + CE I + PR+ F
Sbjct: 302 PFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERR-CEPIAMTVPRKSDLFQ 360
Query: 202 EEVYPPTPSRVPSLTIDEWINGADADPILISLETGEVSMESKSTTSN 342
E++YPPT P+LT +EW+ G DA P+LISL+ G V +S+ N
Sbjct: 361 EDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPKSRELRVN 407
>sp|O89053|COR1A_MOUSE Coronin-1A (Coronin-like protein p57) (Coronin-like protein A)
(CLIPINA) (Tryptophan aspartate-containing coat protein)
(TACO)
Length = 461
Score = 82.4 bits (202), Expect = 1e-15
Identities = 42/107 (39%), Positives = 61/107 (57%)
Frame = +1
Query: 22 PTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYANGFCEVIPIICPRREQGFS 201
P + YL + S + Q G+ MPK G+ V E+ R +K + CE I + PR+ F
Sbjct: 302 PFLHYLSMFSSKESQRGMGYMPKRGLEVNKCEIARFYKLHERK-CEPIAMTVPRKSDLFQ 360
Query: 202 EEVYPPTPSRVPSLTIDEWINGADADPILISLETGEVSMESKSTTSN 342
E++YPPT P+LT +EW+ G DA P+LISL+ G V +S+ N
Sbjct: 361 EDLYPPTAGPDPALTAEEWLGGRDAGPLLISLKDGYVPPKSRELRVN 407
>sp|Q9WUM4|COR1C_MOUSE Coronin-1C (Coronin-3)
Length = 474
Score = 80.9 bits (198), Expect = 4e-15
Identities = 52/165 (31%), Positives = 84/165 (50%), Gaps = 4/165 (2%)
Frame = +1
Query: 7 VYEPKPTIQYLCCYQSAKPQNGVIAMPKLGVNVAANELTRLFKFYANGFCEVIPIICPRR 186
+ + P + YL + S +PQ G+ MPK G++V E+ R FK + CE I + PR+
Sbjct: 295 ITDESPYVHYLNTFSSKEPQRGMGYMPKRGLDVNKCEIARFFKLHERK-CEPIIMTVPRK 353
Query: 187 EQGFSEEVYPPTPSRVPSLTIDEWINGADADPILISLETGEV---SMESKSTTSNVQRPK 357
F +++YP T +L +EW G +ADPILISL+ G + + + K N+ K
Sbjct: 354 SDLFQDDLYPDTAGPEAALEAEEWFEGKNADPILISLKHGYIPGKNRDLKVVKKNILDSK 413
Query: 358 NAQQKINEVMLLIHQ-FNSDENGNEHSLSDYQTLIKNIQEAITGE 489
A K +E+ + ++ NE L + IK+I+E I +
Sbjct: 414 PAANKKSELSCAPKKPTDTASVQNEAKLDEILKEIKSIKETICSQ 458
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,282,369
Number of Sequences: 369166
Number of extensions: 1486378
Number of successful extensions: 4763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4744
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 7763237265
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)