Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N17
(617 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3) 405 e-113
sp|P41340|ACT3_LIMPO Actin-3 405 e-113
sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic 405 e-113
sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic 405 e-113
sp|Q26065|ACT_PLAMG Actin, adductor muscle 405 e-113
sp|P10984|ACT2_CAEEL Actin-2 405 e-113
sp|P30163|ACT2_ONCVO Actin-2 405 e-113
sp|P30162|ACT1_ONCVO Actin-1 405 e-113
sp|P10986|ACT4_CAEEL Actin-4 404 e-113
sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cyt... 404 e-113
>sp|P53486|ACT3_FUGRU Actin, cytoplasmic 3 (Beta-actin-3)
Length = 375
Score = 405 bits (1042), Expect = e-113
Identities = 198/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TAS+SSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATASSSSSLEKSY 240
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVITIGNERFRCPEALFQPS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPS 265
>sp|P41340|ACT3_LIMPO Actin-3
Length = 376
Score = 405 bits (1041), Expect = e-113
Identities = 198/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGV+HTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDFD EM TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFDQEMATAASSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVITIGNERFRCPEALFQPS
Sbjct: 242 ELPDGQVITIGNERFRCPEALFQPS 266
>sp|Q964E0|ACTC_BIOTE Actin, cytoplasmic
Length = 376
Score = 405 bits (1041), Expect = e-113
Identities = 197/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TAS SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTASTSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVITIGNERFRCPEA+FQPS
Sbjct: 242 ELPDGQVITIGNERFRCPEAMFQPS 266
>sp|Q964E1|ACTC_BIOOB Actin, cytoplasmic
Length = 376
Score = 405 bits (1041), Expect = e-113
Identities = 197/205 (96%), Positives = 203/205 (99%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAI+RLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM+TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMQTATSSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVITIGNERFRCPEALFQPS
Sbjct: 242 ELPDGQVITIGNERFRCPEALFQPS 266
>sp|Q26065|ACT_PLAMG Actin, adductor muscle
Length = 376
Score = 405 bits (1041), Expect = e-113
Identities = 198/205 (96%), Positives = 203/205 (99%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVITIGNERFRCPE+LFQPS
Sbjct: 242 ELPDGQVITIGNERFRCPESLFQPS 266
>sp|P10984|ACT2_CAEEL Actin-2
Length = 376
Score = 405 bits (1040), Expect = e-113
Identities = 197/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVIT+GNERFRCPEALFQPS
Sbjct: 242 ELPDGQVITVGNERFRCPEALFQPS 266
>sp|P30163|ACT2_ONCVO Actin-2
Length = 376
Score = 405 bits (1040), Expect = e-113
Identities = 197/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVIT+GNERFRCPEALFQPS
Sbjct: 242 ELPDGQVITVGNERFRCPEALFQPS 266
>sp|P30162|ACT1_ONCVO Actin-1
Length = 376
Score = 405 bits (1040), Expect = e-113
Identities = 197/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVIT+GNERFRCPEALFQPS
Sbjct: 242 ELPDGQVITVGNERFRCPEALFQPS 266
>sp|P10986|ACT4_CAEEL Actin-4
Length = 376
Score = 404 bits (1039), Expect = e-113
Identities = 196/205 (95%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 62 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 121
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTG+VLDSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 122 QIMFETFNTPAMYVAIQAVLSLYASGRTTGVVLDSGDGVTHTVPIYEGYALPHAILRLDL 181
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSY
Sbjct: 182 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 241
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVIT+GNERFRCPEALFQPS
Sbjct: 242 ELPDGQVITVGNERFRCPEALFQPS 266
>sp|O93400|ACTB_XENLA Actin, cytoplasmic 1 (Beta-actin) (Cytoplasmic beta actin)
Length = 375
Score = 404 bits (1039), Expect = e-113
Identities = 197/205 (96%), Positives = 202/205 (98%)
Frame = +1
Query: 1 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 180
KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT
Sbjct: 61 KRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 120
Query: 181 QIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAILRLDL 360
QIMFETFN PAMYVAIQAVLSLYASGRTTGIV+DSGDGVTHTVPIYEGYALPHAILRLDL
Sbjct: 121 QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDL 180
Query: 361 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYIALDFDAEMRTASASSSLEKSY 540
AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY+ALDF+ EM TA++SSSLEKSY
Sbjct: 181 AGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLEKSY 240
Query: 541 ELPDGQVITIGNERFRCPEALFQPS 615
ELPDGQVITIGNERFRCPEALFQPS
Sbjct: 241 ELPDGQVITIGNERFRCPEALFQPS 265
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,565,106
Number of Sequences: 369166
Number of extensions: 1300114
Number of successful extensions: 4531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4424
length of database: 68,354,980
effective HSP length: 105
effective length of database: 48,957,805
effective search space used: 4895780500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)