Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N16
(442 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P07347|ARD1_YEAST N-terminal acetyltransferase complex A... 31 1.0
sp|Q8NHU3|SMS2_HUMAN Phosphatidylcholine:ceramide cholineph... 28 8.8
sp|Q8BQC3|PUNC_MOUSE Putative neuronal cell adhesion molecu... 28 8.8
sp|Q57007|Y1107_HAEIN Hypothetical Na(+)/H(+) antiporter HI... 28 8.8
sp|P07706|NU5M_DROYA NADH-ubiquinone oxidoreductase chain 5... 28 8.8
sp|Q57593|Y129_METJA Hypothetical protein MJ0129 28 8.8
sp|Q9VS60|SMSR1_DROME Sphingomyelin synthase-related 1 28 8.8
>sp|P07347|ARD1_YEAST N-terminal acetyltransferase complex ARD1 subunit (Arrest-defective
protein 1)
Length = 238
Score = 31.2 bits (69), Expect = 1.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 285 NLILLY*QINNYNLPNSFPRNIYRFHLLFWVSSSFIINVIQLN 157
N I+ N +NLP ++ Y +H+L W +SF+ L+
Sbjct: 11 NDIICMQNANLHNLPENYMMKYYMYHILSWPEASFVATTTTLD 53
>sp|Q8NHU3|SMS2_HUMAN Phosphatidylcholine:ceramide cholinephosphotransferase 2
(Sphingomyelin synthase 2)
Length = 365
Score = 28.1 bits (61), Expect = 8.8
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 306 IFSGNFTNLILLY*QINNYNLPNSFPRNIYRFHLLFWVSSS 184
+FSG+ L L Y I Y+ PR+ + +HL+ W+ S+
Sbjct: 225 LFSGHTVTLTLTYLFIKEYS-----PRHFWWYHLICWLLSA 260
>sp|Q8BQC3|PUNC_MOUSE Putative neuronal cell adhesion molecule precursor
Length = 813
Score = 28.1 bits (61), Expect = 8.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 327 FLLKYTSIFSGNFTNLILLY*QINNYNLPNSFPRNIYRFHLL 202
F L Y + + +FT ILL +++YNL P +Y LL
Sbjct: 566 FKLFYRPVSATSFTGPILLPGTVSSYNLSQLDPSTVYEVKLL 607
>sp|Q57007|Y1107_HAEIN Hypothetical Na(+)/H(+) antiporter HI1107
Length = 468
Score = 28.1 bits (61), Expect = 8.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -1
Query: 400 LSRLPWTFLCWCGRIRLLPFFAS 332
LS LPW LCW G I + + AS
Sbjct: 437 LSYLPWAILCWSGIIFAIIYGAS 459
>sp|P07706|NU5M_DROYA NADH-ubiquinone oxidoreductase chain 5 (NADH dehydrogenase
subunit 5)
Length = 573
Score = 28.1 bits (61), Expect = 8.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Frame = +2
Query: 11 CVLDFLNLVKLKMSCLIYSILY*MN 85
C + F+NL+ + ++C + S+ Y +N
Sbjct: 2 CSISFINLISISLTCFLLSLYYLLN 26
>sp|Q57593|Y129_METJA Hypothetical protein MJ0129
Length = 170
Score = 28.1 bits (61), Expect = 8.8
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -3
Query: 296 VILQI*FFYINKLIITIYRILSQGIYTVFIFCFGLVVLL 180
+IL I FYI +++ GI TVF+F +GL++ L
Sbjct: 41 IILSIIVFYIFYPQNISLFLITAGILTVFVFLYGLLLFL 79
>sp|Q9VS60|SMSR1_DROME Sphingomyelin synthase-related 1
Length = 600
Score = 28.1 bits (61), Expect = 8.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -2
Query: 306 IFSGNFTNLILLY*QINNYNLPNSFPRNIYRFHLLFWVSSSF 181
+FSG+ L LL N+ + PRN+Y H L W+ + F
Sbjct: 354 MFSGHTVALTLL-----NFFITEYTPRNLYFLHTLTWLLNMF 390
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,343,975
Number of Sequences: 369166
Number of extensions: 649534
Number of successful extensions: 1384
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2294548080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)