Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N09
(843 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-... 237 3e-62
sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-... 236 6e-62
sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-... 234 3e-61
sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-... 233 4e-61
sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-... 230 4e-60
sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-... 230 4e-60
sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-... 230 4e-60
sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-... 229 7e-60
sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-... 229 9e-60
sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-... 229 9e-60
>sp|Q69BJ7|UCRI_SAISC Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 237 bits (604), Expect = 3e-62
Identities = 119/237 (50%), Positives = 153/237 (64%), Gaps = 1/237 (0%)
Frame = +1
Query: 82 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 258
E +LD + +L + P SV LN P VR HT+ KVP+F +YRR E+
Sbjct: 39 EPPVLDPKRPILSRESLSGQAARRPLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVL 97
Query: 259 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 438
T R + R+ SY + +VT +SSM +A L+ + IE+ LS
Sbjct: 98 DKTKSSRESSDARKVFSYMVTATTAVGVTYAAKSIVTQFISSMSASADVLAMSKIEIKLS 157
Query: 439 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 618
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVC 217
Query: 619 THLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
THLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F++D VVVG
Sbjct: 218 THLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFLSDDMVVVG 274
>sp|P13272|UCRI_BOVIN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP) [Contains:
Ubiquinol-cytochrome c reductase 8 kDa protein (Complex
III subunit IX)]
Length = 274
Score = 236 bits (602), Expect = 6e-62
Identities = 120/237 (50%), Positives = 157/237 (66%), Gaps = 1/237 (0%)
Frame = +1
Query: 82 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 258
E +LD +S+L + + P SVSLN P VR HT+ KVP+F +YRR E+
Sbjct: 39 ESPVLDLKRSVLCRESLRGQAAGRPLVASVSLNVPASVRYSHTDI-KVPDFSDYRRPEVL 97
Query: 259 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 438
ST + + R+ SY +++V+ +SSM +A L+ + IE+ LS
Sbjct: 98 DSTKSSKESSEARKGFSYLVTATTTVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLS 157
Query: 439 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 618
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D ERV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVC 217
Query: 619 THLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
THLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +D V+VG
Sbjct: 218 THLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPSYEFTSDDMVIVG 274
>sp|Q69BJ8|UCRI_LAGLA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 234 bits (596), Expect = 3e-61
Identities = 118/237 (49%), Positives = 151/237 (63%), Gaps = 1/237 (0%)
Frame = +1
Query: 82 EKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELK 258
E +LD + +L + P SV LN P VR HT+ KVP+F +YRR E+
Sbjct: 39 EPPVLDPKRPILSRESLSGQAARRPLVASVGLNVPASVRYSHTDI-KVPDFSDYRRSEVL 97
Query: 259 PSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLS 438
T R + R+ SY + +VT +SSM +A L+ + IE+ LS
Sbjct: 98 DKTKSSRESSDARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLS 157
Query: 439 SIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGIC 618
IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+C
Sbjct: 158 DIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVC 217
Query: 619 THLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
THLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F D V+VG
Sbjct: 218 THLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTGDDMVIVG 274
>sp|Q69BJ9|UCRI_AOTAZ Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 233 bits (595), Expect = 4e-61
Identities = 120/239 (50%), Positives = 156/239 (65%), Gaps = 1/239 (0%)
Frame = +1
Query: 76 PKEKIILDNSQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREE 252
PK I+ S+ L G+ +R P +V LN P VR HT+ KVP+F +YRR E
Sbjct: 45 PKRPIL---SRESLSGQAARR-----PLVATVGLNVPASVRYSHTDI-KVPDFSDYRRSE 95
Query: 253 LKPSTTIDRNTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVD 432
+ +T R + R+ SY + +VT +SSM +A L+ + IE+
Sbjct: 96 VLDTTKSSRESSDARKGFSYLVTATTAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIK 155
Query: 433 LSSIPEGKSVVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIG 612
LS IPEGK++ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG
Sbjct: 156 LSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIG 215
Query: 613 ICTHLGCVPISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
+CTHLGCVPI+NAG++ GYYCPCHGSHYD SGRIRKGPAP NLEVP Y+F +D V+VG
Sbjct: 216 VCTHLGCVPIANAGDFGGYYCPCHGSHYDASGRIRKGPAPLNLEVPTYEFTSDDLVIVG 274
>sp|Q9CR68|UCRI_MOUSE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 230 bits (586), Expect = 4e-60
Identities = 113/213 (53%), Positives = 146/213 (68%), Gaps = 1/213 (0%)
Frame = +1
Query: 154 PSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDRNTDVERRFPSYXXXXXX 330
P +V LN P VR HT+ KVP+F +YRR E+ ST + + R+ SY
Sbjct: 63 PLVATVGLNVPASVRFSHTDV-KVPDFSDYRRAEVLDSTKSSKESSEARKGFSYLVTATT 121
Query: 331 XXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKSVVMKWRNKPLFVRHRTA 510
+++V+ +SSM +A L+ + IE+ LS IPEGK++ KWR KPLFVRHRT
Sbjct: 122 TVGVAYAAKNVVSQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTK 181
Query: 511 EDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVPISNAGEYNGYYCPCHGS 690
++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVPI+NAG++ GYYCPCHGS
Sbjct: 182 KEIDQEAAVEVSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDFGGYYCPCHGS 241
Query: 691 HYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
HYD SGRIRKGPAP NLEVP Y+F +D VVVG
Sbjct: 242 HYDASGRIRKGPAPLNLEVPAYEFTSDDVVVVG 274
>sp|Q69BK0|UCRI_COLPO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 230 bits (586), Expect = 4e-60
Identities = 120/230 (52%), Positives = 150/230 (65%), Gaps = 1/230 (0%)
Frame = +1
Query: 103 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 279
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFCDYRRPEVLDSTKSSR 104
Query: 280 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 459
+ R+ SY ++ VT +SSM +A L+ A IEV LS IPEGK+
Sbjct: 105 ESSEARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKN 164
Query: 460 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 639
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 640 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D VVVG
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVVVG 274
>sp|Q69BK1|UCRI_CERAE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 230 bits (586), Expect = 4e-60
Identities = 119/230 (51%), Positives = 150/230 (65%), Gaps = 1/230 (0%)
Frame = +1
Query: 103 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 279
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSR 104
Query: 280 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 459
+ R+ SY +++VT +SSM +A L+ A IE++LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKN 164
Query: 460 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 639
+ KWR KPLFVRHRT ++I E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 640 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F D VVVG
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPPYEFTGDDVVVVG 274
>sp|Q69BK4|UCRI_GORGO Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|P47985|UCRI_HUMAN Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 229 bits (584), Expect = 7e-60
Identities = 119/230 (51%), Positives = 150/230 (65%), Gaps = 1/230 (0%)
Frame = +1
Query: 103 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 279
S+ L G+ +R P SV LN P V HT+ KVP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDI-KVPDFSEYRRLEVLDSTKSSR 104
Query: 280 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 459
+ R+ SY ++ VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 460 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 639
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 640 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D V+VG
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
>sp|Q69BK2|UCRI_THEGE Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 229 bits (583), Expect = 9e-60
Identities = 120/230 (52%), Positives = 151/230 (65%), Gaps = 1/230 (0%)
Frame = +1
Query: 103 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 279
S+ L G+ +R P SV LN P V HT+ KVP+F +YRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFYDYRRLEVLDSTKSSR 104
Query: 280 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 459
+ R+ SY ++ VT +SSM +A L+ A IE++LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKN 164
Query: 460 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 639
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIGICTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVP 224
Query: 640 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D VVVG
Sbjct: 225 IANAGDFGGYYCPCHGSHYDVSGRIRLGPAPLNLEVPPYEFTSDDMVVVG 274
>sp|Q69BK5|UCRI_PANTR Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
sp|Q69BK6|UCRI_PANPA Ubiquinol-cytochrome c reductase iron-sulfur subunit, mitochondrial
precursor (Rieske iron-sulfur protein) (RISP)
Length = 274
Score = 229 bits (583), Expect = 9e-60
Identities = 119/230 (51%), Positives = 150/230 (65%), Gaps = 1/230 (0%)
Frame = +1
Query: 103 SQSLLHGKLFKRNFKLWPSSVSVSLNGPMQVRLIHTEFCKVPEF-EYRREELKPSTTIDR 279
S+ L G+ +R P SV LN P V HT+ KVP+F EYRR E+ ST R
Sbjct: 51 SRESLSGQAVRR-----PLVASVGLNVPASVCYSHTDV-KVPDFSEYRRLEVLDSTKSSR 104
Query: 280 NTDVERRFPSYXXXXXXXXXXXXXXRDLVTAALSSMGPNAKTLSEASIEVDLSSIPEGKS 459
+ R+ SY ++ VT +SSM +A L+ A IE+ LS IPEGK+
Sbjct: 105 ESSEARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKN 164
Query: 460 VVMKWRNKPLFVRHRTAEDIAREGAVNKADLRHPEDDSERVQKPEWLILIGICTHLGCVP 639
+ KWR KPLFVRHRT ++I +E AV + LR P+ D +RV+KPEW+ILIG+CTHLGCVP
Sbjct: 165 MAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVP 224
Query: 640 ISNAGEYNGYYCPCHGSHYDGSGRIRKGPAPFNLEVPDYKFINDKTVVVG 789
I+NAG++ GYYCPCHGSHYD SGRIR GPAP NLEVP Y+F +D V+VG
Sbjct: 225 IANAGDFGGYYCPCHGSHYDASGRIRLGPAPLNLEVPTYEFTSDDMVIVG 274
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 97,743,955
Number of Sequences: 369166
Number of extensions: 2035554
Number of successful extensions: 5180
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4974
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5123
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8245425915
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)