Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N06
(994 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9BRP0|OVOL2_HUMAN Transcription factor Ovo-like 2 (hOvo... 44 7e-04
sp|P51521|OVO_DROME Ovo protein (Shaven baby protein) 42 0.002
sp|Q8CIV7|OVOL2_MOUSE Transcription factor Ovo-like 2 (mOvo... 42 0.004
sp|Q9NQV6|PRD10_HUMAN PR-domain zinc finger protein 10 40 0.008
sp|Q9HC78|ZBT20_HUMAN Zinc finger and BTB domain containing... 40 0.010
sp|Q9VH70|TOPI_DROME Testis-specific zinc finger protein to... 39 0.017
sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane ... 39 0.017
sp|Q01611|ZFY1_XENLA Zinc finger Y-chromosomal protein 1 (Z... 38 0.039
sp|Q9N658|GFI1_DROME Zinc finger protein sens (Senseless pr... 38 0.051
sp|P57071|PRD15_HUMAN PR-domain zinc finger protein 15 (Zin... 38 0.051
>sp|Q9BRP0|OVOL2_HUMAN Transcription factor Ovo-like 2 (hOvo2) (Zinc finger protein 339)
Length = 275
Score = 43.9 bits (102), Expect = 7e-04
Identities = 38/146 (26%), Positives = 59/146 (40%), Gaps = 5/146 (3%)
Frame = +3
Query: 30 NGEQEDSALSSGNTELAKSIFSDLKFECGFCKETAIHS-----NFFSTRIMLNDHLKACH 194
+ E D L++ +A+S +KF G C ++ +HS F + MLN HLK CH
Sbjct: 86 DAEGPDGHLATKQRPVARS---KIKFTTGTCSDSVVHSCDLCGKGFRLQRMLNRHLK-CH 141
Query: 195 GITGDSQITNDFLCYICGLKFDSRDKWEDHTLAEHSKGFRKIGLSLINPSAVVLDTTCTS 374
+Q+ LC CG F+ + H V T
Sbjct: 142 -----NQVKRH-LCTFCGKGFNDTFDLKRH---------------------VRTHTGIRP 174
Query: 375 YRCYLCNHRFDKKISCANHMKTKHSI 452
Y+C +CN F ++ S +H+K H +
Sbjct: 175 YKCNVCNKAFTQRCSLESHLKKIHGV 200
>sp|P51521|OVO_DROME Ovo protein (Shaven baby protein)
Length = 1351
Score = 42.4 bits (98), Expect = 0.002
Identities = 41/143 (28%), Positives = 54/143 (37%)
Frame = +3
Query: 24 SDNGEQEDSALSSGNTELAKSIFSDLKFECGFCKETAIHSNFFSTRIMLNDHLKACHGIT 203
S G EDS SSGN KF C C +T FS + +LN H+K CH
Sbjct: 1182 SSGGANEDS--SSGNN----------KFVCRVCMKT------FSLQRLLNRHMK-CH--- 1219
Query: 204 GDSQITNDFLCYICGLKFDSRDKWEDHTLAEHSKGFRKIGLSLINPSAVVLDTTCTSYRC 383
S I +LC CG F+ + HT T Y+C
Sbjct: 1220 --SDIKR-YLCTFCGKGFNDTFDLKRHTRTH---------------------TGVRPYKC 1255
Query: 384 YLCNHRFDKKISCANHMKTKHSI 452
LC F ++ S +H + HS+
Sbjct: 1256 NLCEKSFTQRCSLESHCQKVHSV 1278
>sp|Q8CIV7|OVOL2_MOUSE Transcription factor Ovo-like 2 (mOvo2) (Zinc finger protein 339)
(Zinc finger OVO2) (Zinc finger protein mOVO)
Length = 274
Score = 41.6 bits (96), Expect = 0.004
Identities = 34/125 (27%), Positives = 49/125 (39%), Gaps = 5/125 (4%)
Frame = +3
Query: 93 SDLKFECGFCKETAIHS-----NFFSTRIMLNDHLKACHGITGDSQITNDFLCYICGLKF 257
S +KF G C + IH+ F + MLN HLK CH +Q+ LC CG F
Sbjct: 103 SKIKFTTGTCDNSVIHNCDLCGKSFRLQRMLNRHLK-CH-----NQVKRH-LCTFCGKGF 155
Query: 258 DSRDKWEDHTLAEHSKGFRKIGLSLINPSAVVLDTTCTSYRCYLCNHRFDKKISCANHMK 437
+ + H V T Y+C +CN F ++ S +H+K
Sbjct: 156 NDTFDLKRH---------------------VRTHTGIRPYKCEVCNKAFTQRCSLESHLK 194
Query: 438 TKHSI 452
H +
Sbjct: 195 KIHGV 199
>sp|Q9NQV6|PRD10_HUMAN PR-domain zinc finger protein 10
Length = 1061
Score = 40.4 bits (93), Expect = 0.008
Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 6/80 (7%)
Frame = +3
Query: 225 DFLCYICGLKFDSRDKWEDHTLAEHS------KGFRKIGLSLINPSAVVLDTTCTSYRCY 386
DFLC CG +F +DK +H H+ K R P D +++C
Sbjct: 585 DFLCSTCGKQFKRKDKLREHMQRMHNPEREAKKADRISRSKTFKPRITSTDYDSFTFKCR 644
Query: 387 LCNHRFDKKISCANHMKTKH 446
LC F ++ NH+ +H
Sbjct: 645 LCMMGFRRRGMLVNHLSKRH 664
Score = 32.7 bits (73), Expect = 1.6
Identities = 54/257 (21%), Positives = 91/257 (35%), Gaps = 34/257 (13%)
Frame = +3
Query: 228 FLCYICGLKFDSRDKWEDHTLAEHSKGFRKIGLSLIN---------PSAVVLDTTCTSYR 380
F C CG F +DK + H +G + L N S + L + +Y
Sbjct: 444 FKCLQCGKAFREKDKLDQHLRFHGREGNCPLTCDLCNKGFISSTSLESHMKLHSDQKTYS 503
Query: 381 CYLCNHRFDKKISCANHMKTKHSIDDGELNWGMLTDASVISDTNKRAKQSINSSKMCLST 560
C C FD+ +H+ I+DG K+ +S +S K+ T
Sbjct: 504 CIFCPESFDRLDLLKDHVAI--HINDGYFTCPTCKKRFPDFIQVKKHVRSFHSEKIYQCT 561
Query: 561 YPSK------RLKVXXXXXXXXXLFICGICPFQCNIRKEMIDHAISFH-----SKSSDK- 704
K +L++ F+C C Q + ++ +H H +K +D+
Sbjct: 562 ECDKAFCRPDKLRLHMLRHSDRKDFLCSTCGKQFKRKDKLREHMQRMHNPEREAKKADRI 621
Query: 705 -----------SLDNPSY-FVCPDCALSFISNKSRAIHLKLIHKIPNPAVFMDSILDS*I 848
S D S+ F C C + F HL H P + ++ + + +
Sbjct: 622 SRSKTFKPRITSTDYDSFTFKCRLCMMGFRRRGMLVNHLSKRH----PDMKIEEVPELTL 677
Query: 849 -LVLFNSVYFCKLIKYC 896
++ N YFC +YC
Sbjct: 678 PIIKPNRDYFC---QYC 691
>sp|Q9HC78|ZBT20_HUMAN Zinc finger and BTB domain containing protein 20 (Zinc finger
protein 288) (Dendritic-derived BTB/POZ zinc finger
protein)
Length = 741
Score = 40.0 bits (92), Expect = 0.010
Identities = 31/115 (26%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = +3
Query: 105 FECGFCKETAIHSNFFSTRIMLNDHLKACHGITGDSQITNDFLCYICGLKFDSRDKWEDH 284
++C C + F+ + LN H++ G + CYIC KF + E H
Sbjct: 634 YQCSICNKR------FTQKSSLNVHMRLHRG-------EKSYECYICKKKFSHKTLLERH 680
Query: 285 T-LAEHSKGFRKIGL---SLINPSAVVLDTTCTSYRCYLCNHRFDKKISCANHMK 437
L S G G + P VV T T+Y C +C +FD+ +HM+
Sbjct: 681 VALHSASNGTPPAGTPPGARAGPPGVVACTEGTTYVCSVCPAKFDQIEQFNDHMR 735
Score = 30.8 bits (68), Expect = 6.2
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 7/75 (9%)
Frame = +3
Query: 234 CYICGLKFDSRDKWEDHTLAEHSKG-------FRKIGLSLINPSAVVLDTTCTSYRCYLC 392
C +C F ++ + H + +R L +V T +Y+C +C
Sbjct: 580 CTLCNKTFTAKQNYVKHMFVHTGEKPHQCSICWRSFSLKDYLIKHMVTHTGVRAYQCSIC 639
Query: 393 NHRFDKKISCANHMK 437
N RF +K S HM+
Sbjct: 640 NKRFTQKSSLNVHMR 654
>sp|Q9VH70|TOPI_DROME Testis-specific zinc finger protein topi (Protein matotopetli)
Length = 814
Score = 39.3 bits (90), Expect = 0.017
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Frame = +3
Query: 150 FSTRIMLNDHLKACHGITGDSQITNDFLCYICGLKFDSRDKWEDHTL---AEHSKGFRKI 320
F+ R LNDH++ CH TG+ +LC +CG +F + + H L E +
Sbjct: 550 FTIRPDLNDHIRKCH--TGE----RPYLCLVCGKRFLTGSVFYQHRLIHRGERRYECEEC 603
Query: 321 GLSLINPSAVV----LDTTCTSYRCYLCNHRFDKKISCANHMKTKHS 449
G A+ + T Y C C F ++ H++ +HS
Sbjct: 604 GKRFYRADALKNHQRIHTGEKPYSCLFCTKTFRQRGDRDKHIRARHS 650
>sp|Q923X1|ELTD1_MOUSE EGF, latrophilin seven transmembrane domain containing protein 1
precursor
Length = 739
Score = 39.3 bits (90), Expect = 0.017
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +3
Query: 39 QEDSALSSGNTELAKSIFSDLKFECGFCKETAIHSNFFSTRIMLNDHLKACHGITGDSQI 218
Q++S +T+LA +F+ F+ K H N + ++ KA HG TG+ +
Sbjct: 290 QKNSQFDMNSTDLALKVFA---FDSTHMKHAHPHMNVDGGYVKISPRRKAAHGTTGNVVV 346
Query: 219 TNDFLCY-ICGLKFDSRDKWEDHTLAEHSKGFRKIGLSLINPS 344
FLCY G S D + T ++S+G K+ S+I+ S
Sbjct: 347 A--FLCYKSIGPLLSSSDNFLLDTQNDNSEGKEKVISSVISAS 387
>sp|Q01611|ZFY1_XENLA Zinc finger Y-chromosomal protein 1 (ZFY-1)
Length = 794
Score = 38.1 bits (87), Expect = 0.039
Identities = 34/133 (25%), Positives = 51/133 (38%), Gaps = 9/133 (6%)
Frame = +3
Query: 78 AKSIFSDLKFECGFCKETAIHSNFFSTRIMLNDHLKACHGITGDSQITNDF-LCYICGLK 254
A I ++ EC C + +H+N H +T + + N +C C +
Sbjct: 468 ATVIKTEKDLECEECGKIFLHANALFA-----------HKLTHNEKAGNKMHICKFCDYE 516
Query: 255 FDSRDKWEDHTLAEHSKGFRKI----GLSLINPSAVV----LDTTCTSYRCYLCNHRFDK 410
+ H LA HSK F I G +PS + T Y C C++R
Sbjct: 517 TAEQGLLNRHLLAVHSKSFPHICVECGKGFRHPSELKKHMRTHTGEKPYLCQYCDYRSAD 576
Query: 411 KISCANHMKTKHS 449
+ H+KTKHS
Sbjct: 577 SSNLKTHVKTKHS 589
Score = 34.3 bits (77), Expect = 0.56
Identities = 38/174 (21%), Positives = 62/174 (35%)
Frame = +3
Query: 234 CYICGLKFDSRDKWEDHTLAEHSKGFRKIGLSLINPSAVVLDTTCTSYRCYLCNHRFDKK 413
C ICG KF SR + H RK YRC C++ +KK
Sbjct: 413 CMICGKKFKSRGFLKRHMKNHPEHLVRK------------------KYRCTDCDYTTNKK 454
Query: 414 ISCANHMKTKHSIDDGELNWGMLTDASVISDTNKRAKQSINSSKMCLSTYPSKRLKVXXX 593
+S NH+++ H + A+VI ++ + K+ L K+
Sbjct: 455 VSLHNHLES-HKL-----------TATVIK--TEKDLECEECGKIFLHANALFAHKLTHN 500
Query: 594 XXXXXXLFICGICPFQCNIRKEMIDHAISFHSKSSDKSLDNPSYFVCPDCALSF 755
+ IC C ++ + + H ++ HSKS +C +C F
Sbjct: 501 EKAGNKMHICKFCDYETAEQGLLNRHLLAVHSKSFP--------HICVECGKGF 546
>sp|Q9N658|GFI1_DROME Zinc finger protein sens (Senseless protein)
Length = 541
Score = 37.7 bits (86), Expect = 0.051
Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 7/125 (5%)
Frame = +3
Query: 93 SDLKFECGFCKETAIHSNFFSTRIMLNDHLKACHGITGDSQITNDFLCYICGLKFDSRDK 272
S F+C C ++ S+ ST ++++ T + C CG +F +
Sbjct: 409 SGRNFQCKQCGKSFKRSSTLSTHLLIHSD-------------TRPYPCQYCGKRFHQKSD 455
Query: 273 WEDHTLAEHSKGFRK--IGLSLINPSAVVL-----DTTCTSYRCYLCNHRFDKKISCANH 431
+ HT + K + L + S+ ++ T + C+LC+ F +K+ H
Sbjct: 456 MKKHTYIHTGEKPHKCTVCLKAFSQSSNLITHMRKHTGYKPFGCHLCDQSFQRKVDLRRH 515
Query: 432 MKTKH 446
+++H
Sbjct: 516 RESRH 520
>sp|P57071|PRD15_HUMAN PR-domain zinc finger protein 15 (Zinc finger protein 298)
Length = 1507
Score = 37.7 bits (86), Expect = 0.051
Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 9/124 (7%)
Frame = +3
Query: 102 KFECGFCKETAIHSNFFSTRIMLNDHLKACHGITGDSQITNDFLCYICGLKFDSRDKWED 281
++EC C F+ ++ + H K GI DF+C +CG F R+ E
Sbjct: 1139 EYECKECHRR------FAQKVNMLKHCKRHTGI-------KDFMCELCGKTFSERNTMET 1185
Query: 282 HTLAEHSKG---------FRKIGLSLINPSAVVLDTTCTSYRCYLCNHRFDKKISCANHM 434
H L H+ G + + ++ + + C LC + + S + HM
Sbjct: 1186 HKLI-HTVGKQWTCSVCDKKYVTEYMLQKHVQLTHDKVEAQSCQLCGTKVSTRASMSRHM 1244
Query: 435 KTKH 446
+ KH
Sbjct: 1245 RRKH 1248
Score = 33.9 bits (76), Expect = 0.73
Identities = 32/135 (23%), Positives = 51/135 (37%), Gaps = 1/135 (0%)
Frame = +3
Query: 57 SSGNTELAKSIFSDLKFE-CGFCKETAIHSNFFSTRIMLNDHLKACHGITGDSQITNDFL 233
S GN E K I + +K C C ++ F+ + ML +H++ + ++L
Sbjct: 1067 SIGNLERHKLIHTGVKSHACEQCGKS------FARKDMLKEHMRVHDNV-------REYL 1113
Query: 234 CYICGLKFDSRDKWEDHTLAEHSKGFRKIGLSLINPSAVVLDTTCTSYRCYLCNHRFDKK 413
C CG ++ H L H K + I Y C C+ RF +K
Sbjct: 1114 CAECGKGMKTK-----HALRHHMKLHKGI----------------KEYECKECHRRFAQK 1152
Query: 414 ISCANHMKTKHSIDD 458
++ H K I D
Sbjct: 1153 VNMLKHCKRHTGIKD 1167
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 109,339,935
Number of Sequences: 369166
Number of extensions: 2121342
Number of successful extensions: 5959
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5848
length of database: 68,354,980
effective HSP length: 111
effective length of database: 47,849,395
effective search space used: 10479017505
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)