Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_N04
(857 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P23381|SYW_HUMAN Tryptophanyl-tRNA synthetase (Tryptopha... 378 e-104
sp|P32921|SYW_MOUSE Tryptophanyl-tRNA synthetase (Tryptopha... 375 e-103
sp|P23612|SYW_RABIT Tryptophanyl-tRNA synthetase (Tryptopha... 373 e-103
sp|Q5R4J1|SYW_PONPY Tryptophanyl-tRNA synthetase (Tryptopha... 371 e-102
sp|P17248|SYW_BOVIN Tryptophanyl-tRNA synthetase (Tryptopha... 363 e-100
sp|Q09692|SYW_SCHPO Putative tryptophanyl-tRNA synthetase (... 333 3e-91
sp|Q12109|SYWC_YEAST Tryptophanyl-tRNA synthetase, cytoplas... 333 5e-91
sp|Q8U453|SYW_PYRFU Tryptophanyl-tRNA synthetase (Tryptopha... 239 7e-63
sp|Q5JEP3|SYW_PYRKO Tryptophanyl-tRNA synthetase (Tryptopha... 234 3e-61
sp|O59584|SYW_PYRHO Tryptophanyl-tRNA synthetase (Tryptopha... 234 3e-61
>sp|P23381|SYW_HUMAN Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
(IFP53) (hWRS)
Length = 471
Score = 378 bits (971), Expect = e-104
Identities = 170/282 (60%), Positives = 227/282 (80%)
Frame = +2
Query: 5 GIDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKF 184
GIDYDKL+ ++GS KI+++LI++ E TG++ HH LRRG+F+SHR+ N++LD+Y+ + F
Sbjct: 97 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHHFLRRGIFFSHRDMNQVLDAYENKKPF 156
Query: 185 FLYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRNISVEQVTRMAI 364
+LYTGRGPSS+A+H+GHL PFIFTKWLQD+F+VPL+IQ+TDDEK L ++++++Q A+
Sbjct: 157 YLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAV 216
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN KDIIA GFD+NKTFIF D Y+G S FYK ++I V FN +K IFGF++ D +
Sbjct: 217 ENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIG 276
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
K++FP +QAA SFS+SFP IF + I+ LIPCAIDQDPYFRMTRDVAPR+ PKPAL+
Sbjct: 277 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLH 336
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
S FFP+LQG QTKM+ASDP S+IF+TDT++QI K+N H F+
Sbjct: 337 STFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 378
>sp|P32921|SYW_MOUSE Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 481
Score = 375 bits (962), Expect = e-103
Identities = 170/282 (60%), Positives = 226/282 (80%)
Frame = +2
Query: 5 GIDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKF 184
GIDYDKL+ ++GS KI+++LI++ E TG++ H LRRG+F+SHR+ N+ILD+Y+ + F
Sbjct: 101 GIDYDKLIVQFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQILDAYENKKPF 160
Query: 185 FLYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRNISVEQVTRMAI 364
+LYTGRGPSS+A+HLGHL PFIFTKWLQD+F+VPL+IQ++DDEK L +++++EQ +
Sbjct: 161 YLYTGRGPSSEAMHLGHLVPFIFTKWLQDVFNVPLVIQMSDDEKYLWKDLTLEQAYSYTV 220
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN KDIIA GFD+NKTFIF D +Y+GQ FY+ ++I V FN +K IFGF++ D +
Sbjct: 221 ENAKDIIACGFDINKTFIFSDLEYMGQSPGFYRNVVKIQKHVTFNQVKGIFGFTDSDCIG 280
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
K++FP VQAA SFS+SFP IF + I+ LIPCAIDQDPYFRMTRDVAPR+ PKPAL+
Sbjct: 281 KISFPAVQAAPSFSNSFPKIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGHPKPALLH 340
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
S FFP+LQG QTKM+ASDP S+IF+TDT++QI K+N H F+
Sbjct: 341 STFFPALQGAQTKMSASDPNSSIFLTDTAKQIKSKVNKHAFS 382
>sp|P23612|SYW_RABIT Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 475
Score = 373 bits (957), Expect = e-103
Identities = 168/282 (59%), Positives = 224/282 (79%)
Frame = +2
Query: 5 GIDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKF 184
GIDYDKL+ ++GS KI+++L+++ E TG++ H LRRG+F+SHR+ N++LD+Y+ + F
Sbjct: 101 GIDYDKLIVQFGSSKIDKELVNRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPF 160
Query: 185 FLYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRNISVEQVTRMAI 364
+LYTGRGPSS+A+H+GHL PFIFTKWLQD+FDVPL++Q++DDEK L +++++EQV +
Sbjct: 161 YLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFDVPLVVQMSDDEKYLWKDLTLEQVYGYTL 220
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN KDIIA GFDVNKTFIF D Y+G FYK ++I V FN +K IFGF++ D +
Sbjct: 221 ENAKDIIACGFDVNKTFIFSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIG 280
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
K++FP +QAA SFS+SFP IF I+ LIPCAIDQDPYFRMTRDVAPR+ PKPAL+
Sbjct: 281 KISFPAIQAAPSFSNSFPQIFHGQADIQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLH 340
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
S FFP+LQG QTKM+ASDP S+IF+TDT++QI K+N H F+
Sbjct: 341 STFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 382
>sp|Q5R4J1|SYW_PONPY Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 472
Score = 371 bits (953), Expect = e-102
Identities = 168/282 (59%), Positives = 225/282 (79%)
Frame = +2
Query: 5 GIDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKF 184
GIDYDKL+ ++GS KI+++LI++ E TG++ H LRRG+F+SHR+ N++LD+Y+ + F
Sbjct: 98 GIDYDKLIVRFGSSKIDKELINRIERATGQRPHRFLRRGIFFSHRDMNQVLDAYENKKPF 157
Query: 185 FLYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRNISVEQVTRMAI 364
+LYTGRGPSS+A+H+GHL PFIFTKWLQD+F+VPL+IQ+TDDEK L ++++++Q A+
Sbjct: 158 YLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYSYAV 217
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN KDIIA GFD+NKTFIF D Y+G S FYK ++I V FN +K IFGF++ D +
Sbjct: 218 ENAKDIIACGFDINKTFIFSDLDYMGMSSGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIG 277
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
K++FP +QAA SFS+SFP IF + I+ LIPCAIDQDPYFRMTRDVAPR+ PK AL+
Sbjct: 278 KISFPAIQAAPSFSNSFPQIFRDRTDIQCLIPCAIDQDPYFRMTRDVAPRIGYPKLALLH 337
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
S FFP+LQG QTKM+ASDP S+IF+TDT++QI K+N H F+
Sbjct: 338 STFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 379
>sp|P17248|SYW_BOVIN Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 475
Score = 363 bits (931), Expect = e-100
Identities = 164/282 (58%), Positives = 223/282 (79%)
Frame = +2
Query: 5 GIDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKF 184
GIDYDKL+ ++GS KI+++L+++ E TG++ H LRRG+F+SHR+ ++ILD+Y+ + F
Sbjct: 102 GIDYDKLIVRFGSSKIDKELVNRIERATGQRPHRFLRRGIFFSHRDMHQILDAYENKKPF 161
Query: 185 FLYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRNISVEQVTRMAI 364
+LYTGRGPSS+A+H+GHL PFIFTKWLQD+F+VPL+IQ+TDDEK L ++++++Q A+
Sbjct: 162 YLYTGRGPSSEAMHVGHLIPFIFTKWLQDVFNVPLVIQMTDDEKYLWKDLTLDQAYGYAV 221
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN KDI GFD+NKTFIF D Y+G FYK ++I V FN +K IFGF++ D +
Sbjct: 222 ENAKDITC-GFDINKTFIFSDLDYMGMSPGFYKNVVKIQKHVTFNQVKGIFGFTDSDCIG 280
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
K++FP +QAA SFS+SFP IF + ++ LIPCAIDQDPYFRMTRDVAPR+ PKPAL+
Sbjct: 281 KISFPAIQAAPSFSNSFPQIFRDRTDVQCLIPCAIDQDPYFRMTRDVAPRIGYPKPALLH 340
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
S FFP+LQG QTKM+ASDP S+IF+TDT++QI K+N H F+
Sbjct: 341 STFFPALQGAQTKMSASDPNSSIFLTDTAKQIKTKVNKHAFS 382
>sp|Q09692|SYW_SCHPO Putative tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase)
(TrpRS)
Length = 395
Score = 333 bits (855), Expect = 3e-91
Identities = 163/283 (57%), Positives = 212/283 (74%), Gaps = 1/283 (0%)
Frame = +2
Query: 5 GIDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKF 184
GIDY++L+ ++G+ KI + +++FE++TG+K H LLRRG F+SHR+F+ ILD Y++ + F
Sbjct: 24 GIDYERLIVQFGTRKITPEQLERFEKLTGKKPHLLLRRGAFFSHRDFDMILDRYEQKKPF 83
Query: 185 FLYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRN-ISVEQVTRMA 361
+LYTGRGPSSD++HLGH+ PF+F KWLQD+F VPL+IQLTDDEK L + +S+E R A
Sbjct: 84 YLYTGRGPSSDSMHLGHMIPFMFCKWLQDVFQVPLVIQLTDDEKFLFKQGVSLEDCQRFA 143
Query: 362 IENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSV 541
EN KDIIAVGFD KTFIF + Y+G AFY+ +RI + N KA FGF++ DS+
Sbjct: 144 RENAKDIIAVGFDPKKTFIFMNSTYVG--GAFYQNVVRIAKCITANQSKACFGFTDSDSI 201
Query: 542 EKLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALI 721
K+ F +QAA SFSSSFP IF I LIPCAIDQDPYFR+TRDV+ RL KPAL+
Sbjct: 202 GKIHFASIQAAPSFSSSFPHIFNGAKDIPCLIPCAIDQDPYFRLTRDVSGRLKFKKPALL 261
Query: 722 LSRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
SRFFP+LQG Q+KM+AS SAIF+TDT +I +KIN H F+
Sbjct: 262 HSRFFPALQGPQSKMSASKDSSAIFMTDTPNKIKNKINRHAFS 304
>sp|Q12109|SYWC_YEAST Tryptophanyl-tRNA synthetase, cytoplasmic (Tryptophan--tRNA ligase)
(TrpRS)
Length = 432
Score = 333 bits (853), Expect = 5e-91
Identities = 155/282 (54%), Positives = 215/282 (76%), Gaps = 1/282 (0%)
Frame = +2
Query: 8 IDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKFF 187
IDYDKL++++G+ + E+ + +F++VTGR+ HH LR+G+F+S R+F +ILD Y++G+ FF
Sbjct: 45 IDYDKLIKQFGTKPVNEETLKRFKQVTGREPHHFLRKGLFFSERDFTKILDLYEQGKPFF 104
Query: 188 LYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMRN-ISVEQVTRMAI 364
LYTGRGPSSD++HLGH+ PF+FTKWLQ++FDVPL+I+LTDDEK L ++ +++ V A
Sbjct: 105 LYTGRGPSSDSMHLGHMIPFVFTKWLQEVFDVPLVIELTDDEKFLFKHKLTINDVKNFAR 164
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN KDIIAVGFD TFIF D QY+G AFY+T +R+ ++ ++ KA+FGF++ D +
Sbjct: 165 ENAKDIIAVGFDPKNTFIFSDLQYMG--GAFYETVVRVSRQITGSTAKAVFGFNDSDCIG 222
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
K F +Q AT+F SSFP + G + LIPCAIDQDPYFR+ RDVA +L KPAL+
Sbjct: 223 KFHFASIQIATAFPSSFPNVLGLPDKTPCLIPCAIDQDPYFRVCRDVADKLKYSKPALLH 282
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
SRFFP+LQG+ TKM+ASD +AIF+TDT +QI KIN + F+
Sbjct: 283 SRFFPALQGSTTKMSASDDTTAIFMTDTPKQIQKKINKYAFS 324
>sp|Q8U453|SYW_PYRFU Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 385
Score = 239 bits (610), Expect = 7e-63
Identities = 123/276 (44%), Positives = 182/276 (65%), Gaps = 1/276 (0%)
Frame = +2
Query: 8 IDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKFF 187
IDY+KL+E++G+ + +DL+++ +T + RR F+SHR+++++LD Y++G+ FF
Sbjct: 16 IDYNKLIEQFGTSPLTDDLLERTARLTKSELPIFFRRKFFFSHRDYDKVLDDYEQGKGFF 75
Query: 188 LYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMR-NISVEQVTRMAI 364
LYTGRGPS +H+GH+ PF TKWLQ+ FDV L IQ+TDDEK L + N++ E A
Sbjct: 76 LYTGRGPSG-PMHIGHIIPFFATKWLQEKFDVNLYIQITDDEKFLFKENLTFEDTKYWAY 134
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
+N+ DIIAVGFD +KTFIF++ ++ + Y+ A+ I K+NF+ KA+FGF+E+ +
Sbjct: 135 QNILDIIAVGFDPDKTFIFQNSEF----TKIYEMAIPIAKKINFSMAKAVFGFTEQSKIG 190
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
+ FP +QAA +F + R LIP AIDQDPY+R+ RD A L K A +
Sbjct: 191 MIFFPAIQAAPTFF----------EKKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALH 240
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKI 832
S+FFP L G + KM+AS P +AI++TD E+ KI
Sbjct: 241 SKFFPPLTGLEGKMSASKPETAIYLTDNPEEAGKKI 276
>sp|Q5JEP3|SYW_PYRKO Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 384
Score = 234 bits (596), Expect = 3e-61
Identities = 122/276 (44%), Positives = 178/276 (64%), Gaps = 1/276 (0%)
Frame = +2
Query: 8 IDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKFF 187
+DY+KL+E++G+ + ++LI+K E+T + RR F+SHR+++++L Y+ G FF
Sbjct: 15 VDYNKLIEQFGTSPLTDELIEKTAELTKSELPLFFRRRFFFSHRDYDKVLADYESGRGFF 74
Query: 188 LYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMR-NISVEQVTRMAI 364
LYTGRGPS +H+GH+ PF TKWLQ+ FDV L IQ+TDDEK L + +S E R A
Sbjct: 75 LYTGRGPSG-PMHIGHIIPFFATKWLQENFDVNLYIQITDDEKFLFKEKLSFEDTKRWAY 133
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
EN+ DIIAVGFD +KTFIF++ ++ + Y+ AL I K+NF+ +A+FGF+E+ +
Sbjct: 134 ENILDIIAVGFDPDKTFIFQNSEF----TKIYEMALPIAKKINFSMARAVFGFNEQSKIG 189
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
+ +P +QAA +F + R LIP AIDQDPY+R+ RD A L K A I
Sbjct: 190 MIFYPAIQAAPTFF----------EKKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAAIH 239
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKI 832
S+F P L + KM+AS P +A+++TD E+ KI
Sbjct: 240 SKFVPGLTSLEGKMSASKPETAVYLTDDPEEAGKKI 275
>sp|O59584|SYW_PYRHO Tryptophanyl-tRNA synthetase (Tryptophan--tRNA ligase) (TrpRS)
Length = 386
Score = 234 bits (596), Expect = 3e-61
Identities = 123/282 (43%), Positives = 179/282 (63%), Gaps = 1/282 (0%)
Frame = +2
Query: 8 IDYDKLVEKYGSLKIEEDLIDKFEEVTGRKAHHLLRRGMFYSHREFNEILDSYKKGEKFF 187
+DYDKL++ +G+ + EDL++K E+T + RR F+SHR+++ IL Y++G FF
Sbjct: 16 VDYDKLIKHFGTSPLTEDLLEKTAELTKSELPIFFRRKFFFSHRDYDLILKDYEEGRGFF 75
Query: 188 LYTGRGPSSDALHLGHLTPFIFTKWLQDIFDVPLIIQLTDDEKCLMR-NISVEQVTRMAI 364
LYTGRGPS +H+GH+ PF TKWLQ+ F V L IQ+TDDEK L + N++ + R A
Sbjct: 76 LYTGRGPSG-PMHIGHIIPFFATKWLQEKFGVNLYIQITDDEKFLFKENLTFDDTKRWAY 134
Query: 365 ENVKDIIAVGFDVNKTFIFRDFQYIGQESAFYKTALRIGSKVNFNSMKAIFGFSEKDSVE 544
+N+ DIIAVGFD +KTFIF++ ++ + Y+ A+ I K+NF+ KA+FGF+E+ +
Sbjct: 135 DNILDIIAVGFDPDKTFIFQNSEF----TKIYEMAIPIAKKINFSMAKAVFGFTEQSKIG 190
Query: 545 KLAFPPVQAATSFSSSFPAIFGNNHQIRSLIPCAIDQDPYFRMTRDVAPRLNMPKPALIL 724
+ FP +Q A +F + R LIP AIDQDPY+R+ RD A L K A +
Sbjct: 191 MIFFPAIQIAPTFF----------ERKRCLIPAAIDQDPYWRLQRDFAESLGYYKTAALH 240
Query: 725 SRFFPSLQGNQTKMNASDPCSAIFITDTSEQIADKINNHTFT 850
S+F PSL KM+AS P +AI++TD+ E + K+ T T
Sbjct: 241 SKFVPSLTSLSGKMSASKPETAIYLTDSPEDVEKKVWKFTLT 282
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,249,839
Number of Sequences: 369166
Number of extensions: 2171260
Number of successful extensions: 6495
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6428
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)