Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_M16
(685 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kin... 129 5e-30
sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kin... 126 6e-29
sp|P20261|LIP1_CANRU Lipase 1 precursor 30 4.5
sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adeno... 30 5.9
sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small cha... 30 5.9
>sp|Q9UJ70|NAGK_HUMAN N-acetylglucosamine kinase (GlcNAc kinase)
Length = 344
Score = 129 bits (325), Expect = 5e-30
Identities = 70/215 (32%), Positives = 112/215 (52%), Gaps = 3/215 (1%)
Frame = +2
Query: 2 GTGSNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFK 181
GTGSNCRL++ D + GGWG+++GDEGSAY I + +K + D+ + K
Sbjct: 126 GTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGYVK 185
Query: 182 EILFKYLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARL 361
+ +F Y ++ D ++ Y +FDK A C +A+ A+ GD +F +AG +L R
Sbjct: 186 QAMFHYFQVPDRLGILTHLYRDFDKCRFAGFCRKIAEGAQQGDPLSRYIFRKAGEMLGRH 245
Query: 362 VATMARHCEPAILENPEGLPVVCVGGVWGSWNLLESGFIDGLKPKYE---NDIVIKKICL 532
+ + +P + + GLP++CVG VW SW LL+ GF+ L E + +
Sbjct: 246 IVAVLPEIDPVLFQGKIGLPILCVGSVWKSWELLKEGFLLALTQGREIQAQNFFSSFTLM 305
Query: 533 KRLIVTAAYGAAIIASELGHSPIKPDYSSTFCVFF 637
K +A GA++ A +GH + DYS+ F+
Sbjct: 306 KLRHSSALGGASLGARHIGHL-LPMDYSANAIAFY 339
>sp|Q9QZ08|NAGK_MOUSE N-acetylglucosamine kinase (GlcNAc kinase)
Length = 343
Score = 126 bits (316), Expect = 6e-29
Identities = 73/216 (33%), Positives = 111/216 (51%), Gaps = 4/216 (1%)
Frame = +2
Query: 2 GTGSNCRLVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIKKIIDAEEGRIPMETPYSVFK 181
GTGSNCRL++ D + GGWG+++GDEGSAY I + +K + D+ + K
Sbjct: 126 GTGSNCRLINPDGSESGCGGWGHMMGDEGSAYWIAHQAVKIVFDSIDNLEAAPHDIGHVK 185
Query: 182 EILFKYLKISDIYELIPLYYHNFDKALIANMCPLLAQAAENGDKFCIDLFYEAGYILARL 361
+ +F Y ++ D ++ Y +FDK A C +A+ A GD +F +AG +L R
Sbjct: 186 QAMFDYFQVPDRLGILTHLYRDFDKCKFAGFCQKIAEGAHQGDPLSRYIFRKAGEMLGRH 245
Query: 362 VATMARHCEPAILENPEGLPVVCVGGVWGSWNLLESGFIDGLKPKYENDI--VIKKICLK 535
V + +P + + GLP++CVG VW SW LL+ GF+ L E L
Sbjct: 246 VVAVLPEIDPVLFQGELGLPILCVGSVWKSWELLKEGFLLALTLGREQQAQNSFSSFTLM 305
Query: 536 RLIVTAAYGAAII-ASELG-HSPIKPDYSSTFCVFF 637
+L ++A G A + A +G H P+ DYS F+
Sbjct: 306 KLRHSSALGGASLGARHIGYHLPM--DYSINAIAFY 339
>sp|P20261|LIP1_CANRU Lipase 1 precursor
Length = 549
Score = 30.4 bits (67), Expect = 4.5
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 23 LVHKDLTFHRVGGWGNLLGDEGSAYGIVNGGIK 121
++H + + RV WG L GDE A G N G+K
Sbjct: 164 IIHVSVNY-RVSSWGFLAGDEIKAEGSANAGLK 195
>sp|Q6MUM4|KSGA_MYCMS Dimethyladenosine transferase (S-adenosylmethionine-6-N',
N'-adenosyl(rRNA) dimethyltransferase) (16S rRNA
dimethylase) (High level kasugamycin resistance protein
ksgA) (Kasugamycin dimethyltransferase)
Length = 266
Score = 30.0 bits (66), Expect = 5.9
Identities = 15/29 (51%), Positives = 19/29 (65%)
Frame = +2
Query: 131 DAEEGRIPMETPYSVFKEILFKYLKISDI 217
D E+ I TPY + EILFK L+ISD+
Sbjct: 96 DYEKISIISNTPYYITSEILFKTLQISDL 124
>sp|Q970U8|CARA_SULTO Carbamoyl-phosphate synthase small chain (Carbamoyl-phosphate
synthetase glutamine chain)
Length = 372
Score = 30.0 bits (66), Expect = 5.9
Identities = 26/71 (36%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 425 VCVGGVWGSWNLLESGFIDGLKPKYENDIVIKKICLKRLIVTAAYGAAIIASELGHSPI- 601
V G G+ NLL+ I+ K E I I ICL + T A G + + GH I
Sbjct: 229 VVFGNGPGNPNLLQE-VIENFKELTEYKIPILGICLGHQVATLAMGGKVNKMKFGHRAIN 287
Query: 602 KP--DYSSTFC 628
KP D SS C
Sbjct: 288 KPVIDISSNKC 298
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,181,792
Number of Sequences: 369166
Number of extensions: 1629851
Number of successful extensions: 4057
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4056
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5830600200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)