Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_M11
(857 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subuni... 49 1e-05
sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subuni... 49 1e-05
sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subuni... 45 3e-04
sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subuni... 45 3e-04
sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subuni... 42 0.002
sp|P38177|YBI6_YEAST Hypothetical 52.0 kDa protein in RPL23... 31 5.0
sp|P41653|YCF2_PINTH Protein ycf2 30 8.6
>sp|Q9UIV1|CNOT7_HUMAN CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1)
(CAF1) (BTG1 binding factor 1)
Length = 285
Score = 49.3 bits (116), Expect = 1e-05
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +3
Query: 51 GLQELSKMLKVERRGAQHQAGSDSRLTGESYFKFVLNYMECEIKPEWY-NMIFGMNFGNN 227
GLQE+++ L++ER G QHQAGSDS LTG ++FK + E I Y ++G+ G++
Sbjct: 208 GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSS 267
>sp|Q60809|CNOT7_MOUSE CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1)
(CAF1)
Length = 285
Score = 49.3 bits (116), Expect = 1e-05
Identities = 26/60 (43%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Frame = +3
Query: 51 GLQELSKMLKVERRGAQHQAGSDSRLTGESYFKFVLNYMECEIKPEWY-NMIFGMNFGNN 227
GLQE+++ L++ER G QHQAGSDS LTG ++FK + E I Y ++G+ G++
Sbjct: 208 GLQEVAEQLELERIGPQHQAGSDSLLTGMAFFKMREMFFEDHIDDAKYCGHLYGLGSGSS 267
>sp|Q9UFF9|CNOT8_HUMAN CCR4-NOT transcription complex subunit 8 (CCR4-associated factor 8)
(CAF1-like protein) (CALIFp) (CAF2)
Length = 292
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 GLQELSKMLKVERRGAQHQAGSDSRLTGESYFKFVLNYMECEIKPEWY-NMIFGMNFG 221
GLQE++ L ++R G QHQAGSDS LTG ++F+ + E I Y ++G+ G
Sbjct: 208 GLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTG 265
>sp|Q9D8X5|CNOT8_MOUSE CCR4-NOT transcription complex subunit 8 (CCR4-associated factor 8)
Length = 292
Score = 45.1 bits (105), Expect = 3e-04
Identities = 24/58 (41%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +3
Query: 51 GLQELSKMLKVERRGAQHQAGSDSRLTGESYFKFVLNYMECEIKPEWY-NMIFGMNFG 221
GLQE++ L ++R G QHQAGSDS LTG ++F+ + E I Y ++G+ G
Sbjct: 208 GLQEVADQLDLQRIGRQHQAGSDSLLTGMAFFRMKELFFEDSIDDAKYCGRLYGLGTG 265
>sp|Q17345|CNOT7_CAEEL CCR4-NOT transcription complex subunit 7 (CCR4-associated factor 1)
(CAF1)
Length = 310
Score = 42.4 bits (98), Expect = 0.002
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +3
Query: 51 GLQELSKMLKVERRGAQHQAGSDSRLTGESYFKFVLNYME---CEIKPEWYNMIFGMNFG 221
GLQE++ L V+R+G +HQAGSD+ LT ++FK + +I P +I G FG
Sbjct: 223 GLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQIAP----LICGHMFG 278
Query: 222 NNSNL 236
S+L
Sbjct: 279 LGSSL 283
>sp|P38177|YBI6_YEAST Hypothetical 52.0 kDa protein in RPL23A-BOB1 intergenic region
Length = 466
Score = 30.8 bits (68), Expect = 5.0
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 174 EIKPEWYNMIFGMNFGNNSNLYPPVQSPDDH 266
E++ E+YN +G N GN ++ +PP S D +
Sbjct: 360 EMEEEYYNPNYGNNLGNKASSWPPNPSDDGY 390
>sp|P41653|YCF2_PINTH Protein ycf2
Length = 2054
Score = 30.0 bits (66), Expect = 8.6
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = -1
Query: 236 KITVVSKIHSKYHIIPFWFDFAFH 165
K ++S ++SK+ I+ +FDFAFH
Sbjct: 638 KFDIISNLNSKFDILISFFDFAFH 661
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,862,177
Number of Sequences: 369166
Number of extensions: 1838660
Number of successful extensions: 4550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4547
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)