Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_L21
(493 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UKV5|AMFR2_HUMAN Autocrine motility factor receptor, i... 59 5e-09
sp|Q9R049|AMFR_MOUSE Autocrine motility factor receptor (AM... 59 5e-09
sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-i... 54 2e-07
sp|Q86Y13|DZIP3_HUMAN Ubiquitin ligase protein DZIP3 (DAZ-i... 53 4e-07
sp|P0C034|ATL1K_ARATH Putative RING-H2 finger protein ATL1K... 51 2e-06
sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P (RING-H2... 49 8e-06
sp|Q6NQG7|ATL1L_ARATH RING-H2 finger protein ATL1L 48 1e-05
sp|Q8BGI1|RNF24_MOUSE RING finger protein 24 48 1e-05
sp|Q94BY6|ATL1I_ARATH RING-H2 finger protein ATL1I 48 1e-05
sp|Q6NML0|ATL1J_ARATH RING-H2 finger protein ATL1J 48 1e-05
>sp|Q9UKV5|AMFR2_HUMAN Autocrine motility factor receptor, isoform 2 (AMF receptor) (gp78)
Length = 643
Score = 59.3 bits (142), Expect = 5e-09
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Frame = +1
Query: 1 KATFMLYIDLVSNXXXXXXXXXXXXXMVKVHTLPLFIIRPV-YLSLRSFKKSVQELILSR 177
K T++ Y D V M+ + L + V ++ LR VQ I
Sbjct: 253 KGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRH 312
Query: 178 ----RAIRYMNTVFSNATEADLNAGDNICIICREEMVAGASSGRDQPGNVPKCLPCSHIF 345
R + M F+ AT +L ++ C IC + M A LPC H+F
Sbjct: 313 KNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARK------------LPCGHLF 360
Query: 346 HCACLKTWFQRQQTCPTCRMDI 411
H +CL++W ++ +CPTCRM +
Sbjct: 361 HNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q9R049|AMFR_MOUSE Autocrine motility factor receptor (AMF receptor)
Length = 643
Score = 59.3 bits (142), Expect = 5e-09
Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Frame = +1
Query: 1 KATFMLYIDLVSNXXXXXXXXXXXXXMVKVHTLPLFIIRPV-YLSLRSFKKSVQELILSR 177
K T++ Y D V M+ + L + V ++ LR VQ I
Sbjct: 253 KGTYVYYTDFVMELALLSLDLMHHIHMLLFGNIWLSMASLVIFMQLRYLFHEVQRRIRRH 312
Query: 178 ----RAIRYMNTVFSNATEADLNAGDNICIICREEMVAGASSGRDQPGNVPKCLPCSHIF 345
R + M F+ AT +L ++ C IC + M A LPC H+F
Sbjct: 313 KNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQAARK------------LPCGHLF 360
Query: 346 HCACLKTWFQRQQTCPTCRMDI 411
H +CL++W ++ +CPTCRM +
Sbjct: 361 HNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)
Length = 1204
Score = 53.9 bits (128), Expect = 2e-07
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 8/70 (11%)
Frame = +1
Query: 250 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILR---- 417
C+IC E + P N+ LPC+H FH C++ W +Q TCPTCR+ +L+
Sbjct: 1144 CVICHENL---------SPENL-SVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVLQPEEF 1193
Query: 418 ----NGQLQR 435
NGQL +
Sbjct: 1194 PGHPNGQLPK 1203
>sp|Q86Y13|DZIP3_HUMAN Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3)
(RNA-binding ubiquitin ligase of 138 kDa) (hRUL138)
Length = 1208
Score = 52.8 bits (125), Expect = 4e-07
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 250 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDIL 414
C+IC E + P N+ LPC+H FH C++ W +Q TCPTCR+ +L
Sbjct: 1148 CVICHENL---------SPENL-SVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVL 1192
>sp|P0C034|ATL1K_ARATH Putative RING-H2 finger protein ATL1K (RING-H2 finger protein
ATL10)
Length = 251
Score = 50.8 bits (120), Expect = 2e-06
Identities = 35/99 (35%), Positives = 51/99 (51%)
Frame = +1
Query: 106 FIIRPVYLSLRSFKKSVQELILSRRAIRYMNTVFSNATEADLNAGDNICIICREEMVAGA 285
F+I SL S + S + I ++A+R M V S + E +L D C+IC + V+G
Sbjct: 89 FMISEPVPSLSSTRGSSNKGI-KKKALR-MFPVVSYSPEMNLPGLDEECVICLSDFVSG- 145
Query: 286 SSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCR 402
+Q +PKC +H FH C+ W Q+ TCP CR
Sbjct: 146 ----EQLRLLPKC---NHGFHVRCIDKWLQQHLTCPKCR 177
>sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3)
Length = 324
Score = 48.5 bits (114), Expect = 8e-06
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = +1
Query: 250 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDIL 414
C IC E+V G D+ +PKC +H FH C+ WFQ TCP CR +L
Sbjct: 127 CSICLSELVKG-----DKARLLPKC---NHSFHVECIDMWFQSHSTCPICRNTVL 173
>sp|Q6NQG7|ATL1L_ARATH RING-H2 finger protein ATL1L
Length = 219
Score = 48.1 bits (113), Expect = 1e-05
Identities = 29/79 (36%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Frame = +1
Query: 169 LSRRAIRYMNTVFSNATEADLNAGDNICIICREEMVAGASSGRDQPGNVPKCLP-CSHIF 345
+ R+A++ TV S +TE +L D C IC E VA K LP C H F
Sbjct: 105 VKRKALKSFQTV-SYSTELNLPGLDTECAICLSEFVAEERV---------KLLPTCHHGF 154
Query: 346 HCACLKTWFQRQQTCPTCR 402
H C+ W +CPTCR
Sbjct: 155 HVRCIDKWLSSHSSCPTCR 173
>sp|Q8BGI1|RNF24_MOUSE RING finger protein 24
Length = 148
Score = 47.8 bits (112), Expect = 1e-05
Identities = 25/79 (31%), Positives = 34/79 (43%)
Frame = +1
Query: 247 ICIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQ 426
+C +C E+ RD+ G PC H FH CL W + ++ CP C M +L+ Q
Sbjct: 77 LCAVCLEDF-----KPRDELG----ICPCKHAFHRKCLVKWLEVRKVCPLCNMPVLQLAQ 127
Query: 427 LQRTTAARPNQNGASSAPN 483
L P Q A N
Sbjct: 128 LHSKQDRGPPQEPLPGAEN 146
>sp|Q94BY6|ATL1I_ARATH RING-H2 finger protein ATL1I
Length = 226
Score = 47.8 bits (112), Expect = 1e-05
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +1
Query: 169 LSRRAIRYMNTVFSNATEADLNAGDNICIICREEMVAGASSGRDQPGNVPKCLPCSHIFH 348
++++A+R M V S + E +L C+IC + V+G +Q +PKC H FH
Sbjct: 110 INKKALR-MFPVVSYSPEMNLPGLGEECVICLSDFVSG-----EQIRMLPKC---HHGFH 160
Query: 349 CACLKTWFQRQQTCPTCR 402
C+ W Q+ TCP CR
Sbjct: 161 VRCIDKWLQQHLTCPKCR 178
>sp|Q6NML0|ATL1J_ARATH RING-H2 finger protein ATL1J
Length = 225
Score = 47.8 bits (112), Expect = 1e-05
Identities = 30/92 (32%), Positives = 45/92 (48%)
Frame = +1
Query: 127 LSLRSFKKSVQELILSRRAIRYMNTVFSNATEADLNAGDNICIICREEMVAGASSGRDQP 306
+S S +S + ++A+R M V S + E +L C+IC + V+G +Q
Sbjct: 95 ISSLSTPRSSSNKGIKKKALR-MFPVVSYSREMNLPGIGEECVICLSDFVSG-----EQL 148
Query: 307 GNVPKCLPCSHIFHCACLKTWFQRQQTCPTCR 402
+PKC +H FH C+ W Q TCP CR
Sbjct: 149 RLLPKC---NHGFHVRCIDKWLQHHLTCPKCR 177
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,513,638
Number of Sequences: 369166
Number of extensions: 1105205
Number of successful extensions: 2866
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2858
length of database: 68,354,980
effective HSP length: 102
effective length of database: 49,512,010
effective search space used: 3020232610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)