Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_L20
(899 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC) 222 1e-57
sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC) 217 3e-56
sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC) 217 4e-56
sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC) 216 5e-56
sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC) 216 5e-56
sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xO... 214 3e-55
sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC) 212 1e-54
sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xO... 209 1e-53
sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC) 197 3e-50
sp|P07805|DCOR_TRYBB Ornithine decarboxylase (ODC) 196 7e-50
>sp|P00860|DCOR_MOUSE Ornithine decarboxylase (ODC)
Length = 461
Score = 222 bits (565), Expect = 1e-57
Identities = 119/264 (45%), Positives = 161/264 (60%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY +LG+I + +RW LPR+ PFYAVKC ++S L +G GFDCASK EI+ V
Sbjct: 40 FYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLV- 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
A +I+ANP K I YA+ GV +TFD+E EL+K+++ P +LVLR
Sbjct: 99 ----QGLGVPAERVIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLR 154
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL+++V+GVSFHVGSGC + D F + V
Sbjct: 155 IATDDS-KAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPDTFVQAVS 213
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++A ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++
Sbjct: 214 DARCVFDMATEVGFSMHLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDS 267
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
G +IIAEPGRY+V A+TL +I
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNII 291
>sp|P27117|DCOR_BOVIN Ornithine decarboxylase (ODC)
Length = 461
Score = 217 bits (553), Expect = 3e-56
Identities = 116/264 (43%), Positives = 159/264 (60%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY +LG+I + +RW LPR+ PFYAVKC ++ L +G GFDCASK EI+ V
Sbjct: 40 FYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRTIVKTLAAIGTGFDCASKTEIQLV- 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
+ II+ANP K I YA+ GV +TFD+E EL+K+++ P +LVLR
Sbjct: 99 ----QSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLR 154
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL ++V+GVSFHVGSGC + + F + +
Sbjct: 155 IATDDS-KAVCRLSVKFGATLKTSRLLLERAKELDIDVIGVSFHVGSGCTDPETFVQAIS 213
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++
Sbjct: 214 DARCVFDMGAEVGFNMYLLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPSDS 267
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
G +IIAEPGRY+V A+TL +I
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNII 291
>sp|P09057|DCOR_RAT Ornithine decarboxylase (ODC)
Length = 461
Score = 217 bits (552), Expect = 4e-56
Identities = 116/264 (43%), Positives = 159/264 (60%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY +LG++ + +RW LPR+ PFYAVKC ++S L +G GFDCASK EI+ V
Sbjct: 40 FYVADLGDVLKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAAIGTGFDCASKTEIQLV- 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
II+ANP K I YA+ GV +TFD+E EL+K+++ P +LVLR
Sbjct: 99 ----QGLGVPPERIIYANPCKQVSQIKYAASNGVQMMTFDSEIELMKVARAHPKAKLVLR 154
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL+++V+GVSFHVGSGC + + F + V
Sbjct: 155 IATDDS-KAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAVS 213
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++
Sbjct: 214 DARCVFDMGTEVGFSMYLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDS 267
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
G +IIAEPGRY+V A+TL +I
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNII 291
>sp|P11926|DCOR_HUMAN Ornithine decarboxylase (ODC)
Length = 461
Score = 216 bits (551), Expect = 5e-56
Identities = 117/264 (44%), Positives = 159/264 (60%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY +LG+I + +RW LPR+ PFYAVKC ++ L G GFDCASK EI+ V
Sbjct: 40 FYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSKAIVKTLAATGTGFDCASKTEIQLV- 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
+ II+ANP K I YA+ GV +TFD+E EL+K+++ P +LVLR
Sbjct: 99 ----QSLGVPPERIIYANPCKQVSQIKYAANNGVQMMTFDSEVELMKVARAHPKAKLVLR 154
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL+++VVGVSFHVGSGC + + F + +
Sbjct: 155 IATDDS-KAVCRLSVKFGATLRTSRLLLERAKELNIDVVGVSFHVGSGCTDPETFVQAIS 213
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++
Sbjct: 214 DARCVFDMGAEVGFSMYLLDIGGGFPGSEDV------KLKFEEITGVINPALDKYFPSDS 267
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
G +IIAEPGRY+V A+TL +I
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNII 291
>sp|P27119|DCOR_MUSPA Ornithine decarboxylase (ODC)
Length = 461
Score = 216 bits (551), Expect = 5e-56
Identities = 117/264 (44%), Positives = 159/264 (60%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY +LG+I + +RW LPR+ PFYAVKC ++S L G GFDCASK EI+ V
Sbjct: 40 FYVADLGDILKKHLRWLKALPRVTPFYAVKCNDSRAIVSTLAATGTGFDCASKTEIQLV- 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
II+ANP K I YA+ +GV +TFD+E EL+K+++ P +LVLR
Sbjct: 99 ----QGLGVPPERIIYANPCKQVSQIKYAASSGVQMMTFDSEIELMKVARAHPKAKLVLR 154
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL+++V+GVSFHVGSGC + + F + V
Sbjct: 155 IATDDS-KAVCRLSVKFGATLKTSRLLLERAKELNIDVIGVSFHVGSGCTDPETFVQAVS 213
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF +LDIGGGFPG +LKFEE+ +N LD YFP ++
Sbjct: 214 DARCVFDMGTEVGFSMYLLDIGGGFPGSEDT------KLKFEEITSVINPALDKYFPSDS 267
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
G +IIAEPGRY+V A+TL +I
Sbjct: 268 GVRIIAEPGRYYVASAFTLAVNII 291
>sp|P27120|DCOR1_XENLA Ornithine decarboxylase 1 (ODC 1) (xODC1)
Length = 460
Score = 214 bits (544), Expect = 3e-55
Identities = 116/264 (43%), Positives = 160/264 (60%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY + G+I + +RW LPR+ PFYAVKC ++ L LGAGFDCASK EI+ V
Sbjct: 40 FYVADFGDIVKKHVRWFKALPRVTPFYAVKCNDGKAIVKTLSILGAGFDCASKTEIQLV- 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
+ + II+ANP K I YA+ GV +TFD+E EL+K+++ P +LVLR
Sbjct: 99 ----QSIGVSPERIIYANPCKQVSQIKYAASCGVEKMTFDSEVELMKVARNHPNAKLVLR 154
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL+++++GVSFHVGSGC + + + V
Sbjct: 155 IATDDS-KAVCRLSVKFGATLKTSRLLLERAKELNVDIIGVSFHVGSGCTDPQTYVQAVS 213
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++
Sbjct: 214 DARCVFDMGAELGFNMHLLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPADS 267
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
G KIIAEPGRY+V ++TL +I
Sbjct: 268 GVKIIAEPGRYYVASSFTLAVNII 291
>sp|P27118|DCOR_CHICK Ornithine decarboxylase (ODC)
Length = 450
Score = 212 bits (540), Expect = 1e-54
Identities = 117/264 (44%), Positives = 158/264 (59%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
FY +LG+I + MRW LPR+ PFYAVKC V+ L LGAGFDCASK EI+ V
Sbjct: 30 FYVADLGDIVKKHMRWHKALPRVTPFYAVKCNDSEAVVKTLAVLGAGFDCASKTEIQLV- 88
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
+ II+ANP K I +A+ +GV +TFD+E EL+K+++ P +L+LR
Sbjct: 89 ----QSIGVPPERIIYANPCKQLSQIKHAANSGVRMMTFDSEVELMKIARPHPKAKLLLR 144
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ A C L KFGA LL+RAKEL + +VGVSFHVGSGC + + F + +
Sbjct: 145 ITTDDS-KAVCRLSVKFGATLKTSRLLLERAKELDLAIVGVSFHVGSGCTDPETFVQAIS 203
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF +LDIGGGFPG V +LKFEE+ +N LD YFP ++
Sbjct: 204 DARCVFDMGAELGFNMYLLDIGGGFPGSEDV------KLKFEEITSVINPALDKYFPLDS 257
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
IIAEPGRY+V A+TL +I
Sbjct: 258 EVTIIAEPGRYYVASAFTLAVNII 281
>sp|Q9I8S4|DCOR2_XENLA Ornithine decarboxylase 2 (ODC 2) (xODC2)
Length = 456
Score = 209 bits (531), Expect = 1e-53
Identities = 115/272 (42%), Positives = 163/272 (59%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
F+ +LG++ + +R+ LPR++PFYAVKC V+ L +LGAGFDCASK EI+ V
Sbjct: 39 FFVADLGDVVRKHLRFLKALPRVKPFYAVKCNSSKGVVKILAELGAGFDCASKTEIELVQ 98
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
D A II+ANP K I YA++ GV +TFD E EL K+S+ P ++VLR
Sbjct: 99 D-----VGVAPERIIYANPCKQISQIKYAAKNGVQMMTFDNEVELSKVSRSHPNARMVLR 153
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
++ ++ L KFGA LL+ AK LS++V+GVSFHVGSGC + A+ + +
Sbjct: 154 IATDDS-KSSARLSVKFGAPLKSCRRLLEMAKNLSVDVIGVSFHVGSGCTDSKAYTQAIS 212
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V E+A + G+K +LDIGGGFPG +++FEE+ +N LD YFPE +
Sbjct: 213 DARLVFEMASEFGYKMWLLDIGGGFPGTE------DSKIRFEEIAGVINPALDMYFPESS 266
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVIGVHSLDLS 832
+IIAEPGRY+V A++L VI ++ S
Sbjct: 267 DVQIIAEPGRYYVASAFSLAVNVIAKKEVEHS 298
>sp|P41931|DCOR_CAEEL Ornithine decarboxylase (ODC)
Length = 422
Score = 197 bits (502), Expect = 3e-50
Identities = 115/295 (38%), Positives = 162/295 (54%), Gaps = 1/295 (0%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
F ++L I +F WK LP I+PFYAVKC D +I L LG GFDCASK EI V+
Sbjct: 42 FMLVDLDKIIERFQLWKRELPMIEPFYAVKCNTDLVLIRILASLGCGFDCASKDEIDIVM 101
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
T +A II+ANP K + I +A V +TFD EL+K+++ P +++LR
Sbjct: 102 -----GTGVSAERIIYANPCKTRSFIAHAMDRDVKMMTFDNPEELLKIAKLHPNAEMILR 156
Query: 377 LSPQRVYDATCILGNKFGADAD-EVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETV 553
++ ATC L KFGAD P LL+ A E +NVVG+SFHVGSGCN+ A+ +
Sbjct: 157 IAVSDP-TATCPLNLKFGADPIIAAPQLLKTASEEGINVVGISFHVGSGCNDASAYRNAL 215
Query: 554 IYCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEE 733
+ + E+ +GFK I+D+GGGFPG N FE++ + LD +FP+
Sbjct: 216 QHAKNLCEIGEGLGFKMDIIDMGGGFPGAEHHN-------PFEKIAETIRDALDEFFPDT 268
Query: 734 NGYKIIAEPGRYFVHGAYTLVTQVIGVHSLDLSNPIANINNIACHKSNYETYDSI 898
N ++IAEPGR+F G ++LV +I + S + + A H Y D +
Sbjct: 269 N-KRLIAEPGRFFAAGPFSLVANIIHATEVPASKITKDPKDCADHGYMYYINDGV 322
>sp|P07805|DCOR_TRYBB Ornithine decarboxylase (ODC)
Length = 423
Score = 196 bits (498), Expect = 7e-50
Identities = 110/264 (41%), Positives = 153/264 (57%)
Frame = +2
Query: 17 FYQINLGNIFHQFMRWKNLLPRIQPFYAVKCQPDPKVISFLGKLGAGFDCASKQEIKTVI 196
F+ +LG+I + WK LPR+ PFYAVKC D +V+ L LG GFDCAS EI+ V
Sbjct: 38 FFVADLGDIVRKHETWKKCLPRVTPFYAVKCNDDWRVLGTLAALGTGFDCASNTEIQRV- 96
Query: 197 DSMSYNTTQAATNIIFANPFKFKKDILYASRTGVNTVTFDTESELIKLSQEWPAVQLVLR 376
II+ANP K I YA +GV+ +TFD EL K+++ P ++VLR
Sbjct: 97 ----RGIGVPPEKIIYANPCKQISHIRYARDSGVDVMTFDCVDELEKVAKTHPKAKMVLR 152
Query: 377 LSPQRVYDATCILGNKFGADADEVPFLLQRAKELSMNVVGVSFHVGSGCNEMDAFPETVI 556
+S A C L KFGA ++ F+L++AK+L+++V GVSFHVGSG + F + +
Sbjct: 153 ISTDDSL-ARCRLSVKFGAKVEDCRFILEQAKKLNIDVTGVSFHVGSGSTDASTFAQAIS 211
Query: 557 YCSQVMELARKIGFKPTILDIGGGFPGLSSVNGDLSKQLKFEEMCVKLNHVLDTYFPEEN 736
V ++ ++GF ILDIGGGFPG LKFEE+ +N+ L+ +FP +
Sbjct: 212 DSRFVFDMGTELGFNMHILDIGGGFPGTRDA------PLKFEEIAGVINNALEKHFPPDL 265
Query: 737 GYKIIAEPGRYFVHGAYTLVTQVI 808
I+AEPGRY+V A+TL VI
Sbjct: 266 KLTIVAEPGRYYVASAFTLAVNVI 289
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 104,588,377
Number of Sequences: 369166
Number of extensions: 2183376
Number of successful extensions: 6164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5856
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6044
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)