Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_L09
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C... 495 e-140
sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C... 494 e-139
sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subuni... 489 e-138
sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subu... 485 e-137
sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subu... 485 e-137
sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1 387 e-107
sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1 387 e-107
sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein li... 347 2e-95
sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1 312 9e-85
sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2 279 7e-75
>sp|Q09028|RBBP4_HUMAN Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4) (MSI1
protein homolog)
Length = 425
Score = 495 bits (1275), Expect = e-140
Identities = 223/292 (76%), Positives = 265/292 (90%)
Frame = +1
Query: 25 EKDFDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLH 204
E FDD +EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV PEGKD+ +H
Sbjct: 5 EAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIH 64
Query: 205 RLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINHD 384
RL+LGTHTSDEQNHL+IA+ +P D +FD + Y+ +KGEFGGFGSV+GKIEI IKINH+
Sbjct: 65 RLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHE 124
Query: 385 GEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGLS 564
GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHP+KPDP+G C PDLRL+GHQKEGYGLS
Sbjct: 125 GEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLS 184
Query: 565 WNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFG 744
WNP SG+LLSASDD+TIC+WDI+ P++ +++DA +IFTGH++VVEDVSWHLLHE +FG
Sbjct: 185 WNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVSWHLLHESLFG 244
Query: 745 SVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
SVADD++LMIWDTR++ T++PS SVDAH+AEVNC+SFNP+SE+ILATGSAD+
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADK 296
Score = 57.4 bits (137), Expect = 5e-08
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 322
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 717
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 718 HLLHEHIFGSVADDRQLMIWDTRTSVTN--RPSQSVD 822
+ + SV++D + +W ++ N P SVD
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419
Score = 54.3 bits (129), Expect = 5e-07
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Frame = +1
Query: 502 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 681
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHSF 313
Query: 682 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWD-TRTSVTNRPSQSVD----------AH 828
H + V W +E I S DR+L +WD ++ P + D H
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 829 SAEVNCISFNPFSEYILATGSAD 897
+A+++ S+NP +++ + S D
Sbjct: 374 TAKISDFSWNPNEPWVICSVSED 396
>sp|Q60972|RBBP4_MOUSE Chromatin assembly factor 1 subunit C (CAF-1 subunit C) (Chromatin
assembly factor I p48 subunit) (CAF-I 48 kDa subunit)
(CAF-Ip48) (Retinoblastoma binding protein p48)
(Retinoblastoma-binding protein 4) (RBBP-4)
Length = 461
Score = 494 bits (1272), Expect = e-139
Identities = 223/292 (76%), Positives = 264/292 (90%)
Frame = +1
Query: 25 EKDFDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLH 204
E FDD +EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV PEGKD+ +H
Sbjct: 5 EAAFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTRPEGKDFSIH 64
Query: 205 RLILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINHD 384
RL+LGTHTSDEQNHL+IA+ +P D +FD + Y+ +KGEFGGFGSV+GKIEI IKINH+
Sbjct: 65 RLVLGTHTSDEQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIEIEIKINHE 124
Query: 385 GEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGLS 564
GEVNRARY+PQNP IIATK+PSSDVLVFDYTKHP+KPDP+G C PDLRL+GHQKEGYGLS
Sbjct: 125 GEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSKPDPSGECNPDLRLRGHQKEGYGLS 184
Query: 565 WNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFG 744
WNP SG+LLSASDD+TIC+WDI+ P+ +++DA +IFTGH++VVEDVSWHLLHE +FG
Sbjct: 185 WNPNLSGHLLSASDDHTICLWDISAVPKKGKVVDAKTIFTGHTAVVEDVSWHLLHESLFG 244
Query: 745 SVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
SVADD++LMIWDTR++ T++PS SVDAH+AEVNC+SFNP+SE+ILATGSAD+
Sbjct: 245 SVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADK 296
Score = 57.4 bits (137), Expect = 5e-08
Identities = 40/157 (25%), Positives = 67/157 (42%), Gaps = 9/157 (5%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 272 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 322
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 717
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 323 VQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSW 382
Query: 718 HLLHEHIFGSVADDRQLMIWDTRTSVTN--RPSQSVD 822
+ + SV++D + +W ++ N P SVD
Sbjct: 383 NPNEPWVICSVSEDNIMQVWQMAENIYNDEDPEGSVD 419
Score = 54.3 bits (129), Expect = 5e-07
Identities = 37/143 (25%), Positives = 63/143 (44%), Gaps = 11/143 (7%)
Frame = +1
Query: 502 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 681
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 260 NNTSKPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHSF 313
Query: 682 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWD-TRTSVTNRPSQSVD----------AH 828
H + V W +E I S DR+L +WD ++ P + D H
Sbjct: 314 ESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGH 373
Query: 829 SAEVNCISFNPFSEYILATGSAD 897
+A+++ S+NP +++ + S D
Sbjct: 374 TAKISDFSWNPNEPWVICSVSED 396
>sp|Q24572|CAF1_DROME Chromatin assembly factor 1 P55 subunit (CAF-1 P55 subunit)
(dCAF-1) (Nucleosome remodeling factor 55 kDa subunit)
(NURF-55)
Length = 430
Score = 489 bits (1260), Expect = e-138
Identities = 221/291 (75%), Positives = 264/291 (90%)
Frame = +1
Query: 28 KDFDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLHR 207
+ FDD +EERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDV +GKDY +HR
Sbjct: 10 ESFDDAVEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVTKQDGKDYSVHR 69
Query: 208 LILGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINHDG 387
LILGTHTSDEQNHLLIA+ +P++ +FD + Y+ +KGEFGGFGSV GKIEI IKINH+G
Sbjct: 70 LILGTHTSDEQNHLLIASVQLPSEDAQFDGSHYDNEKGEFGGFGSVCGKIEIEIKINHEG 129
Query: 388 EVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGLSW 567
EVNRARY+PQN +IATK+PSSDVLVFDYTKHP+KP+P+G CQPDLRL+GHQKEGYGLSW
Sbjct: 130 EVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSW 189
Query: 568 NPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFGS 747
NP +GYLLSASDD+TIC+WDIN +P++ R+IDA +IFTGH++VVEDV+WHLLHE +FGS
Sbjct: 190 NPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGS 249
Query: 748 VADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
VADD++LMIWDTR + T++PS +VDAH+AEVNC+SFNP+SE+ILATGSAD+
Sbjct: 250 VADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADK 300
Score = 61.6 bits (148), Expect = 3e-09
Identities = 41/162 (25%), Positives = 67/162 (41%), Gaps = 7/162 (4%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHS---------FESHKDEIFQ 326
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 717
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 327 VQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSW 386
Query: 718 HLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVN 843
+ I SV++D + +W +V N + A E N
Sbjct: 387 NPNEPWIICSVSEDNIMQVWQMAENVYNDEEPEIPASELETN 428
Score = 53.5 bits (127), Expect = 8e-07
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Frame = +1
Query: 502 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 681
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 264 NNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHSF 317
Query: 682 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AH 828
H + V W +E I S DR+L +WD + ++ + H
Sbjct: 318 ESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGH 377
Query: 829 SAEVNCISFNPFSEYILATGSAD 897
+A+++ S+NP +I+ + S D
Sbjct: 378 TAKISDFSWNPNEPWIICSVSED 400
>sp|Q16576|RBBP7_HUMAN Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein P46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 485 bits (1248), Expect = e-137
Identities = 219/289 (75%), Positives = 257/289 (88%)
Frame = +1
Query: 34 FDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLHRLI 213
F+D +EERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+V PEGKDY LH L+
Sbjct: 7 FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLV 66
Query: 214 LGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINHDGEV 393
LGTHTSDEQNHL++A HIP D +FD + + DKGEFGGFGSV GKIE IKINH+GEV
Sbjct: 67 LGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEV 126
Query: 394 NRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGLSWNP 573
NRARY+PQNP IIATK+PSSDVLVFDYTKHPAKPDP+G C PDLRL+GHQKEGYGLSWN
Sbjct: 127 NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNS 186
Query: 574 KRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFGSVA 753
SG+LLSASDD+T+C+WDIN P++ +I+DA +IFTGHS+VVEDV+WHLLHE +FGSVA
Sbjct: 187 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 246
Query: 754 DDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
DD++LMIWDTR++ T++PS VDAH+AEVNC+SFNP+SE+ILATGSAD+
Sbjct: 247 DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 295
Score = 57.8 bits (138), Expect = 4e-08
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 7/160 (4%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT---------FESHKDEIFQ 321
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 717
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 381
Query: 718 HLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 837
+ + SV++D + IW ++ N V E
Sbjct: 382 NPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTTSELE 421
Score = 52.0 bits (123), Expect = 2e-06
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Frame = +1
Query: 502 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 681
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 259 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHTF 312
Query: 682 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AH 828
H + V W +E I S DR+L +WD + ++ + H
Sbjct: 313 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 372
Query: 829 SAEVNCISFNPFSEYILATGSAD 897
+A+++ S+NP +++ + S D
Sbjct: 373 TAKISDFSWNPNEPWVICSVSED 395
>sp|Q60973|RBBP7_MOUSE Histone acetyltransferase type B subunit 2 (Retinoblastoma binding
protein p46) (Retinoblastoma-binding protein 7) (RBBP-7)
Length = 425
Score = 485 bits (1248), Expect = e-137
Identities = 219/289 (75%), Positives = 257/289 (88%)
Frame = +1
Query: 34 FDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLHRLI 213
F+D +EERVINEEYKIWKKNTPFLYDLVMTHAL+WPSLT QWLP+V PEGKDY LH L+
Sbjct: 7 FEDTVEERVINEEYKIWKKNTPFLYDLVMTHALQWPSLTVQWLPEVTKPEGKDYALHWLV 66
Query: 214 LGTHTSDEQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINHDGEV 393
LGTHTSDEQNHL++A HIP D +FD + + DKGEFGGFGSV GKIE IKINH+GEV
Sbjct: 67 LGTHTSDEQNHLVVARVHIPNDDAQFDASHCDSDKGEFGGFGSVTGKIECEIKINHEGEV 126
Query: 394 NRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGLSWNP 573
NRARY+PQNP IIATK+PSSDVLVFDYTKHPAKPDP+G C PDLRL+GHQKEGYGLSWN
Sbjct: 127 NRARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNS 186
Query: 574 KRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFGSVA 753
SG+LLSASDD+T+C+WDIN P++ +I+DA +IFTGHS+VVEDV+WHLLHE +FGSVA
Sbjct: 187 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 246
Query: 754 DDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
DD++LMIWDTR++ T++PS VDAH+AEVNC+SFNP+SE+ILATGSAD+
Sbjct: 247 DDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADK 295
Score = 59.3 bits (142), Expect = 1e-08
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 7/160 (4%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
H EVN + P + I+AT S V ++D K + H+ E +
Sbjct: 271 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHT---------FESHKDEIFQ 321
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDVSW 717
+ W+P L S+ D + +WD++ +Q DA L I GH++ + D SW
Sbjct: 322 VHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSW 381
Query: 718 HLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 837
+ + SV++D + IW ++ N V A E
Sbjct: 382 NPNEPWVICSVSEDNIMQIWQMAENIYNDEESDVTASELE 421
Score = 52.0 bits (123), Expect = 2e-06
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 11/143 (7%)
Frame = +1
Query: 502 NGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIF 681
N +P + H E LS+NP L + S D T+ +WD+ R+ ++ L F
Sbjct: 259 NTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDL----RNLKL--KLHTF 312
Query: 682 TGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AH 828
H + V W +E I S DR+L +WD + ++ + H
Sbjct: 313 ESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGH 372
Query: 829 SAEVNCISFNPFSEYILATGSAD 897
+A+++ S+NP +++ + S D
Sbjct: 373 TAKISDFSWNPNEPWVICSVSED 395
>sp|O22467|MSI1_ARATH WD-40 repeat protein MSI1
Length = 424
Score = 387 bits (993), Expect = e-107
Identities = 175/293 (59%), Positives = 229/293 (78%), Gaps = 1/293 (0%)
Frame = +1
Query: 25 EKDFDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLH 204
E++ IEER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD P GKDY +
Sbjct: 5 EEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQ 64
Query: 205 RLILGTHTSD-EQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINH 381
++ILGTHTS+ E N+L++A +P D E + +Y+ D+ EFGGFG GK++I +INH
Sbjct: 65 KMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQIIQQINH 124
Query: 382 DGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGL 561
DGEVNRARY+PQNP IIATK+ +++V VFDY+KHP+KP +G C PDL+L+GH EGYGL
Sbjct: 125 DGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSKPPLDGACNPDLKLRGHSSEGYGL 184
Query: 562 SWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIF 741
SW+ + G+LLS SDD IC+WDIN +P++ + +DA IF H VVEDV+WHL HE++F
Sbjct: 185 SWSKFKQGHLLSGSDDAQICLWDINATPKN-KSLDAQQIFKAHEGVVEDVAWHLRHEYLF 243
Query: 742 GSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
GSV DD+ L+IWD R+ ++P QSV AHS EVNC++FNPF+E+++ATGS D+
Sbjct: 244 GSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFNPFNEWVVATGSTDK 296
Score = 67.8 bits (164), Expect = 4e-11
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Frame = +1
Query: 373 INHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEG 552
+ H EVN + P N ++AT S V +FD K L H++E
Sbjct: 270 VAHSMEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK---------LSTALHTFDSHKEEV 320
Query: 553 YGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDV 711
+ + WNPK L S + +WD++ +Q + DA L I GH+S + D
Sbjct: 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTVEDAEDGPPELLFIHGGHTSKISDF 380
Query: 712 SWHLLHEHIFGSVADDRQLMIWDTRTSV 795
SW+ + + SVA+D L IW ++
Sbjct: 381 SWNPCEDWVISSVAEDNILQIWQMAENI 408
>sp|O22466|MSI1_LYCES WD-40 repeat protein MSI1
Length = 424
Score = 387 bits (993), Expect = e-107
Identities = 176/293 (60%), Positives = 228/293 (77%), Gaps = 1/293 (0%)
Frame = +1
Query: 25 EKDFDDGIEERVINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLH 204
E + IEER+INEEYKIWKKNTPFLYDLV+THALEWPSLT +WLPD P GKDY +
Sbjct: 5 EDEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPSGKDYSVQ 64
Query: 205 RLILGTHTSD-EQNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKINH 381
++ILGTHTS+ E N+L++A +P + E D Y+ D+ EFGGFG NGK++I +INH
Sbjct: 65 KMILGTHTSENEPNYLMLAQVQLPLEDAENDARHYDDDRSEFGGFGCANGKVQIIQQINH 124
Query: 382 DGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGL 561
DGEVNRARY+PQNP IIATK+ S++V VFDY+KHP+KP +G C PDLRL+GH EGYGL
Sbjct: 125 DGEVNRARYMPQNPFIIATKTVSAEVYVFDYSKHPSKPPLDGACNPDLRLRGHSTEGYGL 184
Query: 562 SWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIF 741
SW+ + G+LLS SDD+ IC+WDIN +P++ + ++A+ IF H VVEDV+WHL HE++F
Sbjct: 185 SWSQFKQGHLLSGSDDSHICLWDINATPKN-KALEAMQIFKVHEGVVEDVAWHLRHEYLF 243
Query: 742 GSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
GSV DD+ L +WD RT +P QSV AH +EVNC++FNPF+E+++ATGS D+
Sbjct: 244 GSVGDDQYLHVWDLRTPSVTKPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDK 296
Score = 65.9 bits (159), Expect = 2e-10
Identities = 42/148 (28%), Positives = 65/148 (43%), Gaps = 7/148 (4%)
Frame = +1
Query: 373 INHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEG 552
+ H EVN + P N ++AT S V +FD K + L H++E
Sbjct: 270 VAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDLRK---------ISTALHTLDCHKEEV 320
Query: 553 YGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVVEDV 711
+ + WNPK L S + +WD++ +Q DA L I GH+S + D
Sbjct: 321 FQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKISDF 380
Query: 712 SWHLLHEHIFGSVADDRQLMIWDTRTSV 795
SW+ + + SVA+D L IW ++
Sbjct: 381 SWNPCEDWVVASVAEDNILQIWQMAENI 408
Score = 51.6 bits (122), Expect = 3e-06
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 11/139 (7%)
Frame = +1
Query: 514 QPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHS 693
+P + HQ E L++NP + + S D T+ ++D+ ++I AL H
Sbjct: 264 KPIQSVVAHQSEVNCLAFNPFNEWVVATGSTDKTVKLFDL------RKISTALHTLDCHK 317
Query: 694 SVVEDVSWHLLHEHIFGSVADDRQLMIWD-TRTSVTNRPSQSVD----------AHSAEV 840
V V W+ +E I S R+LM+WD +R P + D H++++
Sbjct: 318 EEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAEDGPPELLFIHGGHTSKI 377
Query: 841 NCISFNPFSEYILATGSAD 897
+ S+NP ++++A+ + D
Sbjct: 378 SDFSWNPCEDWVVASVAED 396
>sp|P90916|LIN53_CAEEL Trp-Asp repeats containing protein lin-53 (Abnormal cell lineage
protein 53)
Length = 385
Score = 347 bits (891), Expect = 2e-95
Identities = 161/261 (61%), Positives = 202/261 (77%)
Frame = +1
Query: 118 MTHALEWPSLTAQWLPDVVCPEGKDYGLHRLILGTHTSDEQNHLLIATAHIPTDSNEFDI 297
MTHALEWPSL+ QWLPDV + D+ +HRLILGTHTSDEQNHLLI+ +PTD +FD
Sbjct: 1 MTHALEWPSLSVQWLPDVA-KDNSDHTIHRLILGTHTSDEQNHLLISKICMPTDDAQFDA 59
Query: 298 NKYEPDKGEFGGFGSVNGKIEINIKINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYT 477
++Y+ ++ E+GGFG+VNGK+E +I+INH+GEVNRARY+PQ IIATKSP +DV +FDY
Sbjct: 60 SRYDTERSEYGGFGAVNGKVEPDIRINHEGEVNRARYMPQKSNIIATKSPHADVYIFDYL 119
Query: 478 KHPAKPDPNGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQR 657
KH A P N P +RLKGH KEGYGLSWNP + G +LSASDD T+C WDIN +
Sbjct: 120 KHSAVPRDNTF-NPLIRLKGHTKEGYGLSWNPNKEGLILSASDDQTVCHWDINANQNVAG 178
Query: 658 IIDALSIFTGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 837
+ A +F GH SVVEDV+WH+LH+ +FGSV DD++L+IWD RTS P +DAHSAE
Sbjct: 179 ELQAKDVFKGHESVVEDVAWHVLHDGVFGSVGDDKKLLIWDVRTST---PGHCIDAHSAE 235
Query: 838 VNCISFNPFSEYILATGSADR 900
VNC++FNP+SE+ILATGSAD+
Sbjct: 236 VNCLAFNPYSEFILATGSADK 256
Score = 60.8 bits (146), Expect = 5e-09
Identities = 42/165 (25%), Positives = 69/165 (41%), Gaps = 12/165 (7%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLK-----GHQ 543
H EVN + P + I+AT S V ++D +LR+K H+
Sbjct: 232 HSAEVNCLAFNPYSEFILATGSADKTVALWDLR--------------NLRMKLHSFESHR 277
Query: 544 KEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA-------LSIFTGHSSVV 702
E + + W+P L S+ D + +WD++ DQ DA L I GH++ +
Sbjct: 278 DEIFQVQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKI 337
Query: 703 EDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAE 837
D SW+ + SV++D L +W ++ N + A E
Sbjct: 338 SDFSWNPNEPWVVCSVSEDNILQVWQMADNIYNEVDEETPADVVE 382
Score = 48.9 bits (115), Expect = 2e-05
Identities = 32/134 (23%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Frame = +1
Query: 529 LKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVED 708
+ H E L++NP L + S D T+ +WD+ R+ R+ L F H +
Sbjct: 229 IDAHSAEVNCLAFNPYSEFILATGSADKTVALWDL----RNLRM--KLHSFESHRDEIFQ 282
Query: 709 VSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVD-----------AHSAEVNCISF 855
V W +E I S D++L +WD ++ ++ + H+A+++ S+
Sbjct: 283 VQWSPHNETILASSGTDKRLHVWDLSKIGEDQSAEDAEDGPPELLFIHGGHTAKISDFSW 342
Query: 856 NPFSEYILATGSAD 897
NP +++ + S D
Sbjct: 343 NPNEPWVVCSVSED 356
>sp|P90917|RBA1_CAEEL Trp-Asp repeats containing protein RBA-1
Length = 412
Score = 312 bits (799), Expect = 9e-85
Identities = 153/281 (54%), Positives = 197/281 (70%), Gaps = 2/281 (0%)
Frame = +1
Query: 64 NEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKDYGLHRLILGTHT-SDEQ 240
++E++IWKKN P+LYD V+T +EWPSL+ QW+PDV E D +HR+I GTHT Q
Sbjct: 11 SKEHRIWKKNVPYLYDTVVTKEVEWPSLSVQWMPDVTKTENSDSSMHRMIHGTHTCGGVQ 70
Query: 241 NHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNG-KIEINIKINHDGEVNRARYLPQ 417
NHL+I+ I TD+ EFD K++ ++ EFGG+G + K + IKINH GEV+RARY+P
Sbjct: 71 NHLMISKFTITTDTPEFDDAKWDSEREEFGGYGEGSAAKWDTEIKINHPGEVHRARYMPH 130
Query: 418 NPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLS 597
NP IIA++ PS DV +FDYTKHP++P +P LRLKGH+ EGYG+SW+ R G+LL+
Sbjct: 131 NPFIIASRGPSDDVYIFDYTKHPSEPKDTKF-RPQLRLKGHEGEGYGMSWSNTREGHLLT 189
Query: 598 ASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFGSVADDRQLMIW 777
A DD IC WDIN + I S F GHSS EDVS+H LH +FGSV DDR+L +W
Sbjct: 190 AGDDGMICHWDINANQTISGQIVPQSKFKGHSSNAEDVSFHALHNFVFGSVGDDRKLNLW 249
Query: 778 DTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSADR 900
D R S +P + H+AEVNCI+FNPFSEYILATGS D+
Sbjct: 250 DLRQS---KPQLTAVGHTAEVNCITFNPFSEYILATGSVDK 287
Score = 48.9 bits (115), Expect = 2e-05
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 20/176 (11%)
Frame = +1
Query: 334 FGSVNGKIEINI-----------KINHDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTK 480
FGSV ++N+ + H EVN + P + I+AT S V ++D
Sbjct: 237 FGSVGDDRKLNLWDLRQSKPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDMRN 296
Query: 481 HPAKPDPNGLCQPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDIN-------- 636
K LK H E + +S++P L S+ D+ + +WDI+
Sbjct: 297 MRKKM---------YTLKHHNDEIFQVSFSPHYETVLASSGSDDRVIVWDISKIQDPSSS 347
Query: 637 -TSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTN 801
+ D + + I GH+ V D SW+ S + L +W+ S+ +
Sbjct: 348 SAASSDSVPPEVIFIHAGHTGKVADFSWNPNRPWTICSSDEFNALQVWEVSNSLVS 403
Score = 40.4 bits (93), Expect = 0.007
Identities = 30/109 (27%), Positives = 49/109 (44%)
Frame = +1
Query: 514 QPDLRLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHS 693
+P L GH E +++NP L + S D T+ +WD+ R+ R + H+
Sbjct: 255 KPQLTAVGHTAEVNCITFNPFSEYILATGSVDKTVALWDM----RNMR--KKMYTLKHHN 308
Query: 694 SVVEDVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEV 840
+ VS+ +E + S D ++++WD S PS S A S V
Sbjct: 309 DEIFQVSFSPHYETVLASSGSDDRVIVWD--ISKIQDPSSSSAASSDSV 355
>sp|O22468|MSI2_ARATH WD-40 repeat protein MSI2
Length = 415
Score = 279 bits (714), Expect = 7e-75
Identities = 139/293 (47%), Positives = 192/293 (65%), Gaps = 6/293 (2%)
Frame = +1
Query: 37 DDGIEER---VINEEYKIWKKNTPFLYDLVMTHALEWPSLTAQWLPDVVCPEGKD--YGL 201
D+G EE + E++ +WKKNTPFLYDL+++H LEWPSLT W+P P D +G+
Sbjct: 3 DEGKEETGMGQVEEDFSVWKKNTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGV 62
Query: 202 HRLILGTHTSDE-QNHLLIATAHIPTDSNEFDINKYEPDKGEFGGFGSVNGKIEINIKIN 378
H+LILGTHTS Q+ L++A PT + E I D K+EI +I
Sbjct: 63 HKLILGTHTSGSAQDFLMVADVVTPTPNAEPGIGGANQDP--------FIPKVEIRQRIR 114
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
DGEVNRAR +PQ PT++ K+ +V +FDY KH AK + C PDLRL GH KEGYG
Sbjct: 115 VDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAKSQTSE-CDPDLRLVGHDKEGYG 173
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVEDVSWHLLHEHI 738
LSW+P + GYLLS S D IC+WD++ +P+D ++++A+ ++ GH S + DVSWH+ +E++
Sbjct: 174 LSWSPFKEGYLLSGSQDQKICLWDVSATPQD-KVLNAMFVYEGHESAIADVSWHMKNENL 232
Query: 739 FGSVADDRQLMIWDTRTSVTNRPSQSVDAHSAEVNCISFNPFSEYILATGSAD 897
FGS +D +L+IWDTR TN+ V H EVN +SFNPF+E++LAT S+D
Sbjct: 233 FGSAGEDGRLVIWDTR---TNQMQHQVKVHEREVNYLSFNPFNEWVLATASSD 282
Score = 67.4 bits (163), Expect = 5e-11
Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Frame = +1
Query: 379 HDGEVNRARYLPQNPTIIATKSPSSDVLVFDYTKHPAKPDPNGLCQPDLRLKGHQKEGYG 558
H+ EVN + P N ++AT S S V +FD K L P + H+ E +
Sbjct: 259 HEREVNYLSFNPFNEWVLATASSDSTVALFDLRK---------LNAPLHVMSSHEGEVFQ 309
Query: 559 LSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDA---------LSIFTGHSSVVEDV 711
+ W+P L S+ +D + +WD+N +Q I+ L GH + + D
Sbjct: 310 VEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISDF 369
Query: 712 SWHLLHEHIFGSVADDRQLMIWDTRTSV 795
+W+ + SVA+D L +W S+
Sbjct: 370 AWNKNEPWVIASVAEDNSLQVWQMAESI 397
Score = 57.0 bits (136), Expect = 7e-08
Identities = 34/137 (24%), Positives = 66/137 (48%), Gaps = 13/137 (9%)
Frame = +1
Query: 526 RLKGHQKEGYGLSWNPKRSGYLLSASDDNTICMWDINTSPRDQRIIDALSIFTGHSSVVE 705
++K H++E LS+NP L +AS D+T+ ++D+ +++ L + + H V
Sbjct: 255 QVKVHEREVNYLSFNPFNEWVLATASSDSTVALFDL------RKLNAPLHVMSSHEGEVF 308
Query: 706 DVSWHLLHEHIFGSVADDRQLMIWDTRTSVTNRPSQSVDA-------------HSAEVNC 846
V W HE + S +DR+LM+WD + +DA H A+++
Sbjct: 309 QVEWDPNHETVLASSGEDRRLMVWDLNRVGEEQLEIELDAEDGPPELLFSHGGHKAKISD 368
Query: 847 ISFNPFSEYILATGSAD 897
++N +++A+ + D
Sbjct: 369 FAWNKNEPWVIASVAED 385
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.136 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,826,594
Number of Sequences: 369166
Number of extensions: 2546913
Number of successful extensions: 8138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7728
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)