Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_L07
(262 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubar... 48 8e-06
sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 ... 46 2e-05
sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 ... 45 7e-05
sp|P46771|RSSA_STRPU 40S ribosomal protein SA (p40) (34/67 ... 45 7e-05
sp|Q01661|RS0_PNECA 40S ribosomal protein S0 (Extracellular... 43 3e-04
sp|O22518|RSSA_SOYBN 40S ribosomal protein SA (p40) 42 3e-04
sp|O80377|RSSA_DAUCA 40S ribosomal protein SA (p40) 42 3e-04
sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Lam... 42 4e-04
sp|Q01291|RS0_NEUCR 40S ribosomal protein S0 (Ribosome-asso... 42 4e-04
sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA (p40) (Lamini... 42 4e-04
>sp|P38979|RSSA_DROME 40S ribosomal protein SA (p40) (Stubarista protein) (Laminin
receptor homolog) (K14)
Length = 270
Score = 47.8 bits (112), Expect = 8e-06
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQ 112
LAREV R++G ISRS+EW V VDLF R EE +K++
Sbjct: 178 LAREVLRLRGTISRSVEWPVVVDLFFYRDPEEAEKEE 214
>sp|P38981|RSSA_URECA 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 317
Score = 46.2 bits (108), Expect = 2e-05
Identities = 22/45 (48%), Positives = 28/45 (62%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDDENLPQE 136
LAREV R++G ISR + W+V VDLF R EE +K+ E E
Sbjct: 178 LAREVLRLRGTISREVPWEVMVDLFFYRDPEEAEKEAQAEQAAAE 222
>sp|P38980|RSSA_TRIGR 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 316
Score = 44.7 bits (104), Expect = 7e-05
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 8/79 (10%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDD--------ENLPQEINAINIG 157
L+REV R++G ISR + W++ DL+ R EE +K++ + + P + A
Sbjct: 178 LSREVLRLRGAISRDVTWEIMCDLYFFRDPEEAEKEEQEARDRATAVKEEPAQPYA-EQW 236
Query: 158 GEEAGFGPIGQPSQQLDDW 214
+ P GQP ++ DW
Sbjct: 237 SDPVAVPPAGQPVAEVTDW 255
>sp|P46771|RSSA_STRPU 40S ribosomal protein SA (p40) (34/67 kDa laminin binding protein)
Length = 264
Score = 44.7 bits (104), Expect = 7e-05
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 12/83 (14%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDD--------ENLPQEINAINIG 157
L+REV R++G ISR + W++ VDL+ R EE +K++ + + P + A G
Sbjct: 101 LSREVLRLRGAISRDVTWEIMVDLYFFRDPEEAEKEEQEARDRAVAVKEEPAQPYAEQWG 160
Query: 158 GE----EAGFGPIGQPSQQLDDW 214
+ AG P+G P + DW
Sbjct: 161 SDPVAVPAGGQPVGVP--DVTDW 181
>sp|Q01661|RS0_PNECA 40S ribosomal protein S0 (Extracellular matrix receptor protein)
Length = 295
Score = 42.7 bits (99), Expect = 3e-04
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 LAREVCRMKGGIS-RSIEWDVKVDLFINRSVEEEDKQQDDENLPQEINAINIGGEEAG-F 175
LAREV R++G ++ R +EW + VDL+ R EE +K + E A+ G AG F
Sbjct: 176 LAREVLRLRGTLANRDVEWGIMVDLYFYRDPEETEKDTESEQ-----KALEASGNPAGQF 230
Query: 176 GPIGQPSQQLDDWQ 217
G + S DW+
Sbjct: 231 GSVPVTS----DWE 240
>sp|O22518|RSSA_SOYBN 40S ribosomal protein SA (p40)
Length = 310
Score = 42.4 bits (98), Expect = 3e-04
Identities = 22/43 (51%), Positives = 28/43 (65%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDDENLP 130
LAR V +M+G I ++WDV VDLF R EE KQQ++E P
Sbjct: 185 LARMVLQMRGTIRPGLKWDVMVDLFFYRE-PEEAKQQEEEEAP 226
>sp|O80377|RSSA_DAUCA 40S ribosomal protein SA (p40)
Length = 297
Score = 42.4 bits (98), Expect = 3e-04
Identities = 22/43 (51%), Positives = 30/43 (69%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDDENLP 130
LAR V +M+G IS+ +W+V VDLF R EE K Q++E+LP
Sbjct: 178 LARMVLQMRGVISQGHKWEVMVDLFFYRE-PEETKDQEEEDLP 219
>sp|Q08682|RSSAA_ARATH 40S ribosomal protein SA-1 (p40) (Laminin receptor homolog)
Length = 298
Score = 42.0 bits (97), Expect = 4e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDDENLPQ 133
LAR V +M+G I+ +WDV VDLF R EE + +DE PQ
Sbjct: 182 LARMVLQMRGTIAAGQKWDVMVDLFFYREPEETKPEDEDEAGPQ 225
>sp|Q01291|RS0_NEUCR 40S ribosomal protein S0 (Ribosome-associated protein 1)
Length = 290
Score = 42.0 bits (97), Expect = 4e-04
Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 2 LAREVCRMKGGI-SRSIEWDVKVDLFINRSVE-EEDKQQDDENLPQEINAINIGGEEAGF 175
LAREV R++G I +R WDV VDL+ R E E +++ ++E LP G EE G
Sbjct: 180 LAREVLRLRGTIYNRETPWDVMVDLYFYRDPEAEAEEKVEEEKLP--------GVEEEGV 231
Query: 176 GPIGQPSQQLDDWQ 217
I DW+
Sbjct: 232 AAIESGFPATGDWE 245
>sp|Q9ZSR8|RSSA_BRANA 40S ribosomal protein SA (p40) (Laminin receptor-like protein)
Length = 292
Score = 42.0 bits (97), Expect = 4e-04
Identities = 21/44 (47%), Positives = 27/44 (61%)
Frame = +2
Query: 2 LAREVCRMKGGISRSIEWDVKVDLFINRSVEEEDKQQDDENLPQ 133
LAR V +M+G I + +WDV VDLF R EE + +DE PQ
Sbjct: 179 LARMVLQMRGTIRPAQKWDVMVDLFFYREPEETKPEDEDEVAPQ 222
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,857,729
Number of Sequences: 369166
Number of extensions: 385001
Number of successful extensions: 1476
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1468
length of database: 68,354,980
effective HSP length: 57
effective length of database: 57,825,085
effective search space used: 1676927465
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)