Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K22
(900 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9R049|AMFR_MOUSE Autocrine motility factor receptor (AM... 76 1e-13
sp|Q9UKV5|AMFR2_HUMAN Autocrine motility factor receptor, i... 76 1e-13
sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P (RING-H2... 55 3e-07
sp|Q86Y13|DZIP3_HUMAN Ubiquitin ligase protein DZIP3 (DAZ-i... 53 1e-06
sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-i... 53 1e-06
sp|Q91YL2|RN126_MOUSE RING finger protein 126 52 3e-06
sp|Q6DIP3|RN126_XENTR RING finger protein 126 52 3e-06
sp|Q6IRP0|R126B_XENLA RING finger protein 126-B 51 4e-06
sp|O54965|RNF13_MOUSE RING finger protein 13 51 5e-06
sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A 50 7e-06
>sp|Q9R049|AMFR_MOUSE Autocrine motility factor receptor (AMF receptor)
Length = 643
Score = 76.3 bits (186), Expect = 1e-13
Identities = 50/173 (28%), Positives = 79/173 (45%), Gaps = 8/173 (4%)
Frame = +1
Query: 112 ILFRYVLHTIDSRRETPWDQKATFMLYIDLVSNXXXXXXXXXXXXXMVKVHTLPLFIIRP 291
++ RYV+H D E W+ K T++ Y D V M+ + L +
Sbjct: 233 VILRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELALLSLDLMHHIHMLLFGNIWLSMASL 292
Query: 292 V-YLSLRSFKKSVQDLILSRRAIHYMNTV------FSNATEADLNAGDNICIICREEMVA 450
V ++ LR VQ I RR +Y+ V F+ AT +L ++ C IC + M A
Sbjct: 293 VIFMQLRYLFHEVQRRI--RRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQA 350
Query: 451 GASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDI-LRNGQQQR 606
LPC H+FH +CL++W ++ +CPTCRM + + +G + R
Sbjct: 351 ARK------------LPCGHLFHNSCLRSWLEQDTSCPTCRMSLNIADGSRAR 391
>sp|Q9UKV5|AMFR2_HUMAN Autocrine motility factor receptor, isoform 2 (AMF receptor) (gp78)
Length = 643
Score = 75.9 bits (185), Expect = 1e-13
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 7/164 (4%)
Frame = +1
Query: 112 ILFRYVLHTIDSRRETPWDQKATFMLYIDLVSNXXXXXXXXXXXXXMVKVHTLPLFIIRP 291
++ RYV+H D E W+ K T++ Y D V M+ + L +
Sbjct: 233 VILRYVIHLWDLNHEGTWEGKGTYVYYTDFVMELTLLSLDLMHHIHMLLFGNIWLSMASL 292
Query: 292 V-YLSLRSFKKSVQDLILSRRAIHYMNTV------FSNATEADLNAGDNICIICREEMVA 450
V ++ LR VQ I RR +Y+ V F+ AT +L ++ C IC + M A
Sbjct: 293 VIFMQLRYLFHEVQRRI--RRHKNYLRVVGNMEARFAVATPEELAVNNDDCAICWDSMQA 350
Query: 451 GASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDI 582
LPC H+FH +CL++W ++ +CPTCRM +
Sbjct: 351 ARK------------LPCGHLFHNSCLRSWLEQDTSCPTCRMSL 382
>sp|Q9XF63|ATL1P_ARATH RING-H2 finger protein ATL1P (RING-H2 finger protein ATL3)
Length = 324
Score = 54.7 bits (130), Expect = 3e-07
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 3/97 (3%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDIL--RNG 594
C IC E+V G D+ +PKC +H FH C+ WFQ TCP CR +L
Sbjct: 127 CSICLSELVKG-----DKARLLPKC---NHSFHVECIDMWFQSHSTCPICRNTVLGPEQA 178
Query: 595 QQQRTTAARPNQNGASSAPNGAQATTP-NTGTNQFPT 702
+R N A + N A + +T + +FPT
Sbjct: 179 SSKRVEQVPDNAENAGTTNNNHDALSQLSTSSPEFPT 215
>sp|Q86Y13|DZIP3_HUMAN Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3)
(RNA-binding ubiquitin ligase of 138 kDa) (hRUL138)
Length = 1208
Score = 52.8 bits (125), Expect = 1e-06
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDIL 585
C+IC E + P N+ LPC+H FH C++ W +Q TCPTCR+ +L
Sbjct: 1148 CVICHENL---------SPENL-SVLPCAHKFHAQCIRPWLMQQGTCPTCRLHVL 1192
>sp|Q7TPV2|DZIP3_MOUSE Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog)
Length = 1204
Score = 52.8 bits (125), Expect = 1e-06
Identities = 22/56 (39%), Positives = 32/56 (57%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILR 588
C+IC E + P N+ LPC+H FH C++ W +Q TCPTCR+ +L+
Sbjct: 1144 CVICHENL---------SPENL-SVLPCAHKFHSQCIRPWLMQQGTCPTCRLHVLQ 1189
>sp|Q91YL2|RN126_MOUSE RING finger protein 126
Length = 313
Score = 51.6 bits (122), Expect = 3e-06
Identities = 24/86 (27%), Positives = 43/86 (50%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQ 600
C +C+E+ G S + LPC+H+FH +C+ W ++ +CP CR + GQ
Sbjct: 231 CPVCKEDYALGESVRQ---------LPCNHLFHDSCIVPWLEQHDSCPVCRKSL--TGQN 279
Query: 601 QRTTAARPNQNGASSAPNGAQATTPN 678
T G SS+ + + +++P+
Sbjct: 280 TATNPPGLTGVGFSSSSSSSSSSSPS 305
>sp|Q6DIP3|RN126_XENTR RING finger protein 126
Length = 311
Score = 51.6 bits (122), Expect = 3e-06
Identities = 26/90 (28%), Positives = 42/90 (46%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQ 600
C +C+E+ G S + LPC+H+FH C+ W ++ TCP CR + +GQ
Sbjct: 227 CPVCKEDYTVGESVRQ---------LPCNHLFHNDCIIPWLEQHDTCPVCRKSL--SGQN 275
Query: 601 QRTTAARPNQNGASSAPNGAQATTPNTGTN 690
T + SS+ + ++T T N
Sbjct: 276 TATNPPGLTEMTFSSSSTSSSSSTSPTDEN 305
>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B
Length = 312
Score = 51.2 bits (121), Expect = 4e-06
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQ 600
C +C+E+ G S + LPC+H+FH C+ W ++ TCP CR + +GQ
Sbjct: 228 CPVCKEDYTVGESVRQ---------LPCNHLFHNDCIIPWLEQHDTCPVCRKSL--SGQN 276
Query: 601 QRTT-AARPNQNGASSAPNGAQATTPNTGTN 690
T + +SS+ + + +T+P N
Sbjct: 277 TATNPPGLTDMTFSSSSTSSSSSTSPTDENN 307
>sp|O54965|RNF13_MOUSE RING finger protein 13
Length = 381
Score = 50.8 bits (120), Expect = 5e-06
Identities = 28/97 (28%), Positives = 45/97 (46%), Gaps = 6/97 (6%)
Frame = +1
Query: 415 NICIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQR-QQTCPTCRMDIL-R 588
++C IC EE + G+ + LPCSH +HC C+ W + ++TCP C+ ++
Sbjct: 238 DVCAICLEEY---------EDGDKLRILPCSHAYHCKCVDPWLTKTKKTCPVCKQKVVPS 288
Query: 589 NGQQQRTTAARPNQNGASS----APNGAQATTPNTGT 687
G T + +N S P A A T + G+
Sbjct: 289 QGDSDSDTDSSQEENQVSEHTPLLPPSASARTQSFGS 325
>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A
Length = 312
Score = 50.4 bits (119), Expect = 7e-06
Identities = 25/90 (27%), Positives = 42/90 (46%)
Frame = +1
Query: 421 CIICREEMVAGASSGRDQPGNVPKCLPCSHIFHCACLKTWFQRQQTCPTCRMDILRNGQQ 600
C +C+E+ G + LPC+H+FH C+ W ++ TCP CR + +GQ
Sbjct: 228 CPVCKEDYTVG---------ECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL--SGQN 276
Query: 601 QRTTAARPNQNGASSAPNGAQATTPNTGTN 690
T ++ SS+ + ++T T N
Sbjct: 277 TATNPPGLSEMTFSSSSTSSSSSTSPTDEN 306
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,870,226
Number of Sequences: 369166
Number of extensions: 1775758
Number of successful extensions: 4721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4705
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9078450570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)