Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K18-2
(240 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15... 52 6e-07
sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15... 45 7e-05
sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Kerat... 32 0.46
sp|O27719|YG84_METTH Hypothetical protein MTH1684 32 0.60
sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich ... 31 1.0
sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2) 30 1.3
sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich ... 30 1.3
sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Kera... 30 1.3
sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2) 30 1.3
sp|P18751|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1 30 1.7
>sp|Q9NZF1|PLAC8_HUMAN Placenta-specific gene 8 protein (C15 protein)
Length = 115
Score = 51.6 bits (122), Expect = 6e-07
Identities = 29/79 (36%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
Frame = +3
Query: 3 AEWQHGLCGCCSDCGTCLLSYLC-PCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRK 179
+ WQ G+C C SDCG CL C PC +G A + C LCG S +R
Sbjct: 24 SNWQTGMCDCFSDCGVCLCGTFCFPC--LGCQVAADMNECCLCGTS---------VAMRT 72
Query: 180 KVREKRGISGNFCYDLVAS 236
R + GI G+ C D +A+
Sbjct: 73 LYRTRYGIPGSICDDYMAT 91
>sp|Q9JI48|PLAC8_MOUSE Placenta-specific gene 8 protein (C15 protein) (Onzin)
Length = 112
Score = 44.7 bits (104), Expect = 7e-05
Identities = 26/78 (33%), Positives = 34/78 (43%)
Frame = +3
Query: 3 AEWQHGLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPCIGALIRKK 182
+ WQ LC C SDCG CL C L G A + C LCG + +R
Sbjct: 21 SNWQTSLCDCFSDCGVCLCGTFCFTCL-GCQVAADMNECCLCGTT---------VAMRTL 70
Query: 183 VREKRGISGNFCYDLVAS 236
R + GI G+ C D + +
Sbjct: 71 YRTRYGIPGSICDDYMVT 88
>sp|P26371|KRA59_HUMAN Keratin-associated protein 5-9 (Keratin-associated protein 5.9)
(Ultrahigh sulfur keratin-associated protein 5.9)
(Keratin, cuticle, ultrahigh sulfur 1) (Keratin, ultra
high-sulfur matrix protein A) (UHS keratin A) (UHS KerA)
Length = 169
Score = 32.0 bits (71), Expect = 0.46
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +3
Query: 18 GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPC 158
G CGC CG+ C G G SC C YC P C
Sbjct: 2 GCCGCSGGCGSSCGGCDSSCGSCGSGCRGCGPSC--CAPVYCCKPVC 46
>sp|O27719|YG84_METTH Hypothetical protein MTH1684
Length = 431
Score = 31.6 bits (70), Expect = 0.60
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 33 CSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGL 134
C+DC CL + CP + + + D CF CG+
Sbjct: 345 CTDCAVCLAARRCPTHAIDNGLDL--DRCFGCGV 376
>sp|P23327|SRCH_HUMAN Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 699
Score = 30.8 bits (68), Expect = 1.0
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Frame = +3
Query: 21 LCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 161
LCG CS C C C C D E +G+ C C +C + P +
Sbjct: 626 LCGYCSFCNRCTECESCHC-----DEENMGEHCDQCQHCQFCYLCPLV 668
>sp|Q92800|EZH1_HUMAN Enhancer of zeste homolog 1 (ENX-2)
Length = 747
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 191
C C + C T CPCYL ++ + D C CG S C + C I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613
>sp|P16230|SRCH_RABIT Sarcoplasmic reticulum histidine-rich calcium-binding protein
precursor
Length = 852
Score = 30.4 bits (67), Expect = 1.3
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +3
Query: 12 QHGLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLC-GLSYCIIPPCI 161
Q LCG C+ C C C C D +++G+ C C +C + P +
Sbjct: 776 QGSLCGYCTFCNRCTECEHCHC-----DEDSMGEHCDQCQHCQFCYLCPLV 821
>sp|Q6L8G5|KR510_HUMAN Keratin-associated protein 5-10 (Keratin-associated protein 5.10)
(Ultrahigh sulfur keratin-associated protein 5.10)
Length = 202
Score = 30.4 bits (67), Expect = 1.3
Identities = 16/47 (34%), Positives = 18/47 (38%)
Frame = +3
Query: 18 GLCGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSYCIIPPC 158
G CGC CG+ C G G C CG S C +P C
Sbjct: 2 GCCGCSGGCGSGCGGCGSGCGGCGSGCGGYGSGCGGCG-SSCCVPVC 47
>sp|P70351|EZH1_MOUSE Enhancer of zeste homolog 1 (ENX-2)
Length = 747
Score = 30.4 bits (67), Expect = 1.3
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Frame = +3
Query: 24 CGCCSDCGTCLLSYLCPCYLVGKDAEAVGDSCFLCGLSY---CIIPPCIGALIRKKVRE 191
C C + C T CPCYL ++ + D C CG S C + C I++ +++
Sbjct: 561 CRCKTQCNT----KQCPCYLAVRECDP--DLCLTCGASEHWDCKVVSCKNCSIQRGLKK 613
>sp|P18751|ZO71_XENLA Oocyte zinc finger protein XLCOF7.1
Length = 898
Score = 30.0 bits (66), Expect = 1.7
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 3/42 (7%)
Frame = +3
Query: 33 CSDCGTCLLSYLCPCYLVGKDAEAVGD---SCFLCGLSYCII 149
CS+CG C L+ LCP D G SC CG + +
Sbjct: 319 CSECGKCFLNQLCP------DRHQTGKKPFSCSKCGKCFAFL 354
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,891,548
Number of Sequences: 369166
Number of extensions: 456881
Number of successful extensions: 1766
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1747
length of database: 68,354,980
effective HSP length: 50
effective length of database: 59,118,230
effective search space used: 1714428670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)