Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K10
(876 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial p... 379 e-105
sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial... 379 e-105
sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial... 378 e-104
sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial... 376 e-104
sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial... 376 e-104
sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial... 375 e-104
sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial... 371 e-102
sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial... 362 e-100
sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial... 342 6e-94
sp|P05038|ATPB_RHORU ATP synthase beta chain 337 3e-92
>sp|P10719|ATPB_RAT ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 379 bits (973), Expect = e-105
Identities = 195/266 (73%), Positives = 218/266 (81%)
Frame = +1
Query: 79 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 258
+R P V R+YA +S P+ T + FD LPPILNALEV+
Sbjct: 33 LRTAPAGVHPARDYAAQSSAAPKAGTATGQIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 259 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 438
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRESRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 439 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 618
EPIDERGPIK+K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 619 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 798
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 799 GQMNEPPGARARVALTGLTVAEYFRD 876
GQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 270 GQMNEPPGARARVALTGLTVAEYFRD 295
>sp|P00829|ATPB_BOVIN ATP synthase beta chain, mitochondrial precursor
Length = 528
Score = 379 bits (972), Expect = e-105
Identities = 194/266 (72%), Positives = 219/266 (82%)
Frame = +1
Query: 79 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 258
+R P ++ R+YA ++ P+ + FD LPPILNALEV+
Sbjct: 33 LRAAPAALQPARDYAAQASPSPKAGATTGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 259 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 438
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ IRIPVGPETLGRIMNVIG
Sbjct: 90 GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIG 149
Query: 439 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 618
EPIDERGPIK+K ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 619 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 798
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 799 GQMNEPPGARARVALTGLTVAEYFRD 876
GQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 270 GQMNEPPGARARVALTGLTVAEYFRD 295
>sp|P56480|ATPB_MOUSE ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 378 bits (970), Expect = e-104
Identities = 194/266 (72%), Positives = 218/266 (81%)
Frame = +1
Query: 79 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 258
+R P V R+YA ++ P+ T + FD LPPILNALEV+
Sbjct: 33 LRAAPAGVHPARDYAAQASAAPKAGTATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 259 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 438
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRDSRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 439 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 618
EPIDERGPIK+K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFIEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 619 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 798
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 799 GQMNEPPGARARVALTGLTVAEYFRD 876
GQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 270 GQMNEPPGARARVALTGLTVAEYFRD 295
>sp|P06576|ATPB_HUMAN ATP synthase beta chain, mitochondrial precursor
Length = 529
Score = 376 bits (966), Expect = e-104
Identities = 193/266 (72%), Positives = 217/266 (81%)
Frame = +1
Query: 79 IRVLPNFVENKRNYATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPPILNALEVK 258
+R P V R+YA ++ P+ + FD LPPILNALEV+
Sbjct: 33 LRAAPTAVHPVRDYAAQTSPSPKAGAATGRIVAVIGAVVDV---QFDEGLPPILNALEVQ 89
Query: 259 GRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETLGRIMNVIG 438
GR RL+LEVAQHLGESTVRTIAMDGTEGL+RGQ+ LD G+ I+IPVGPETLGRIMNVIG
Sbjct: 90 GRETRLVLEVAQHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIKIPVGPETLGRIMNVIG 149
Query: 439 EPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGKIGLFGGAG 618
EPIDERGPIK+K + IH +AP+F++MS EQEIL TGIKVVDLLAPYA+GGKIGLFGGAG
Sbjct: 150 EPIDERGPIKTKQFAPIHAEAPEFMEMSVEQEILVTGIKVVDLLAPYAKGGKIGLFGGAG 209
Query: 619 VGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGDKSKVSLVY 798
VGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +GVI+LK SKV+LVY
Sbjct: 210 VGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESGVINLKDATSKVALVY 269
Query: 799 GQMNEPPGARARVALTGLTVAEYFRD 876
GQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 270 GQMNEPPGARARVALTGLTVAEYFRD 295
>sp|Q25117|ATPB_HEMPU ATP synthase beta chain, mitochondrial precursor
Length = 523
Score = 376 bits (966), Expect = e-104
Identities = 187/221 (84%), Positives = 204/221 (92%)
Frame = +1
Query: 214 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 393
F+ DLPPILNALEV+GRT RL+LEVAQHLGE+TVRTIAMDGTEGLIRGQ+C+D GS I I
Sbjct: 70 FEDDLPPILNALEVQGRTSRLVLEVAQHLGENTVRTIAMDGTEGLIRGQKCVDTGSPISI 129
Query: 394 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 573
PVGPETLGRI+NVIGEPIDERGPI + +S+IH +AP+FV+MS QEIL TGIKVVDLLA
Sbjct: 130 PVGPETLGRIINVIGEPIDERGPIGTDRRSAIHAEAPEFVEMSVNQEILVTGIKVVDLLA 189
Query: 574 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 753
PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI G
Sbjct: 190 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGG 249
Query: 754 VIDLKGDKSKVSLVYGQMNEPPGARARVALTGLTVAEYFRD 876
VI LK D SKV+LVYGQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 250 VISLKDDTSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 290
>sp|Q9PTY0|ATPB_CYPCA ATP synthase beta chain, mitochondrial precursor
Length = 518
Score = 375 bits (963), Expect = e-104
Identities = 187/221 (84%), Positives = 202/221 (91%)
Frame = +1
Query: 214 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 393
FD DLPPILNALEV GR RL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G+ IRI
Sbjct: 65 FDEDLPPILNALEVAGRDTRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGAPIRI 124
Query: 394 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 573
PVGPETLGRIMNVIGEPIDERGPI +K + IH +AP+F DMS EQEIL TGIKVVDLLA
Sbjct: 125 PVGPETLGRIMNVIGEPIDERGPITTKQTAPIHAEAPEFTDMSVEQEILVTGIKVVDLLA 184
Query: 574 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 753
PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI +G
Sbjct: 185 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIESG 244
Query: 754 VIDLKGDKSKVSLVYGQMNEPPGARARVALTGLTVAEYFRD 876
VI+LK SKV+LVYGQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 245 VINLKDTTSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 285
>sp|P46561|ATPB_CAEEL ATP synthase beta chain, mitochondrial precursor
Length = 538
Score = 371 bits (953), Expect = e-102
Identities = 194/274 (70%), Positives = 215/274 (78%), Gaps = 8/274 (2%)
Frame = +1
Query: 79 IRVLPNFVENKRNY--------ATESVKKPEVSTKSNXXXXXXXXXXXXXXXHFDGDLPP 234
IR+ N VE+K+ A + K +T +N FD +LPP
Sbjct: 31 IRLSSNNVESKKGIHTGVATQQAAAATKVSAKATAANASGRIVAVIGAVVDVQFDENLPP 90
Query: 235 ILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRIPVGPETL 414
ILN LEV GR+PRLILEV+QHLG++ VR IAMDGTEGL+RGQ D G I+IPVGPETL
Sbjct: 91 ILNGLEVVGRSPRLILEVSQHLGDNVVRCIAMDGTEGLVRGQPVADTGDPIKIPVGPETL 150
Query: 415 GRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLAPYARGGK 594
GRIMNVIGEPIDERGPI SK ++IH +AP+FV+MS EQEIL TGIKVVDLLAPYA+GGK
Sbjct: 151 GRIMNVIGEPIDERGPIASKNFAAIHAEAPEFVEMSVEQEILVTGIKVVDLLAPYAKGGK 210
Query: 595 IGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTGVIDLKGD 774
IGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLYHEMI GVIDLKG
Sbjct: 211 IGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYHEMIEGGVIDLKGK 270
Query: 775 KSKVSLVYGQMNEPPGARARVALTGLTVAEYFRD 876
SKVSLVYGQMNEPPGARARV LTGLTVAEYFRD
Sbjct: 271 NSKVSLVYGQMNEPPGARARVCLTGLTVAEYFRD 304
>sp|Q05825|ATPB_DROME ATP synthase beta chain, mitochondrial precursor
Length = 505
Score = 362 bits (930), Expect = e-100
Identities = 182/221 (82%), Positives = 199/221 (90%)
Frame = +1
Query: 214 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 393
FD +LPPILNALEV R+PRL+LEVAQHLGE+TVRTIAMDGTEGL+RGQ+ LD G IRI
Sbjct: 52 FDDNLPPILNALEVDNRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQKVLDTGYPIRI 111
Query: 394 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 573
PVG ETLGRI+NVIGEPIDERGPI + ++IH +AP+FV MS EQEIL TGIKVVDLLA
Sbjct: 112 PVGAETLGRIINVIGEPIDERGPIDTDKTAAIHAEAPEFVQMSVEQEILVTGIKVVDLLA 171
Query: 574 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 753
PYA+GGKIGLFGGAGVGKTVLIMELINN+A+AHGGYSVFAGVGERTREGNDLY+EMI G
Sbjct: 172 PYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGERTREGNDLYNEMIEGG 231
Query: 754 VIDLKGDKSKVSLVYGQMNEPPGARARVALTGLTVAEYFRD 876
VI LK SKV+LVYGQMNEPPGARARVALTGLTVAEYFRD
Sbjct: 232 VISLKDKTSKVALVYGQMNEPPGARARVALTGLTVAEYFRD 272
>sp|P00830|ATPB_YEAST ATP synthase beta chain, mitochondrial precursor
Length = 511
Score = 342 bits (878), Expect = 6e-94
Identities = 173/223 (77%), Positives = 195/223 (87%), Gaps = 1/223 (0%)
Frame = +1
Query: 211 HFD-GDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSI 387
HF+ +LP ILNALE+K +L+LEVAQHLGE+TVRTIAMDGTEGL+RG++ LD G I
Sbjct: 57 HFEQSELPAILNALEIKTPQGKLVLEVAQHLGENTVRTIAMDGTEGLVRGEKVLDTGGPI 116
Query: 388 RIPVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDL 567
+PVG ETLGRI+NVIGEPIDERGPIKSK++ IH D P F + ST EILETGIKVVDL
Sbjct: 117 SVPVGRETLGRIINVIGEPIDERGPIKSKLRKPIHADPPSFAEQSTSAEILETGIKVVDL 176
Query: 568 LAPYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMIT 747
LAPYARGGKIGLFGGAGVGKTV I ELINNIA+AHGG+SVFAGVGERTREGNDLY EM
Sbjct: 177 LAPYARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGFSVFAGVGERTREGNDLYREMKE 236
Query: 748 TGVIDLKGDKSKVSLVYGQMNEPPGARARVALTGLTVAEYFRD 876
TGVI+L+G+ SKV+LV+GQMNEPPGARARVALTGLT+AEYFRD
Sbjct: 237 TGVINLEGE-SKVALVFGQMNEPPGARARVALTGLTIAEYFRD 278
>sp|P05038|ATPB_RHORU ATP synthase beta chain
Length = 474
Score = 337 bits (864), Expect = 3e-92
Identities = 162/221 (73%), Positives = 186/221 (84%)
Frame = +1
Query: 214 FDGDLPPILNALEVKGRTPRLILEVAQHLGESTVRTIAMDGTEGLIRGQECLDVGSSIRI 393
F+G+LP IL+ALE RL+LEVAQHLGES VRTIAMD TEGL+RGQ+ G I +
Sbjct: 21 FEGELPSILSALETDNHGNRLVLEVAQHLGESVVRTIAMDSTEGLVRGQQVTSTGGPITV 80
Query: 394 PVGPETLGRIMNVIGEPIDERGPIKSKMQSSIHQDAPDFVDMSTEQEILETGIKVVDLLA 573
PVGP+ LGRIMNVIGEP+DERGP+ + + IH+ AP F + +TE EIL TGIKV+DL+A
Sbjct: 81 PVGPQVLGRIMNVIGEPVDERGPVVTAQRYPIHRQAPTFAEQATETEILVTGIKVIDLIA 140
Query: 574 PYARGGKIGLFGGAGVGKTVLIMELINNIARAHGGYSVFAGVGERTREGNDLYHEMITTG 753
PY +GGK+GLFGGAGVGKTVLI ELINN+A+ HGGYSVFAGVGERTREGNDLYHEMI G
Sbjct: 141 PYTKGGKVGLFGGAGVGKTVLIQELINNVAKGHGGYSVFAGVGERTREGNDLYHEMIDAG 200
Query: 754 VIDLKGDKSKVSLVYGQMNEPPGARARVALTGLTVAEYFRD 876
+IDL+GDKSKV+LVYGQMNEPPGARARVAL GLT AEYFRD
Sbjct: 201 IIDLEGDKSKVALVYGQMNEPPGARARVALAGLTQAEYFRD 241
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.317 0.137 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,775,635
Number of Sequences: 369166
Number of extensions: 1797307
Number of successful extensions: 5810
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5481
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8694177530
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)