Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_K04
(688 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P46976|GLYG_HUMAN Glycogenin-1 296 3e-80
sp|P13280|GLYG_RABIT Glycogenin-1 292 5e-79
sp|Q9R062|GLYG_MOUSE Glycogenin-1 292 6e-79
sp|O08730|GLYG_RAT Glycogenin-1 291 8e-79
sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2) 272 7e-73
sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2 124 2e-28
sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1 84 5e-16
sp|Q9Y761|GNT1A_KLULA Glucose N-acetyltransferase 1-A (N-ac... 42 0.002
sp|Q6CT96|GNT1B_KLULA Glucose N-acetyltransferase 1-B (N-ac... 38 0.022
sp|Q09680|YA0C_SCHPO Hypothetical protein C5H10.12c in chro... 36 0.11
>sp|P46976|GLYG_HUMAN Glycogenin-1
Length = 350
Score = 296 bits (758), Expect = 3e-80
Identities = 137/217 (63%), Positives = 171/217 (78%)
Frame = +1
Query: 1 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 180
YA GAL L SLK T + LV++ T +S++MR VL VF+ + MV+VLDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTTRRLVVLATPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTL 74
Query: 181 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 360
++RPELG+T TKLHCW L QYSKCVFMDADTLV+ NIDDLF+REELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFDREELSAAPDPGWPDCFNS 134
Query: 361 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 540
GVFVY+PS++TY +LL A ++GSFDGGDQG+LN FFS+W+T DI+ HLPF+YN S +
Sbjct: 135 GVFVYQPSVETYNQLLHLASEQGSFDGGDQGILNTFFSSWATTDIRKHLPFIYNLSSISI 194
Query: 541 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV 651
YSYLPA+ F A KV+HF+G KPW++T+D T +V
Sbjct: 195 YSYLPAFKVFGASAKVVHFLGRVKPWNYTYDPKTKSV 231
>sp|P13280|GLYG_RABIT Glycogenin-1
Length = 333
Score = 292 bits (748), Expect = 5e-79
Identities = 134/217 (61%), Positives = 169/217 (77%)
Frame = +1
Query: 1 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 180
YA GAL L SLK T + L ++ T +S+ MR L VF+ + V++LDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTSRRLAVLTTPQVSDTMRKALEIVFDEVITVDILDSGDSAHLTL 74
Query: 181 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 360
++RPELG+T TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGVTLTKLHCWSLTQYSKCVFMDADTLVLANIDDLFEREELSAAPDPGWPDCFNS 134
Query: 361 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 540
GVFVY+PS++TY +LL A ++GSFDGGDQGLLN FF++W+T DI+ HLPF+YN S +
Sbjct: 135 GVFVYQPSVETYNQLLHVASEQGSFDGGDQGLLNTFFNSWATTDIRKHLPFIYNLSSISI 194
Query: 541 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV 651
YSYLPA+ F A+ KV+HF+G KPW++T+D+ T +V
Sbjct: 195 YSYLPAFKAFGANAKVVHFLGQTKPWNYTYDTKTKSV 231
>sp|Q9R062|GLYG_MOUSE Glycogenin-1
Length = 333
Score = 292 bits (747), Expect = 6e-79
Identities = 137/217 (63%), Positives = 169/217 (77%)
Frame = +1
Query: 1 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 180
YA GAL L SLK T + +V++ + +S++MR VL VF+ + MV+VLDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTTRRMVVLTSPQVSDSMRKVLETVFDDVIMVDVLDSGDSAHLTL 74
Query: 181 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 360
++RPELGIT TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNS 134
Query: 361 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 540
GVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI HLPFVYN S +
Sbjct: 135 GVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNLSSISI 194
Query: 541 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV 651
YSYLPA+ F + KV+HF+G KPW++T++ T +V
Sbjct: 195 YSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSV 231
>sp|O08730|GLYG_RAT Glycogenin-1
Length = 333
Score = 291 bits (746), Expect = 8e-79
Identities = 137/217 (63%), Positives = 168/217 (77%)
Frame = +1
Query: 1 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 180
YA GAL L SLK T + V++ + +S++MR VL VF+ + MV+VLDS D +L L
Sbjct: 15 YAKGALVLGSSLKQHRTTRRTVVLASPQVSDSMRKVLETVFDEVIMVDVLDSGDSAHLTL 74
Query: 181 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 360
++RPELGIT TKLHCW L QYSKCVFMDADTLV+ NIDDLFEREELSAAPDPGWPDCFNS
Sbjct: 75 MKRPELGITLTKLHCWSLTQYSKCVFMDADTLVLSNIDDLFEREELSAAPDPGWPDCFNS 134
Query: 361 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 540
GVFVY+PSI+TY +LL A ++GSFDGGDQGLLN +FS W+T DI HLPFVYN S +
Sbjct: 135 GVFVYQPSIETYNQLLHLASEQGSFDGGDQGLLNTYFSGWATTDITKHLPFVYNLSSLSI 194
Query: 541 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTV 651
YSYLPA+ F + KV+HF+G KPW++T++ T +V
Sbjct: 195 YSYLPAFKAFGKNAKVVHFLGRTKPWNYTYNPQTKSV 231
>sp|O15488|GLYG2_HUMAN Glycogenin-2 (GN-2) (GN2)
Length = 501
Score = 272 bits (695), Expect = 7e-73
Identities = 122/218 (55%), Positives = 162/218 (74%)
Frame = +1
Query: 1 YALGALTLAMSLKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVINLGL 180
Y GAL L SL+ ++LV++IT +S +R +LS+VF+ + VN++DS D I+L
Sbjct: 48 YCQGALVLGQSLRRHRLTRKLVVLITPQVSSLLRVILSKVFDEVIEVNLIDSADYIHLAF 107
Query: 181 LERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFEREELSAAPDPGWPDCFNS 360
L+RPELG+T TKLHCW L YSKCVF+DADTLV+ N+D+LF+R E SAAPDPGWPDCFNS
Sbjct: 108 LKRPELGLTLTKLHCWTLTHYSKCVFLDADTLVLSNVDELFDRGEFSAAPDPGWPDCFNS 167
Query: 361 GVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFSNWSTKDIKHHLPFVYNCVSQAF 540
GVFV++PS+ T+ LLQ A++ GSFDG DQGLLN FF NWST DI HLPF+YN S
Sbjct: 168 GVFVFQPSLHTHKLLLQHAMEHGSFDGADQGLLNSFFRNWSTTDIHKHLPFIYNLSSNTM 227
Query: 541 YSYLPAYTHFRADIKVLHFIGPHKPWHHTFDSDTGTVI 654
Y+Y PA+ F + KV+HF+G KPW++ ++ +G+V+
Sbjct: 228 YTYSPAFKQFGSSAKVVHFLGSMKPWNYKYNPQSGSVL 265
>sp|P47011|GLG2_YEAST Glycogen synthesis initiator protein GLG2
Length = 380
Score = 124 bits (311), Expect = 2e-28
Identities = 87/253 (34%), Positives = 122/253 (48%), Gaps = 40/253 (15%)
Frame = +1
Query: 1 YALGALTLAMSL----KHSGTQKELVIMIT-------DNISEAMRNVLSQVFNHIEMVNV 147
Y GALTLA L KH+ + E+ + + D ++ +F I ++
Sbjct: 16 YLPGALTLAYQLQKLLKHAVVEDEITLCLLIEKKLFGDEFKPQEIALIRSLFKEIIIIEP 75
Query: 148 LDSNDV------INLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE- 306
L + NL LL+RPEL T K W LVQ+ + +F+DADTL + + FE
Sbjct: 76 LKDQEKSIEKNKANLELLKRPELSHTLLKARLWELVQFDQVLFLDADTLPLNK--EFFEI 133
Query: 307 --------REELSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLN 462
R +++A PD GWPD FN+GV + P +D L F I S DG DQG+ N
Sbjct: 134 LRLYPEQTRFQIAAVPDIGWPDMFNTGVLLLIPDLDMATSLQDFLIKTVSIDGADQGIFN 193
Query: 463 MFFS---NWSTKDIKH---------HLPFVYNCVSQAF-YSYLPAYTHFRADIKVLHFIG 603
FF+ N+S K++ H LPF YN + Y PA F+ I+++HFIG
Sbjct: 194 QFFNPICNYS-KEVLHKVSPLMEWIRLPFTYNVTMPNYGYQSSPAMNFFQQHIRLIHFIG 252
Query: 604 PHKPW-HHTFDSD 639
KPW +T D D
Sbjct: 253 TFKPWSRNTTDYD 265
>sp|P36143|GLG1_YEAST Glycogen synthesis initiator protein GLG1
Length = 480
Score = 83.6 bits (205), Expect = 5e-16
Identities = 45/112 (40%), Positives = 59/112 (52%), Gaps = 10/112 (8%)
Frame = +1
Query: 313 ELSAAPDPGWPDCFNSGVFVYKPSIDTYVELLQFAIDKGSFDGGDQGLLNMFFS-NWSTK 489
++ A D GWPD FNSGV + P DT L + + S DG DQG+LN FF+ N T
Sbjct: 8 QVGAIADIGWPDMFNSGVMMLIPDADTASVLQNYIFENTSIDGSDQGILNQFFNQNCCTD 67
Query: 490 DIKH--------HLPFVYN-CVSQAFYSYLPAYTHFRADIKVLHFIGPHKPW 618
++ L F YN + Y PA +F+ IK++HFIG HKPW
Sbjct: 68 ELVKDSFSREWVQLSFTYNVTIPNLGYQSSPAMNYFKPSIKLIHFIGKHKPW 119
>sp|Q9Y761|GNT1A_KLULA Glucose N-acetyltransferase 1-A (N-acetylglucosaminyltransferase A)
Length = 460
Score = 42.0 bits (97), Expect = 0.002
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 5/95 (5%)
Frame = +1
Query: 34 LKHSGTQKELVIMITDNISEAMRNVLSQVFNHIEMVNVLDSNDVI----NLGLLERPELG 201
L SGTQ +LV+++ ++E + V + + N ++ N+ L +
Sbjct: 118 LHESGTQAKLVMLVAKELTELPED--DSVTRMLAQFKEISDNCIVKPVENIVLSQGSAQW 175
Query: 202 IT-FTKLHCWRLVQYSKCVFMDADTLVIQNIDDLF 303
+T TKL + +V+Y + V+ D+D+++ +N+D+LF
Sbjct: 176 MTSMTKLRVFGMVEYKRIVYFDSDSIITRNMDELF 210
>sp|Q6CT96|GNT1B_KLULA Glucose N-acetyltransferase 1-B (N-acetylglucosaminyltransferase B)
Length = 453
Score = 38.1 bits (87), Expect = 0.022
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 12/113 (10%)
Frame = +1
Query: 1 YALGALTLAMSLKHSGTQKELVIMITDNIS---------EAMRNVLSQVFNHI---EMVN 144
Y L L SG++ +L+ ++TD + EA+ N + V + + E+ +
Sbjct: 96 YLCNTLIQFRKLNDSGSKAKLLALVTDTLVNKSKENKEVEALLNKIKSVSDRVAVTEVGS 155
Query: 145 VLDSNDVINLGLLERPELGITFTKLHCWRLVQYSKCVFMDADTLVIQNIDDLF 303
V+ ND + TKL + L Y + ++MD D ++ +D+LF
Sbjct: 156 VIQPND--------HTPWSKSLTKLAIFNLTDYERIIYMDNDAIIHDKMDELF 200
>sp|Q09680|YA0C_SCHPO Hypothetical protein C5H10.12c in chromosome I
Length = 371
Score = 35.8 bits (81), Expect = 0.11
Identities = 13/33 (39%), Positives = 24/33 (72%)
Frame = +1
Query: 208 FTKLHCWRLVQYSKCVFMDADTLVIQNIDDLFE 306
F+KL + +Q+ K +D+D L+++NIDD+F+
Sbjct: 161 FSKLRIFEQIQFDKICVIDSDILIMKNIDDIFD 193
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,789,364
Number of Sequences: 369166
Number of extensions: 1582710
Number of successful extensions: 3969
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3966
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 5879188535
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)