Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J23
(545 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin) 286 2e-77
sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin) 286 2e-77
sp|P30883|TBB4_XENLA Tubulin beta-4 chain 286 2e-77
sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin) 286 2e-77
sp|P02554|TBB_PIG Tubulin beta chain 286 3e-77
sp|P68372|TBBX_MOUSE Tubulin beta-? chain >gi|55977480|sp|P... 286 3e-77
sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin cla... 285 5e-77
sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin cla... 285 5e-77
sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin) 284 9e-77
sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain >gi|56754798|sp|P... 284 9e-77
>sp|Q91240|TBB_PSEAM Tubulin beta chain (Beta tubulin)
Length = 445
Score = 286 bits (733), Expect = 2e-77
Identities = 140/148 (94%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMSSTFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSSTFIGNSTAIQELFKRMSEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P11833|TBB_PARLI Tubulin beta chain (Beta tubulin)
Length = 447
Score = 286 bits (732), Expect = 2e-77
Identities = 139/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P30883|TBB4_XENLA Tubulin beta-4 chain
Length = 445
Score = 286 bits (732), Expect = 2e-77
Identities = 139/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P18700|TBB_STRPU Tubulin beta chain (Beta tubulin)
Length = 292
Score = 286 bits (732), Expect = 2e-77
Identities = 139/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 128 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFV 187
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 188 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 247
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 248 MDEMEFTEAESNMNDLVSEYQQYQDATA 275
>sp|P02554|TBB_PIG Tubulin beta chain
Length = 445
Score = 286 bits (731), Expect = 3e-77
Identities = 138/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P68372|TBBX_MOUSE Tubulin beta-? chain
sp|P68371|TBBX_HUMAN Tubulin beta-? chain (Tubulin beta-2 chain)
Length = 445
Score = 286 bits (731), Expect = 3e-77
Identities = 138/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P32882|TBB2_CHICK Tubulin beta-2 chain (Beta-tubulin class-II)
Length = 445
Score = 285 bits (729), Expect = 5e-77
Identities = 138/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|P09203|TBB1_CHICK Tubulin beta-1 chain (Beta-tubulin class-I)
Length = 445
Score = 285 bits (729), Expect = 5e-77
Identities = 138/148 (93%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FD+KNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQMFDSKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
>sp|Q24560|TBB1_DROME Tubulin beta-1 chain (Beta-1 tubulin)
Length = 447
Score = 284 bits (727), Expect = 9e-77
Identities = 137/148 (92%), Positives = 144/148 (97%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLN+QNKNSS FV
Sbjct: 283 ALTVPELTQQMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKMS+TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQ+ATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQEATA 430
>sp|Q7JJU6|TBB2_PANTR Tubulin beta-2 chain
sp|P69895|TBB2_MACMU Tubulin beta-2 chain
sp|P07437|TBB2_HUMAN Tubulin beta-2 chain
sp|P09244|TBB7_CHICK Tubulin beta-7 chain (Tubulin beta 4')
sp|P99024|TBB5_MOUSE Tubulin beta-5 chain
sp|P69897|TBB5_RAT Tubulin beta-5 chain
sp|P69893|TBB1_CRIGR Tubulin beta-1 chain (Beta-tubulin isotype I) (Class I beta
tubulin)
Length = 444
Score = 284 bits (727), Expect = 9e-77
Identities = 137/148 (92%), Positives = 143/148 (96%)
Frame = +2
Query: 2 ALTVPELTQQIFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNVQNKNSSDFV 181
ALTVPELTQQ+FDAKNMMAACDPRHGRYLTVAA+FRGRMSMKEVDEQMLNVQNKNSS FV
Sbjct: 283 ALTVPELTQQVFDAKNMMAACDPRHGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFV 342
Query: 182 EWIPNNVKTAVCDIPPRGLKMSSTFIGNRTAIQELFKRVSEQFAAMFKREAFLHWYTGEG 361
EWIPNNVKTAVCDIPPRGLKM+ TFIGN TAIQELFKR+SEQF AMF+R+AFLHWYTGEG
Sbjct: 343 EWIPNNVKTAVCDIPPRGLKMAVTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEG 402
Query: 362 MDEMEFTEAESKMNDLVSEYQQYQDATA 445
MDEMEFTEAES MNDLVSEYQQYQDATA
Sbjct: 403 MDEMEFTEAESNMNDLVSEYQQYQDATA 430
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,142,208
Number of Sequences: 369166
Number of extensions: 941594
Number of successful extensions: 3370
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3240
length of database: 68,354,980
effective HSP length: 104
effective length of database: 49,142,540
effective search space used: 3783975580
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)