Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J21
(861 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolo... 219 8e-57
sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolo... 218 2e-56
sp|P41889|CUT9_SCHPO 20S cyclosome/APC complex protein cut9... 144 2e-34
sp|P09798|CDC16_YEAST Anaphase promoting complex subunit CD... 127 3e-29
sp|O94556|CUT23_SCHPO 20S cyclosome/APC complex protein cut... 56 1e-07
sp|Q13099|IFT88_HUMAN Intraflagellar transport 88 homolog (... 55 2e-07
sp|P38042|CDC27_YEAST Anaphase promoting complex subunit CD... 55 3e-07
sp|Q58208|Y798_METJA Hypothetical protein MJ0798 53 1e-06
sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--pepti... 53 1e-06
sp|Q8RVB2|SPY_LYCES Probable UDP-N-acetylglucosamine--pepti... 51 5e-06
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog (Anaphase promoting complex
subunit 6) (APC6) (Cyclosome subunit 6)
Length = 620
Score = 219 bits (558), Expect = 8e-57
Identities = 105/282 (37%), Positives = 176/282 (62%), Gaps = 2/282 (0%)
Frame = +1
Query: 16 LDEHYSNILNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFS 195
L E+ +++ A R+Y N FK Y+LT ++++ DP + NC+ +H+ L EL NELF
Sbjct: 227 LQENLDVVVSLAERHYYNCDFKMCYKLTSTVMEKDPFHANCLPVHIGTLVELNKANELFY 286
Query: 196 FASGLIDKYPDKKESWYAIGCYSLVTGNYNLALQQFI-KATEIEKFFGYAWLAIGHTYSI 372
+ L+D YP SW+A+GCY L+ G+ N ++++ KAT +EK +G AW+A GH++++
Sbjct: 287 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 346
Query: 373 QKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWN 552
+ + DQA AAY +A Q ++G H+P+LYI LEY L NN+ L+ + +A+ + DP+ +
Sbjct: 347 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDPFVIH 406
Query: 553 EKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLS-EFWEPLFNNIGHCFLKLGDYDKSLD 729
E G ++F++ + + K+FL+A E K N ++ + WEPL NN+GH KL Y ++LD
Sbjct: 407 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 466
Query: 730 FFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGI 855
+ R+AL P N +T +++ ++ G+ A +Y LG+
Sbjct: 467 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 508
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog (CDC16Hs) (Anaphase promoting
complex subunit 6) (APC6) (Cyclosome subunit 6)
Length = 620
Score = 218 bits (554), Expect = 2e-56
Identities = 104/282 (36%), Positives = 175/282 (62%), Gaps = 2/282 (0%)
Frame = +1
Query: 16 LDEHYSNILNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFS 195
L E+ +++ A R+Y N FK Y+LT +++ DP + +C+ +H+ L EL NELF
Sbjct: 227 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFY 286
Query: 196 FASGLIDKYPDKKESWYAIGCYSLVTGNYNLALQQFI-KATEIEKFFGYAWLAIGHTYSI 372
+ L+D YP SW+A+GCY L+ G+ N ++++ KAT +EK +G AW+A GH++++
Sbjct: 287 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 346
Query: 373 QKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWN 552
+ + DQA AAY +A Q ++G H+P+LYI LEY L NN+ L+ + +A+ + DP+ +
Sbjct: 347 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 406
Query: 553 EKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLS-EFWEPLFNNIGHCFLKLGDYDKSLD 729
E G ++F++ + + K+FL+A E K N ++ + WEPL NN+GH KL Y ++LD
Sbjct: 407 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 466
Query: 730 FFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGI 855
+ R+AL P N +T +++ ++ G+ A +Y LG+
Sbjct: 467 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 508
>sp|P41889|CUT9_SCHPO 20S cyclosome/APC complex protein cut9 (Cell untimely torn protein 9)
Length = 671
Score = 144 bits (364), Expect = 2e-34
Identities = 82/283 (28%), Positives = 147/283 (51%), Gaps = 1/283 (0%)
Frame = +1
Query: 10 NILDEHYSNILNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNEL 189
N L++ +L A + ++F +T IL+ DP+N + LH+A L E N+L
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
Query: 190 FSFASGLIDKYPDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYS 369
+ ++ L+D++P+K +W A+G Y L + A + F K++ ++ FG AW+ H+++
Sbjct: 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 370 IQKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFW 549
I+ + DQA +AY +A + +G+H+P L++ +++ N L+ YLQ + + +DP
Sbjct: 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
Query: 550 NEKGYLSFKHKNYSDSLKFFLNA-YEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSL 726
NE G ++F + ++ F NA KK + N + W + N+GH + KL YD ++
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAI 536
Query: 727 DFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGI 855
D + L N+ ++AL Y K A +L L I
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579
>sp|P09798|CDC16_YEAST Anaphase promoting complex subunit CDC16 (Cell division control
protein 16)
Length = 840
Score = 127 bits (320), Expect = 3e-29
Identities = 70/263 (26%), Positives = 132/263 (50%)
Frame = +1
Query: 61 YNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFASGLIDKYPDKKES 240
Y KF + EL +++L++D N N + ++ L EL N+LF + L + +P +
Sbjct: 474 YTQCKFNECLELCETVLENDEFNTNILPAYIGCLYELSNKNKLFLLSHRLAETFPKSAIT 533
Query: 241 WYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQARAAYCSANQ 420
W+++ Y + + A + + K++ ++ F AWL HTY+++ + DQA AY +A++
Sbjct: 534 WFSVATYYMSLDRISEAQKYYSKSSILDPSFAAAWLGFAHTYALEGEQDQALTAYSTASR 593
Query: 421 AIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSDSL 600
G H+P L++ +++ N+ L+ +Y A + +DP NE G + FK + +
Sbjct: 594 FFPGMHLPKLFLGMQFMAMNSLNLAESYFVLAYDICPNDPLVLNEMGVMYFKKNEFVKAK 653
Query: 601 KFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLN 780
K+ A E K + + S + N+GH + KL + + ++ FR L K N
Sbjct: 654 KYLKKALEVVK-DLDPSSRTTISIQLNLGHTYRKLNENEIAIKCFRCVLEKNDKNSEIHC 712
Query: 781 SLALAYARKGDVSEAQNYLERVL 849
SL Y + + +A ++L + L
Sbjct: 713 SLGYLYLKTKKLQKAIDHLHKSL 735
Score = 33.9 bits (76), Expect = 0.60
Identities = 15/58 (25%), Positives = 31/58 (53%)
Frame = +1
Query: 682 IGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGI 855
+G F+ + + + +F A PN+P LN + + Y +K + +A+ YL++ L +
Sbjct: 605 LGMQFMAMNSLNLAESYFVLAYDICPNDPLVLNEMGVMYFKKNEFVKAKKYLKKALEV 662
>sp|O94556|CUT23_SCHPO 20S cyclosome/APC complex protein cut23 (Anaphase promoting factor
component 8) (Cell untimely torn protein 23)
Length = 565
Score = 55.8 bits (133), Expect = 1e-07
Identities = 58/273 (21%), Positives = 117/273 (42%), Gaps = 7/273 (2%)
Frame = +1
Query: 61 YNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFA--SGLIDKYPDKK 234
Y++ F +A L ++IL +DP+ + + + +L L+ ++L A + IDK+ +
Sbjct: 281 YDSRDFDEAESLFENILTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKF--RP 338
Query: 235 ESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQARAAYCSA 414
E+ IG Y + + A+ F +A ++ + + AW +GH Y K + A +Y A
Sbjct: 339 ETCSIIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLA 398
Query: 415 NQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSD 594
R + + Y + + ++ Y Q A + +D W G K +
Sbjct: 399 VDVNRKDYRAWYGLGQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCYEKIDRPQE 458
Query: 595 SLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPN--NP 768
++K + A + + L +G+ + +L D + + +++ + + +P
Sbjct: 459 AIKSYKRALLGSQTNSSILV--------RLGNLYEELQDLNSAASMYKQCIKTEETEISP 510
Query: 769 TTLNS---LALAYARKGDVSEAQNYLERVLGID 858
T+ + LA K + EA+ YL VL D
Sbjct: 511 ETIKARIWLARWELGKKNYREAELYLSEVLNGD 543
>sp|Q13099|IFT88_HUMAN Intraflagellar transport 88 homolog (Tetratricopeptide repeat protein
10) (TPR repeat protein 10) (Recessive polycystic kidney
disease protein Tg737 homolog)
Length = 824
Score = 55.5 bits (132), Expect = 2e-07
Identities = 66/303 (21%), Positives = 115/303 (37%), Gaps = 34/303 (11%)
Frame = +1
Query: 40 LNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTEL-KLNNELFSFASGLI- 213
+N A Y + +A E+ K + K D + +++ L + K + S+A +
Sbjct: 419 INKAVTYLRQKDYNQAVEILKVLEKKDNRVKSAAATNLSALYYMGKDFAQASSYADIAVN 478
Query: 214 -DKY-----PDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQ 375
D+Y +K + +A G Y Y AL+ TE A IG TY
Sbjct: 479 SDRYNPAALTNKGNTVFANGDYEKAAEFYKEALRNDSSCTE-------ALYNIGLTYEKL 531
Query: 376 KKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNE 555
+ D+A + + +R S L IA Y L N +I +L + + V DP ++
Sbjct: 532 NRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDPQVLSK 591
Query: 556 KGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSL---------SEFWEPLFN---------- 678
G L + + S + +++ +Y + ++FWE
Sbjct: 592 LGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERASLIQP 651
Query: 679 -------NIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYL 837
+ CF + G+Y K+LD ++ K P N L L G + +AQ Y
Sbjct: 652 TQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLG-LKDAQEYA 710
Query: 838 ERV 846
++
Sbjct: 711 RKL 713
Score = 37.4 bits (85), Expect = 0.054
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +1
Query: 454 IALEYSLDNNTCLSINYLQEAMK--VGSHDPYFWNEKGYLSFKHKNYSDSLKFFLNAYEA 627
+A +YS++ ++N Q +K + S+ G + K +NYS ++KF+ A +
Sbjct: 203 LASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQ 262
Query: 628 KKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARK 807
+ + + NIG F++ G Y +++ + + PN N L + Y
Sbjct: 263 VPSVNKQMRI---KIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKAGYN-LTICYFAI 318
Query: 808 GDVSEAQNYLERVLGI 855
GD + + ++++ +
Sbjct: 319 GDREKMKKAFQKLITV 334
>sp|P38042|CDC27_YEAST Anaphase promoting complex subunit CDC27 (Cell division control
protein 27) (Anaphase promoting complex subunit 3)
Length = 758
Score = 54.7 bits (130), Expect = 3e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Frame = +1
Query: 193 SFASGLIDKYPDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSI 372
+ A+GL+D P+K E+W IG + +++ A++ F KAT+++ F YA+ GH +S
Sbjct: 527 NLANGLMDTMPNKPETWCCIGNLLSLQKDHDAAIKAFEKATQLDPNFAYAYTLQGHEHSS 586
Query: 373 QKKSDQARAAYCSA 414
SD A+ Y A
Sbjct: 587 NDSSDSAKTCYRKA 600
>sp|Q58208|Y798_METJA Hypothetical protein MJ0798
Length = 334
Score = 53.1 bits (126), Expect = 1e-06
Identities = 39/189 (20%), Positives = 88/189 (46%)
Frame = +1
Query: 283 NLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQARAAYCSANQAIRGSHIPLLYIAL 462
+LA++ F KA+E ++ A +G +Y + + + Y + + + L
Sbjct: 152 DLAIKYFEKASEKDRNNYKALFGLGKSYYLMSDNKNS-IKYFEKVLELNPNDVEALEYLG 210
Query: 463 EYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSDSLKFFLNAYEAKKNEF 642
E + + +INY ++A+++ D + + FK K Y +LK+F A + N F
Sbjct: 211 ELYYEEDCEKAINYFKKALELKPDDIDLILKVAFTYFKLKKYKHALKYFEKALKLNPNVF 270
Query: 643 NSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSE 822
E ++ ++G ++ LG+ +K+++ F K + +AL Y G++ +
Sbjct: 271 E-----LEQIYESMGRIYIYLGEDEKAIECFEKLKEINLYHYEIYEIIALTYEEVGNIEK 325
Query: 823 AQNYLERVL 849
A+ + ++++
Sbjct: 326 AKEFYKKLV 334
Score = 38.5 bits (88), Expect = 0.024
Identities = 26/99 (26%), Positives = 43/99 (43%)
Frame = +1
Query: 553 EKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDF 732
+KGY K ++K+F A E +N + +L +G + + D S+ +
Sbjct: 140 KKGYALLKLYKRDLAIKYFEKASEKDRNNYKALF--------GLGKSYYLMSDNKNSIKY 191
Query: 733 FRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVL 849
F K L PN+ L L Y + D +A NY ++ L
Sbjct: 192 FEKVLELNPNDVEALEYLGELYYEE-DCEKAINYFKKAL 229
Score = 37.7 bits (86), Expect = 0.041
Identities = 25/99 (25%), Positives = 45/99 (45%)
Frame = +1
Query: 562 YLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRK 741
YL +KN S+K+F E N+ +L E + D +K++++F+K
Sbjct: 180 YLMSDNKN---SIKYFEKVLELNPNDVEALEYLGELYYEE---------DCEKAINYFKK 227
Query: 742 ALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGID 858
AL KP++ + +A Y + A Y E+ L ++
Sbjct: 228 ALELKPDDIDLILKVAFTYFKLKKYKHALKYFEKALKLN 266
>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY (PhSPY)
Length = 932
Score = 52.8 bits (125), Expect = 1e-06
Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 18/282 (6%)
Frame = +1
Query: 58 YYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFASGLIDKYPD--K 231
Y + + +A E + LK DP +LT++ + +L + I KY + K
Sbjct: 126 YKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYEAIK 185
Query: 232 KESWYAIGCYSLVTG-----NYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQAR 396
+S YA Y+L Y++AL + KA + A+ +G Y + + A
Sbjct: 186 IDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAI 245
Query: 397 AAY-----CSANQAIRGSH--IPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNE 555
A Y S N I ++ I L + + L+ + + Y ++A+ Y W+
Sbjct: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY------YNWHY 299
Query: 556 KGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEP----LFNNIGHCFLKLGDYDKS 723
+ Y + LKF + F L+ + P NN+G + + DK+
Sbjct: 300 ADAMYNLGVAYGEMLKFDMAIV------FYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
Query: 724 LDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVL 849
++ ++ AL KPN +LN+L + Y +G + A + +E+ +
Sbjct: 354 VECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Score = 39.7 bits (91), Expect = 0.011
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 5/184 (2%)
Frame = +1
Query: 319 IEKFFGYAWLAIGHTYSIQKKSDQARAAYCSANQAIR---GSHIPLLYIALEYSLDNNTC 489
++K G IG +Q ++ R A+ S +AI+ + L + + Y +
Sbjct: 75 LQKDSGSIESLIGKGICLQMQN-MGRLAFESFAEAIKLDPQNACALTHCGILYKDEGRLV 133
Query: 490 LSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSDSLKFFLNAYEA--KKNEFNSLSEFW 663
+ Q+A+K DP + L+ + SLK N+ E K E + +
Sbjct: 134 EAAESYQKALKA---DPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHY 190
Query: 664 EPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLER 843
P + N+G + ++ YD +L+ + KA ++P ++ + Y +GD+ A ER
Sbjct: 191 APAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
Query: 844 VLGI 855
L +
Sbjct: 251 CLAV 254
>sp|Q8RVB2|SPY_LYCES Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY (LeSPY)
Length = 931
Score = 50.8 bits (120), Expect = 5e-06
Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 18/282 (6%)
Frame = +1
Query: 58 YYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFASGLIDKYPD--K 231
Y + + +A E + LK DP +LT++ + +L I KY + K
Sbjct: 126 YKDEGRLVEAAESYEKALKADPSYTPAAECLAIVLTDIGTSLKLAGNTQEGIQKYYEAIK 185
Query: 232 KESWYAIGCYSLVTG-----NYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQAR 396
+S YA Y+L Y++AL + KA + A+ +G + + + A
Sbjct: 186 IDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAALERPMYAEAYCNMGVIFKNRGDLESAI 245
Query: 397 AAY-----CSANQAIRGSH--IPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNE 555
A Y S N I ++ I L + + L+ + + Y ++A+ Y W+
Sbjct: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALC------YNWHY 299
Query: 556 KGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEP----LFNNIGHCFLKLGDYDKS 723
+ Y + LKF + F L+ + P NN+G + + DK+
Sbjct: 300 ADAMYNLGVAYGEMLKFDMAIV------FYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
Query: 724 LDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVL 849
++ ++ AL KPN +LN+L + Y +G + A + +E+ +
Sbjct: 354 VECYQLALSIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Score = 37.4 bits (85), Expect = 0.054
Identities = 34/159 (21%), Positives = 68/159 (42%), Gaps = 5/159 (3%)
Frame = +1
Query: 394 RAAYCSANQAIR---GSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGY 564
R A+ S ++AI+ + L + + Y + + ++A+K DP +
Sbjct: 99 RLAFESFSEAIKVDPQNACALTHCGILYKDEGRLVEAAESYEKALKA---DPSYTPAAEC 155
Query: 565 LSFKHKNYSDSLKFFLNAYEA--KKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFR 738
L+ + SLK N E K E + + P + N+G + ++ YD +L+ +
Sbjct: 156 LAIVLTDIGTSLKLAGNTQEGIQKYYEAIKIDSHYAPAYYNLGVVYSEMMQYDMALNCYE 215
Query: 739 KALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGI 855
KA ++P ++ + + +GD+ A ER L +
Sbjct: 216 KAALERPMYAEAYCNMGVIFKNRGDLESAIACYERCLAV 254
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 88,994,213
Number of Sequences: 369166
Number of extensions: 1703052
Number of successful extensions: 4715
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4660
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8534739105
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)