Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J20
(713 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-t... 364 e-100
sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain 363 e-100
sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1... 362 e-100
sp|P02552|TBA1_CHICK Tubulin alpha-1 chain 362 e-100
sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain 362 e-100
sp|P02550|TBA_PIG Tubulin alpha chain 361 1e-99
sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific 360 2e-99
sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1... 360 2e-99
sp|P06603|TBA1_DROME Tubulin alpha-1 chain 360 2e-99
sp|P52273|TBA_BOMMO Tubulin alpha chain 360 2e-99
>sp|P05214|TBA3_MOUSE Tubulin alpha-3/alpha-7 chain (Alpha-tubulin 3/7) (Alpha-tubulin
isotype M-alpha-3/7)
sp|Q68FR8|TBA3_RAT Tubulin alpha-3 chain (Alpha-tubulin 3)
sp|Q13748|TBA2_HUMAN Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 450
Score = 364 bits (934), Expect = e-100
Identities = 173/175 (98%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|Q8T6A5|TBA1_APLCA Tubulin alpha-1 chain
Length = 451
Score = 363 bits (931), Expect = e-100
Identities = 172/175 (98%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQ+VKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQLVKCDPRHGKYMACCMLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68369|TBA1_MOUSE Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin isotype
M-alpha-1)
sp|P68362|TBA2_CRIGR Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin II)
sp|Q71U36|TBA3_HUMAN Tubulin alpha-3 chain (Alpha-tubulin 3) (Tubulin B-alpha-1)
sp|P68370|TBA1_RAT Tubulin alpha-1 chain (Alpha-tubulin 1)
Length = 451
Score = 362 bits (929), Expect = e-100
Identities = 171/175 (97%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P02552|TBA1_CHICK Tubulin alpha-1 chain
Length = 412
Score = 362 bits (929), Expect = e-100
Identities = 171/175 (97%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 227 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 286
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 287 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 346
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 347 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 401
>sp|P41383|TBA2_PATVU Tubulin alpha-2/alpha-4 chain
Length = 452
Score = 362 bits (928), Expect = e-100
Identities = 171/175 (97%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQL+VAEITNACFEPANQMVKCDPRHGKYM+CCMLYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLTVAEITNACFEPANQMVKCDPRHGKYMSCCMLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P02550|TBA_PIG Tubulin alpha chain
Length = 451
Score = 361 bits (926), Expect = 1e-99
Identities = 170/175 (97%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINY+PPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P18288|TBAT_ONCMY Tubulin alpha chain, testis-specific
Length = 450
Score = 360 bits (925), Expect = 2e-99
Identities = 171/175 (97%), Positives = 173/175 (98%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPL TYAPVISAEKAYHE LSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLVTYAPVISAEKAYHEMLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGVDSV 440
>sp|P68361|TBA1_CRIGR Tubulin alpha-1 chain (Alpha-tubulin 1) (Alpha-tubulin I)
sp|P68363|TBAK_HUMAN Tubulin alpha-ubiquitous chain (Alpha-tubulin ubiquitous) (Tubulin
K-alpha-1)
sp|P05213|TBA2_MOUSE Tubulin alpha-2 chain (Alpha-tubulin 2) (Alpha-tubulin isotype
M-alpha-2)
sp|P68360|TBA1_MERUN Tubulin alpha-1 chain (Alpha-tubulin 1)
sp|Q6P9V9|TBA2_RAT Tubulin alpha-2 chain (Alpha-tubulin 2)
Length = 451
Score = 360 bits (925), Expect = 2e-99
Identities = 170/175 (97%), Positives = 175/175 (100%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACC+LYRGDVVP
Sbjct: 266 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCLLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKR+IQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDSV 527
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEARED+AALEKDYEEVG+DSV
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDMAALEKDYEEVGVDSV 440
>sp|P06603|TBA1_DROME Tubulin alpha-1 chain
Length = 450
Score = 360 bits (924), Expect = 2e-99
Identities = 171/174 (98%), Positives = 173/174 (99%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 524
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
>sp|P52273|TBA_BOMMO Tubulin alpha chain
Length = 450
Score = 360 bits (924), Expect = 2e-99
Identities = 171/174 (98%), Positives = 173/174 (99%)
Frame = +3
Query: 3 HFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 182
HFPL TYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP
Sbjct: 266 HFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVP 325
Query: 183 KDVNASIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 362
KDVNA+IATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA
Sbjct: 326 KDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIA 385
Query: 363 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGIDS 524
EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVG+DS
Sbjct: 386 EAWARLDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGMDS 439
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,189,147
Number of Sequences: 369166
Number of extensions: 1366813
Number of successful extensions: 3914
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3713
length of database: 68,354,980
effective HSP length: 107
effective length of database: 48,588,335
effective search space used: 6316483550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)