Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J18
(449 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8WPW2|PDX1_SUBDO Probable pyridoxin biosynthesis SNZERR... 155 4e-38
sp|O80448|PDXL1_ARATH Probable pyridoxin biosynthesis PDX1-... 140 1e-33
sp|P45293|PDXS_HAEIN Pyridoxal biosynthesis lyase pdxS 139 2e-33
sp|Q97PX2|PDXS_STRPN Pyridoxal biosynthesis lyase pdxS >gi|... 139 3e-33
sp|Q9AT63|PDX1_GINBI Pyridoxin biosynthesis protein PDX1 (S... 138 6e-33
sp|Q9FT25|PDX1_PHAVU Probable pyridoxin biosynthesis protei... 137 8e-33
sp|Q5YTD8|PDXS_NOCFA Pyridoxal biosynthesis lyase pdxS 135 5e-32
sp|Q39963|PDX1_HEVBR Probable pyridoxin biosynthesis protei... 134 9e-32
sp|Q827U0|PDXS_STRAW Pyridoxal biosynthesis lyase pdxS 134 9e-32
sp|Q8L940|PDXL3_ARATH Probable pyridoxin biosynthesis PDX1-... 134 1e-31
>sp|Q8WPW2|PDX1_SUBDO Probable pyridoxin biosynthesis SNZERR (PDX1 homolog) (Ethylene
response protein)
Length = 306
Score = 155 bits (392), Expect = 4e-38
Identities = 75/112 (66%), Positives = 95/112 (84%)
Frame = +2
Query: 47 QLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLMQLGVEGVFVGSGIFK 226
+L YA+ L V ++L+QKT L +LPVVNFAAGGLATPADV+LLMQLGV+GVFVGSGIFK
Sbjct: 191 ELYGYAKQLGVPLDLLQKTAKLGRLPVVNFAAGGLATPADVSLLMQLGVDGVFVGSGIFK 250
Query: 227 SDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINCDSVVQKWSLRES 382
S NP+KRA+AMV+AVTHY D +LA +SE+LG+ MVG+NC+ + +KW+ RES
Sbjct: 251 SGNPEKRAKAMVQAVTHYNDPKVLADVSEDLGDPMVGLNCEHLSEKWAQRES 302
>sp|O80448|PDXL1_ARATH Probable pyridoxin biosynthesis PDX1-like protein 1 (HEVER-like
protein)
Length = 309
Score = 140 bits (353), Expect = 1e-33
Identities = 68/125 (54%), Positives = 99/125 (79%)
Frame = +2
Query: 2 SIKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLM 181
S+ +I L+ MD+D++ YA+ + +LV +T++L +LPVV FAAGG+ATPAD AL+M
Sbjct: 183 SVNGAIRLLRSMDDDEVFTYAKKIAAPYDLVVQTKELGRLPVVQFAAGGVATPADAALMM 242
Query: 182 QLGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINCDSVVQ 361
QLG +GVFVGSG+FKS +P KRA+A+V+AVT+Y+DA +LA++S LGEAMVG+N D V+
Sbjct: 243 QLGCDGVFVGSGVFKSGDPVKRAKAIVQAVTNYRDAAVLAEVSCGLGEAMVGLNLDDKVE 302
Query: 362 KWSLR 376
+++ R
Sbjct: 303 RFASR 307
>sp|P45293|PDXS_HAEIN Pyridoxal biosynthesis lyase pdxS
Length = 291
Score = 139 bits (351), Expect = 2e-33
Identities = 73/113 (64%), Positives = 89/113 (78%)
Frame = +2
Query: 5 IKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLMQ 184
+ Q I ++ + ED+L A+ L+V VELVQ KLPVVNFAAGG+ATPAD AL+MQ
Sbjct: 166 MSQEIRRIQNLREDELYVAAKDLQVPVELVQYVHKHGKLPVVNFAAGGIATPADAALMMQ 225
Query: 185 LGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGIN 343
LG EGVFVGSGIFKS +P KRA A+VKAVT+Y++ +LAQISE+LGEAMVGIN
Sbjct: 226 LGAEGVFVGSGIFKSGDPIKRASAIVKAVTNYRNPQILAQISEDLGEAMVGIN 278
>sp|Q97PX2|PDXS_STRPN Pyridoxal biosynthesis lyase pdxS
sp|Q8DP71|PDXS_STRR6 Pyridoxal biosynthesis lyase pdxS
Length = 291
Score = 139 bits (350), Expect = 3e-33
Identities = 72/113 (63%), Positives = 90/113 (79%)
Frame = +2
Query: 5 IKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLMQ 184
+ Q I ++ + ED+L A+ L+V VELVQ + KLPVVNFAAGG+ATPAD AL+MQ
Sbjct: 166 MNQEIRRIQNLREDELYVAAKDLQVPVELVQYVHEHGKLPVVNFAAGGVATPADAALMMQ 225
Query: 185 LGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGIN 343
LG EGVFVGSGIFKS +P KRA A+VKAVT++++ +LAQISE+LGEAMVGIN
Sbjct: 226 LGAEGVFVGSGIFKSGDPVKRASAIVKAVTNFRNPQILAQISEDLGEAMVGIN 278
>sp|Q9AT63|PDX1_GINBI Pyridoxin biosynthesis protein PDX1 (Sor-like protein)
Length = 309
Score = 138 bits (347), Expect = 6e-33
Identities = 68/126 (53%), Positives = 98/126 (77%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 SIKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLM 181
S+ I L+ +D+D++ +A+ + ELV++T+ L +LPVVNFAAGG+ATPAD AL+M
Sbjct: 182 SVLGDIRKLQSLDDDEVFAFAKQIAAPYELVRQTKQLGRLPVVNFAAGGVATPADAALMM 241
Query: 182 QLGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINC-DSVV 358
QLG +GVFVGSG+FKS +P +RA A+V+AVTHY D ++LA++S +LGEAMVGIN D V
Sbjct: 242 QLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYNDPHILAEVSCSLGEAMVGINLKDEKV 301
Query: 359 QKWSLR 376
++++ R
Sbjct: 302 ERYAER 307
>sp|Q9FT25|PDX1_PHAVU Probable pyridoxin biosynthesis protein PDX1 (pvPDX1)
Length = 312
Score = 137 bits (346), Expect = 8e-33
Identities = 69/126 (54%), Positives = 97/126 (76%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 SIKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLM 181
S+ I L+ MD+D++ +A+S+ +LV +T+ L +LPVV+FAAGG+ATPAD AL+M
Sbjct: 185 SVMSDIRVLRNMDDDEVFTFAKSIAAPYDLVMQTKQLGRLPVVHFAAGGVATPADAALMM 244
Query: 182 QLGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGIN-CDSVV 358
QLG +GVFVGSG+FKS +P KRA A+V+AVTHY D +LA++S LGEAMVGIN D+ V
Sbjct: 245 QLGCDGVFVGSGVFKSGDPAKRARAIVQAVTHYSDPEILAEVSCGLGEAMVGINLSDTNV 304
Query: 359 QKWSLR 376
++++ R
Sbjct: 305 ERFANR 310
>sp|Q5YTD8|PDXS_NOCFA Pyridoxal biosynthesis lyase pdxS
Length = 306
Score = 135 bits (339), Expect = 5e-32
Identities = 70/125 (56%), Positives = 89/125 (71%)
Frame = +2
Query: 5 IKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLMQ 184
I+Q I L + ED+L A+ L+ ELV++ + KLPVV F AGG+ATPAD A++MQ
Sbjct: 179 IRQEIRKLAALPEDELYVAAKELQAPYELVREVAETGKLPVVLFTAGGIATPADAAMMMQ 238
Query: 185 LGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINCDSVVQK 364
LG EGVFVGSGIFKS NP +RAEA+VKA T Y D ++LA++S LGEAMVGIN + + Q
Sbjct: 239 LGAEGVFVGSGIFKSGNPAQRAEAIVKATTFYDDPDVLAKVSRGLGEAMVGINVEEIPQP 298
Query: 365 WSLRE 379
L E
Sbjct: 299 HRLAE 303
>sp|Q39963|PDX1_HEVBR Probable pyridoxin biosynthesis protein ER1 (PDX1 homolog)
(Ethylene-inducible protein HEVER)
Length = 309
Score = 134 bits (337), Expect = 9e-32
Identities = 67/126 (53%), Positives = 95/126 (75%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 SIKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLM 181
S+ I L+ MD+D++ +A+ + +LV +T+ L +LPVV FAAGG+ATPAD AL+M
Sbjct: 182 SVMGDIRLLRNMDDDEVFTFAKKIAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMM 241
Query: 182 QLGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINC-DSVV 358
QLG +GVFVGSG+FKS +P +RA A+V+AVTHY D ++LA++S LGEAMVGIN D V
Sbjct: 242 QLGCDGVFVGSGVFKSGDPARRARAIVQAVTHYSDPDMLAEVSCGLGEAMVGINLNDKKV 301
Query: 359 QKWSLR 376
++++ R
Sbjct: 302 ERFANR 307
>sp|Q827U0|PDXS_STRAW Pyridoxal biosynthesis lyase pdxS
Length = 304
Score = 134 bits (337), Expect = 9e-32
Identities = 68/117 (58%), Positives = 85/117 (72%)
Frame = +2
Query: 5 IKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLMQ 184
IK I L+ D ++L A+ LR E+V++ +L KLPVV F+AGG+ATPAD AL+ Q
Sbjct: 177 IKNEIARLRGYDNNELYAAAKELRAPYEIVKEVAELGKLPVVLFSAGGVATPADAALMRQ 236
Query: 185 LGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINCDSV 355
LG EGVFVGSGIFKS +P KRA A+VKA T Y D ++A S NLGEAMVGINCD++
Sbjct: 237 LGAEGVFVGSGIFKSGDPAKRAAAIVKATTFYDDPKIIADASRNLGEAMVGINCDTL 293
>sp|Q8L940|PDXL3_ARATH Probable pyridoxin biosynthesis PDX1-like protein 3
Length = 309
Score = 134 bits (336), Expect = 1e-31
Identities = 68/126 (53%), Positives = 93/126 (73%), Gaps = 1/126 (0%)
Frame = +2
Query: 2 SIKQSILNLKEMDEDQLERYARSLRVSVELVQKTRDLQKLPVVNFAAGGLATPADVALLM 181
S+ I L+ MD+D++ +A+ L +LV +T+ L +LPVV FAAGG+ATPAD AL+M
Sbjct: 182 SVNGDIRVLRNMDDDEVFTFAKKLAAPYDLVMQTKQLGRLPVVQFAAGGVATPADAALMM 241
Query: 182 QLGVEGVFVGSGIFKSDNPQKRAEAMVKAVTHYKDANLLAQISENLGEAMVGINC-DSVV 358
QLG +GVFVGSGIFKS +P +RA A+V+AVTHY D +L ++S LGEAMVGIN D V
Sbjct: 242 QLGCDGVFVGSGIFKSGDPARRARAIVQAVTHYSDPEMLVEVSCGLGEAMVGINLNDEKV 301
Query: 359 QKWSLR 376
++++ R
Sbjct: 302 ERFANR 307
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,143,767
Number of Sequences: 369166
Number of extensions: 740960
Number of successful extensions: 3368
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3361
length of database: 68,354,980
effective HSP length: 100
effective length of database: 49,881,480
effective search space used: 2444192520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)