Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J16
(929 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P13804|ETFA_HUMAN Electron transfer flavoprotein alpha-s... 334 2e-91
sp|Q8HXY0|ETFA_MACFA Electron transfer flavoprotein alpha-s... 334 2e-91
sp|Q99LC5|ETFA_MOUSE Electron transfer flavoprotein alpha-s... 332 7e-91
sp|Q5RC31|ETFA_PONPY Electron transfer flavoprotein alpha-s... 330 5e-90
sp|Q93615|ETFA_CAEEL Probable electron transfer flavoprotei... 328 1e-89
sp|P13803|ETFA_RAT Electron transfer flavoprotein alpha-sub... 328 1e-89
sp|P53573|ETFA_BRAJA Electron transfer flavoprotein alpha-s... 278 2e-74
sp|P38974|ETFA_PARDE Electron transfer flavoprotein alpha-s... 264 3e-70
sp|Q8J0W1|ETFA_CRYNE Probable electron transfer flavoprotei... 260 3e-69
sp|Q8J112|ETFA_CRYNV Probable electron transfer flavoprotei... 259 8e-69
>sp|P13804|ETFA_HUMAN Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 334 bits (856), Expect = 2e-91
Identities = 165/303 (54%), Positives = 222/303 (73%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H+N L PITLN +TAA++LG ++ LV G C VA+++ K+ G+ V +A + ++KG
Sbjct: 27 EHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYKG 86
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
L E ++ L+ Q + N++HI GA++ GKN +PR A+K ++ +SDI I+SP+TFVR
Sbjct: 87 LLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVR 146
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
TIYAGNA+ TV+ DEKV +VRGTSF+ A + + + + + S+++ Q++
Sbjct: 147 TIYAGNALCTVKCDEKVKVFSVRGTSFDAAATSGGSASSEKASSTSPV--EISEWLDQKL 204
Query: 561 LKNDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVG 740
K+DRPEL AK+V+SGGRGLKSGENFK+LY+LAD+L+ +VPNDMQVG
Sbjct: 205 TKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVG 264
Query: 741 QTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVP 920
QTGKIVAPELY+A+GISGAIQHLAGMKDSK IVAINKDPEAPIFQVADYG+V DLFK VP
Sbjct: 265 QTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVP 324
Query: 921 QMT 929
+MT
Sbjct: 325 EMT 327
>sp|Q8HXY0|ETFA_MACFA Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 334 bits (856), Expect = 2e-91
Identities = 166/303 (54%), Positives = 221/303 (72%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H+N L PITLN +TAA++LG ++ LV G C VA+++ K+ G+ V +A + ++G
Sbjct: 27 EHANDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDAYRG 86
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
LAE ++ L+ Q + N++HI GA++ GKN +PR A+K ++ +SDI I+SP+TFVR
Sbjct: 87 LLAEDLTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVR 146
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
TIYAGNA+ TV+ DEKV +VRGTSFE A + + + + S+++ Q++
Sbjct: 147 TIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSGGTASSEKASSTSPV--EISEWLDQKL 204
Query: 561 LKNDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVG 740
K+DRPEL AK+V+SGGRGLKSGENFK+LY+LAD+L+ +VPNDMQVG
Sbjct: 205 TKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVG 264
Query: 741 QTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVP 920
QTGKIVAPELY+A+GISGAIQHLAGMKDSK IVAINKDPEAPIFQVADYG+V DLFK VP
Sbjct: 265 QTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVP 324
Query: 921 QMT 929
+MT
Sbjct: 325 EMT 327
>sp|Q99LC5|ETFA_MOUSE Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 332 bits (852), Expect = 7e-91
Identities = 166/303 (54%), Positives = 220/303 (72%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H+N L PITLN +TAA +LG ++ LV G C V +++ K+ GV V +A + +KG
Sbjct: 27 EHANDSLAPITLNTITAAGRLGGEVSCLVAGTKCDKVVQDLCKVAGVAKVLVAQHDAYKG 86
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
L E ++ L+ + Q + +++HI GA++ GKN +PR A+K ++ VSDI I+SP+TFVR
Sbjct: 87 LLPEELTPLILETQKQFSYTHICAGASAFGKNLLPRVAAKLNVAPVSDIIEIKSPDTFVR 146
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
TIYAGNA+ TV+ DEKV +VRGTSFE A + + P ++ + S+++ Q++
Sbjct: 147 TIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSGGSASSEKAPSSSSV--GISEWLDQKL 204
Query: 561 LKNDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVG 740
K+DRPEL AK+V+SGGRGLKSGENFK+LY+LAD+L+ +VPNDMQVG
Sbjct: 205 TKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQLHAAVGASRAAVDAGFVPNDMQVG 264
Query: 741 QTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVP 920
QTGKIVAPELY+A+GISGAIQHL GMKDSK IVAINKDPEAPIFQVADYG+V DLFK VP
Sbjct: 265 QTGKIVAPELYIAVGISGAIQHLTGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVP 324
Query: 921 QMT 929
+MT
Sbjct: 325 EMT 327
>sp|Q5RC31|ETFA_PONPY Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 330 bits (845), Expect = 5e-90
Identities = 163/303 (53%), Positives = 221/303 (72%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H++ L PITLN +TAA++LG ++ LV G C VA+++ K+ G+ V +A + +++G
Sbjct: 27 EHADDSLAPITLNTITAATRLGGEVSCLVAGTKCDKVAQDLCKVAGIAKVLVAQHDVYRG 86
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
L E ++ L+ Q + N++HI GA++ GKN +PR A+K ++ +SDI I+SP+TFVR
Sbjct: 87 LLPEELTPLILATQKQFNYTHICAGASAFGKNLLPRVAAKLEVAPISDIIAIKSPDTFVR 146
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
TIYAGNA+ TV+ DEKV +VRGTSFE A + + + + + S+++ Q++
Sbjct: 147 TIYAGNALCTVKCDEKVKVFSVRGTSFEAAATSGGSASSEKASSTSPV--EISEWLDQKL 204
Query: 561 LKNDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVG 740
K+DRPEL AK+V+SGGRGLKSGENFK+LY+LAD+ + +VPNDMQVG
Sbjct: 205 TKSDRPELTGAKVVVSGGRGLKSGENFKLLYDLADQRHAAVGASRAAVDAGFVPNDMQVG 264
Query: 741 QTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVP 920
QTGKIVAPELY+A+GISGAIQHLAGMKDSK IVAINKDPEAPIFQVADYG+V DLFK VP
Sbjct: 265 QTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVP 324
Query: 921 QMT 929
+MT
Sbjct: 325 EMT 327
>sp|Q93615|ETFA_CAEEL Probable electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF)
Length = 332
Score = 328 bits (842), Expect = 1e-89
Identities = 168/303 (55%), Positives = 224/303 (73%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H KL PITLN +TAASKLGN++ LV G N VAE+V+K+ GVK V +A + K
Sbjct: 28 EHDETKLAPITLNAITAASKLGNEVSVLVTGANATKVAEQVAKVNGVKRVLVAQDEKLKN 87
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
L E ++ ++ Q + NF+ I G+++ G+ +PR A+K +S +SD+T + S ++F R
Sbjct: 88 NLPERVAPVILASQKQFNFTAITAGSSAFGRGVIPRVAAKLDVSSISDVTEVHSADSFTR 147
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
T+YAGNA++ V+S + +T RGTSFEPA E + +++ P +A+IK D S+F+ QE+
Sbjct: 148 TLYAGNAVKKVKSTAPIKLLTFRGTSFEPAK-EGGSGAVENAP-SADIKTDLSEFLGQEL 205
Query: 561 LKNDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVG 740
K++RP+LA+AK+V+SGGRGLKSG+NFK++Y+LADKL YVPNDMQVG
Sbjct: 206 SKSERPDLATAKVVVSGGRGLKSGDNFKLIYDLADKLGAGVGASRAAVDAGYVPNDMQVG 265
Query: 741 QTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVP 920
QTGKIVAPELY+AIGISGAIQHLAGMKDSKVIVAINKDP+APIFQVAD GL DLFKAVP
Sbjct: 266 QTGKIVAPELYIAIGISGAIQHLAGMKDSKVIVAINKDPDAPIFQVADIGLKADLFKAVP 325
Query: 921 QMT 929
++T
Sbjct: 326 ELT 328
>sp|P13803|ETFA_RAT Electron transfer flavoprotein alpha-subunit, mitochondrial
precursor (Alpha-ETF)
Length = 333
Score = 328 bits (842), Expect = 1e-89
Identities = 165/303 (54%), Positives = 219/303 (72%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H+N L PITLN +TAA +LG ++ LV G C V +++ K+ GV V +A + +KG
Sbjct: 27 EHANDSLAPITLNTITAAGRLGGEVSCLVAGTKCDKVVQDLCKVAGVAKVLVAQHDAYKG 86
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
L E ++ L+ + Q + +++HI+ GA++ GKN +PR A+K ++ VSDI I+SP+TFVR
Sbjct: 87 LLPEELTPLILETQKQFSYTHIVAGASAFGKNLLPRVAAKLNVAPVSDIIEIKSPDTFVR 146
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
TIYA NA+ TV+ DEKV +VRGTSFE A + + P ++ S+++ Q++
Sbjct: 147 TIYAANALCTVKCDEKVKVFSVRGTSFEAAAASGGSASSEKAPSSSSA--GISEWLDQKL 204
Query: 561 LKNDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVG 740
K+DRPEL AK+V+SGGRGLKSGENFK+ Y+LAD+L+ +VPNDMQVG
Sbjct: 205 TKSDRPELTGAKVVVSGGRGLKSGENFKLQYDLADQLHAAVGASRAAVDAGFVPNDMQVG 264
Query: 741 QTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVP 920
QTGKIVAPELY+A+GISGAIQHLAGMKDSK IVAINKDPEAPIFQVADYG+V DLFK VP
Sbjct: 265 QTGKIVAPELYIAVGISGAIQHLAGMKDSKTIVAINKDPEAPIFQVADYGIVADLFKVVP 324
Query: 921 QMT 929
+MT
Sbjct: 325 EMT 327
>sp|P53573|ETFA_BRAJA Electron transfer flavoprotein alpha-subunit (Alpha-ETF) (Electron
transfer flavoprotein large subunit) (ETFLS)
Length = 314
Score = 278 bits (711), Expect = 2e-74
Identities = 156/304 (51%), Positives = 204/304 (67%), Gaps = 1/304 (0%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKG 200
+H N L T +TAA+ LG D+ LV GE K+ A+ +K+ GVK V LAD A++
Sbjct: 8 EHDNASLKDATNKALTAAAALGADVEVLVAGEGAKAAADAAAKLAGVKKVLLADGALYAH 67
Query: 201 QLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVR 380
LAE +++L+ L ++ I+ ATS KN MPR A+ + VS+I + +P+T+ R
Sbjct: 68 DLAEPLAALIVSLA--PSYDAIVAPATSRFKNVMPRVAALLDVMQVSEIIKVVAPDTYER 125
Query: 381 TIYAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEI 560
IYAGNAIQTV+S + ITVR ++F A E + ++SV AA+ S F+ +E+
Sbjct: 126 PIYAGNAIQTVKSKDAKKVITVRTSTFAAAG-EGGSAPVESVQAAAD--PGLSSFVGEEV 182
Query: 561 LKNDRPELASAKIVISGGRGLKSGENF-KILYELADKLNXXXXXXXXXXXXXYVPNDMQV 737
K+DRPEL SAKI++SGGR ++S ENF K + LADKL Y PND QV
Sbjct: 183 AKSDRPELTSAKIIVSGGRAMQSRENFAKYIEPLADKLGAGVGASRAAVDAGYAPNDWQV 242
Query: 738 GQTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAV 917
GQTGK+VAPELYVA+GISGAIQHLAGMKDSKVIVAINKD +APIFQVADYGLV DL++AV
Sbjct: 243 GQTGKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEDAPIFQVADYGLVADLYQAV 302
Query: 918 PQMT 929
P++T
Sbjct: 303 PELT 306
>sp|P38974|ETFA_PARDE Electron transfer flavoprotein alpha-subunit (Alpha-ETF) (Electron
transfer flavoprotein large subunit) (ETFLS)
Length = 308
Score = 264 bits (674), Expect = 3e-70
Identities = 150/301 (49%), Positives = 193/301 (64%)
Frame = +3
Query: 27 SNGKLNPITLNVVTAASKLGNDIHALVIGENCKSVAEEVSKIKGVKVVHLADNAIFKGQL 206
+NG LN AA K D+ L G + K+ AEE +KI GV V +A++A++ +L
Sbjct: 10 TNGALNRDATAKAVAAVKALGDVTVLCAGASAKAAAEEAAKIAGVAKVLVAEDALYGHRL 69
Query: 207 AESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSPNTFVRTI 386
AE ++L+ L G ++SHI AT+ KN MPR A+ + V+SD++ I +TF R I
Sbjct: 70 AEPTAALIVGLAG--DYSHIAAPATTDAKNVMPRVAALLDVMVLSDVSAILDADTFERPI 127
Query: 387 YAGNAIQTVQSDEKVHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKFIKQEILK 566
YAGNAIQ V+S + T+R SF+ A E + AA+ S ++ E+ +
Sbjct: 128 YAGNAIQVVKSKDAKKVFTIRTASFDAAG-EGGTAPVTETAAAAD--PGLSSWVADEVAE 184
Query: 567 NDRPELASAKIVISGGRGLKSGENFKILYELADKLNXXXXXXXXXXXXXYVPNDMQVGQT 746
+DRPEL SA+ V+SGGRGL S E+F I+ ELADKL Y PND QVGQT
Sbjct: 185 SDRPELTSARRVVSGGRGLGSKESFAIIEELADKLGAAVGASRAAVDSGYAPNDWQVGQT 244
Query: 747 GKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVEDLFKAVPQM 926
GK+VAPELYVA+GISGAIQHLAGMKDSKVIVAINKD EAPIFQ+ADYGLV DLF VP++
Sbjct: 245 GKVVAPELYVAVGISGAIQHLAGMKDSKVIVAINKDEEAPIFQIADYGLVGDLFSVVPEL 304
Query: 927 T 929
T
Sbjct: 305 T 305
>sp|Q8J0W1|ETFA_CRYNE Probable electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF)
Length = 346
Score = 260 bits (665), Expect = 3e-69
Identities = 144/308 (46%), Positives = 199/308 (64%), Gaps = 6/308 (1%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIG--ENCKSVAEEVSKIKGVKVVHLADNAIF 194
+H GKLN +L+ VTAA LGND H L++G ++V + +IK + ++LA + +
Sbjct: 32 EHKAGKLNEASLSAVTAAKTLGNDTHGLLVGTKSEIENVLDRTKEIKDLSKIYLATSDTY 91
Query: 195 KGQLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQSP-NT 371
LAE ++SLL + ++ SHI T+ GKN PR A S+++DI ++S +T
Sbjct: 92 SHSLAEPLASLLASIASAKDVSHIFAAHTAVGKNIFPRLAGLLDTSLIADIIALESSGDT 151
Query: 372 FVRTIYAGNAIQTVQSDEK--VHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKF 545
F R IYAGNA+ T++S K V +TVR T+F+ A + N + ++ V + ++F
Sbjct: 152 FTRPIYAGNAVLTIKSSPKDSVKVVTVRSTAFDKAAVANGSAAVEDVDIITV--DTPTQF 209
Query: 546 IKQEILKNDRPELASAKIVISGGRGLKSGENFK-ILYELADKLNXXXXXXXXXXXXXYVP 722
+ +E+ + RP+LASA V+SGGR LKS E+F IL LAD L Y
Sbjct: 210 VSEELTVSSRPDLASAARVVSGGRALKSKESFDTILDPLADSLGAAVGASRAAVDAGYAD 269
Query: 723 NDMQVGQTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVED 902
N +QVGQTGK+VAPELYVAIGISGAIQHLAGMK+SK+I+AINKDP+APIFQVAD GLV D
Sbjct: 270 NSLQVGQTGKVVAPELYVAIGISGAIQHLAGMKESKMIIAINKDPDAPIFQVADVGLVAD 329
Query: 903 LFKAVPQM 926
LF++VPQ+
Sbjct: 330 LFESVPQL 337
>sp|Q8J112|ETFA_CRYNV Probable electron transfer flavoprotein alpha-subunit,
mitochondrial precursor (Alpha-ETF)
Length = 346
Score = 259 bits (662), Expect = 8e-69
Identities = 146/308 (47%), Positives = 201/308 (65%), Gaps = 6/308 (1%)
Frame = +3
Query: 21 DHSNGKLNPITLNVVTAASKLGNDIHALVIGE--NCKSVAEEVSKIKGVKVVHLADNAIF 194
+H G+LN +L+ VTAA GND H +++G + V +E KIK + ++LA + +
Sbjct: 32 EHKAGRLNDASLSAVTAAKATGNDTHGILVGSMAEVEGVLKEAKKIKDLSKIYLATSDAY 91
Query: 195 KGQLAESISSLLEKLQGKQNFSHILTGATSTGKNFMPRFASKSGISVVSDITGIQ-SPNT 371
LAE+++ LL + ++ SH+ T+ GKN PR A S+V+DI + S T
Sbjct: 92 SHSLAEALAPLLASIVPTKDVSHVFAAHTAVGKNVFPRLAGMLDSSLVADIIALDPSRGT 151
Query: 372 FVRTIYAGNAIQTVQSDEK--VHCITVRGTSFEPAVLENNAVEIKSVPEAAEIKNDKSKF 545
F R IYAGNA+ TV+S K V +TVR T+F+ A + + + +++ V E I++ ++F
Sbjct: 152 FTRPIYAGNAVLTVKSSPKDSVKIVTVRSTAFDKAAIADGSADVEDV-EILAIESP-TQF 209
Query: 546 IKQEILKNDRPELASAKIVISGGRGLKSGENF-KILYELADKLNXXXXXXXXXXXXXYVP 722
I +E+ + RP+LASA V+SGGR LKS E+F KIL LAD L Y
Sbjct: 210 ISEELTVSSRPDLASAARVVSGGRALKSKESFDKILDPLADSLGAAVGASRAAVDAGYAD 269
Query: 723 NDMQVGQTGKIVAPELYVAIGISGAIQHLAGMKDSKVIVAINKDPEAPIFQVADYGLVED 902
N +QVGQTGK+VAPELYVA+GISGAIQHLAGMK+SK+IVAINKDP+APIFQVAD GLV D
Sbjct: 270 NSLQVGQTGKVVAPELYVAVGISGAIQHLAGMKESKMIVAINKDPDAPIFQVADVGLVAD 329
Query: 903 LFKAVPQM 926
LF++VPQ+
Sbjct: 330 LFESVPQL 337
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,347,100
Number of Sequences: 369166
Number of extensions: 1882851
Number of successful extensions: 5238
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5194
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9558791870
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)