Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J15
(627 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chro... 32 1.7
sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotid... 29 8.6
>sp|O14207|YDT2_SCHPO Hypothetical protein C6B12.02c in chromosome I
Length = 1888
Score = 31.6 bits (70), Expect = 1.7
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = -2
Query: 494 FSLEQFIFLTTNKLKSNNELIVNILPYFFKKKLISLSFLEDSKYIW*LESELK*GKVE*T 315
F+++ +F T KLK E ++ LPYF + + L L + L S++ G V
Sbjct: 717 FNIQDDVFKTFEKLKDTFETVLENLPYFTNSETVDLYNLLSFCSAFILHSQVSMGLVNLA 776
Query: 314 NSF 306
+SF
Sbjct: 777 SSF 779
>sp|P49916|DNL3_HUMAN DNA ligase III (Polydeoxyribonucleotide synthase [ATP])
Length = 922
Score = 29.3 bits (64), Expect = 8.6
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +2
Query: 59 AAKSCANGCKIPIKKDAEKVQIEKTG 136
A K C NG IK D E+VQ+ K G
Sbjct: 408 AMKKCPNGMFSEIKYDGERVQVHKNG 433
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,554,075
Number of Sequences: 369166
Number of extensions: 808661
Number of successful extensions: 2073
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2028
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2072
length of database: 68,354,980
effective HSP length: 106
effective length of database: 48,773,070
effective search space used: 4974853140
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)