Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J10
(315 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|O43852|CALU_HUMAN Calumenin precursor (Crocalbin) (IEF S... 104 7e-23
sp|O35887|CALU_MOUSE Calumenin precursor (Crocalbin) 104 7e-23
sp|O35783|CALU_RAT Calumenin precursor (Crocalbin) (CBP-50) 102 3e-22
sp|Q15293|RCN1_HUMAN Reticulocalbin-1 precursor 98 7e-21
sp|Q05186|RCN1_MOUSE Reticulocalbin-1 precursor 96 3e-20
sp|O93434|RCN1_FUGRU Reticulocalbin-1 precursor 93 2e-19
sp|Q8BH97|RCN3_MOUSE Reticulocalbin-3 precursor 92 4e-19
sp|Q96D15|RCN3_HUMAN Reticulocalbin-3 precursor (EF-hand ca... 89 4e-18
sp|Q62703|RCN2_RAT Reticulocalbin-2 precursor (Calcium-bind... 59 5e-09
sp|Q8BP92|RCN2_MOUSE Reticulocalbin-2 precursor (Taipoxin-a... 59 5e-09
>sp|O43852|CALU_HUMAN Calumenin precursor (Crocalbin) (IEF SSP 9302)
Length = 315
Score = 104 bits (259), Expect = 7e-23
Identities = 47/76 (61%), Positives = 59/76 (77%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
E RD N+DGK+D +E WILP D++H AE HL+ ++D NKDG LTK EI++KYD+FV
Sbjct: 239 EFRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKDGKLTKEEIVDKYDLFV 298
Query: 183 GSQATDFGDALTRHTE 230
GSQATDFG+AL RH E
Sbjct: 299 GSQATDFGEALVRHDE 314
>sp|O35887|CALU_MOUSE Calumenin precursor (Crocalbin)
Length = 315
Score = 104 bits (259), Expect = 7e-23
Identities = 47/76 (61%), Positives = 59/76 (77%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
E RD N+DGK+D +E WILP D++H AE HL+ ++D NKDG LTK EI++KYD+FV
Sbjct: 239 EFRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQNKDGKLTKEEIVDKYDLFV 298
Query: 183 GSQATDFGDALTRHTE 230
GSQATDFG+AL RH E
Sbjct: 299 GSQATDFGEALVRHDE 314
>sp|O35783|CALU_RAT Calumenin precursor (Crocalbin) (CBP-50)
Length = 315
Score = 102 bits (254), Expect = 3e-22
Identities = 46/76 (60%), Positives = 59/76 (77%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
E RD N+DGK+D +E WILP D++H AE HL+ ++D +KDG LTK EI++KYD+FV
Sbjct: 239 EFRDKNRDGKMDKEETKDWILPSDYDHAEAEARHLVYESDQDKDGKLTKEEIVDKYDLFV 298
Query: 183 GSQATDFGDALTRHTE 230
GSQATDFG+AL RH E
Sbjct: 299 GSQATDFGEALVRHDE 314
>sp|Q15293|RCN1_HUMAN Reticulocalbin-1 precursor
Length = 331
Score = 97.8 bits (242), Expect = 7e-21
Identities = 48/78 (61%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
E RDLNKDGKLD DEI WILP D++H AE HL+ ++D NKD LTK EILE +++FV
Sbjct: 254 EFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLVYESDKNKDEKLTKEEILENWNMFV 313
Query: 183 GSQATDFGDALTR-HTEL 233
GSQAT++G+ LT+ H EL
Sbjct: 314 GSQATNYGEDLTKNHDEL 331
>sp|Q05186|RCN1_MOUSE Reticulocalbin-1 precursor
Length = 325
Score = 95.9 bits (237), Expect = 3e-20
Identities = 46/78 (58%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
+ RDLNKDGKLD DEI WILP D++H AE HL+ ++D NKD LTK EIL+ +++FV
Sbjct: 248 DFRDLNKDGKLDKDEIRHWILPQDYDHAQAEARHLVYESDKNKDEMLTKEEILDNWNMFV 307
Query: 183 GSQATDFGDALTR-HTEL 233
GSQAT++G+ LT+ H EL
Sbjct: 308 GSQATNYGEDLTKNHDEL 325
>sp|O93434|RCN1_FUGRU Reticulocalbin-1 precursor
Length = 322
Score = 92.8 bits (229), Expect = 2e-19
Identities = 44/78 (56%), Positives = 60/78 (76%), Gaps = 1/78 (1%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
+ RDLNKDGK+D DEI WI+P D++H AE HL+ ++D +KD LTK EIL+ +++FV
Sbjct: 245 DFRDLNKDGKMDLDEIRHWIMPQDYDHAQAEARHLVYESDKDKDQMLTKEEILDNWNMFV 304
Query: 183 GSQATDFGDALTR-HTEL 233
GSQAT++G+ LTR H EL
Sbjct: 305 GSQATNYGEDLTRNHDEL 322
>sp|Q8BH97|RCN3_MOUSE Reticulocalbin-3 precursor
Length = 328
Score = 92.0 bits (227), Expect = 4e-19
Identities = 40/74 (54%), Positives = 55/74 (74%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
E RDLNKDG+LD E+G W+LP + E NHL+ ++D +KDG L+K EIL +++FV
Sbjct: 251 EFRDLNKDGRLDGSEVGYWVLPPSQDQPLVEANHLLHESDTDKDGRLSKAEILSNWNMFV 310
Query: 183 GSQATDFGDALTRH 224
GSQAT++G+ LTRH
Sbjct: 311 GSQATNYGEDLTRH 324
>sp|Q96D15|RCN3_HUMAN Reticulocalbin-3 precursor (EF-hand calcium-binding protein RLP49)
Length = 328
Score = 88.6 bits (218), Expect = 4e-18
Identities = 39/74 (52%), Positives = 54/74 (72%)
Frame = +3
Query: 3 EHRDLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFV 182
+ RDLNKDG LD E+G W+LP + E NHL+ ++D +KDG L+K EIL +++FV
Sbjct: 251 DFRDLNKDGHLDGSEVGHWVLPPAQDQPLVEANHLLHESDTDKDGRLSKAEILGNWNMFV 310
Query: 183 GSQATDFGDALTRH 224
GSQAT++G+ LTRH
Sbjct: 311 GSQATNYGEDLTRH 324
>sp|Q62703|RCN2_RAT Reticulocalbin-2 precursor (Calcium-binding protein ERC-55)
(Taipoxin-associated calcium-binding protein 49)
(TCBP-49)
Length = 320
Score = 58.5 bits (140), Expect = 5e-09
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +3
Query: 12 DLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQ 191
D + DG+LD E+ W++P + E HL+++ D N D L++ EILE D+F+ S+
Sbjct: 243 DKDSDGRLDPQELLSWVVPNNQGIAQEEALHLIDEMDLNSDKKLSEEEILENQDLFLTSE 302
Query: 192 ATDFGDAL 215
ATD+G L
Sbjct: 303 ATDYGRQL 310
Score = 30.0 bits (66), Expect = 1.7
Identities = 17/66 (25%), Positives = 31/66 (46%)
Frame = +3
Query: 12 DLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQ 191
D + DG L +E+ +WI ++ E + D N DG +T ++Y+V + +
Sbjct: 77 DSDSDGFLTENELSQWIQMSFKHYAMQEAKQQFVEYDKNSDGTVT----WDEYNVQMYDR 132
Query: 192 ATDFGD 209
DF +
Sbjct: 133 VIDFDE 138
>sp|Q8BP92|RCN2_MOUSE Reticulocalbin-2 precursor (Taipoxin-associated calcium-binding
protein 49) (TCBP-49)
Length = 320
Score = 58.5 bits (140), Expect = 5e-09
Identities = 27/68 (39%), Positives = 42/68 (61%)
Frame = +3
Query: 12 DLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQ 191
D + DG+LD E+ W++P + E HL+++ D N D L++ EILE D+F+ S+
Sbjct: 243 DKDNDGRLDPQELLSWVVPNNQGIAQEEALHLIDEMDLNSDKKLSEEEILENQDLFLTSE 302
Query: 192 ATDFGDAL 215
ATD+G L
Sbjct: 303 ATDYGRQL 310
Score = 29.6 bits (65), Expect = 2.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 12 DLNKDGKLDHDEIGKWILPLDHNHVTAETNHLMEQTDANKDGYLTKVEILEKYDVFVGSQ 191
D + DG L +E+ +WI ++ E + D N DG +T ++Y++ + +
Sbjct: 77 DSDSDGFLTENELSQWIQMSFKHYAMQEAKQQFVEYDKNSDGAVT----WDEYNIQMYDR 132
Query: 192 ATDFGD 209
DF +
Sbjct: 133 VIDFDE 138
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 44,190,505
Number of Sequences: 369166
Number of extensions: 881719
Number of successful extensions: 2531
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2518
length of database: 68,354,980
effective HSP length: 73
effective length of database: 54,869,325
effective search space used: 1700949075
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)