Planarian EST Database


Dr_sW_017_J05

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_017_J05
         (312 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P34512|GRP1_CAEEL  GTP exchange factor for ARFs 1               28   6.6  
sp|Q8R5Z2|TIG_FUSNN  Trigger factor (TF)                           28   6.6  
>sp|P34512|GRP1_CAEEL GTP exchange factor for ARFs 1
          Length = 393

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 10/29 (34%), Positives = 20/29 (68%)
 Frame = +1

Query: 67  LNKIIHHPNLKRNPKWDKALDNIQQRLER 153
           +N ++H+PN+K  P  +K ++  +Q LE+
Sbjct: 193 VNTLLHNPNVKDKPSLEKYIEMNEQLLEK 221
>sp|Q8R5Z2|TIG_FUSNN Trigger factor (TF)
          Length = 429

 Score = 28.1 bits (61), Expect = 6.6
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 56  MFARSIKSFIIQISKEIQNGIKLLIIFSKDLNDNNFIRTEETI 184
           M   ++++F  Q++   +  +K+ +I  +   DNNF  T+E +
Sbjct: 334 MMGGNVETFAAQLAPAAEKKVKIDLILDRIAKDNNFEATDEEL 376
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,649,654
Number of Sequences: 369166
Number of extensions: 410773
Number of successful extensions: 1228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)