Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J05
(312 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P34512|GRP1_CAEEL GTP exchange factor for ARFs 1 28 6.6
sp|Q8R5Z2|TIG_FUSNN Trigger factor (TF) 28 6.6
>sp|P34512|GRP1_CAEEL GTP exchange factor for ARFs 1
Length = 393
Score = 28.1 bits (61), Expect = 6.6
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 67 LNKIIHHPNLKRNPKWDKALDNIQQRLER 153
+N ++H+PN+K P +K ++ +Q LE+
Sbjct: 193 VNTLLHNPNVKDKPSLEKYIEMNEQLLEK 221
>sp|Q8R5Z2|TIG_FUSNN Trigger factor (TF)
Length = 429
Score = 28.1 bits (61), Expect = 6.6
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +2
Query: 56 MFARSIKSFIIQISKEIQNGIKLLIIFSKDLNDNNFIRTEETI 184
M ++++F Q++ + +K+ +I + DNNF T+E +
Sbjct: 334 MMGGNVETFAAQLAPAAEKKVKIDLILDRIAKDNNFEATDEEL 376
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,649,654
Number of Sequences: 369166
Number of extensions: 410773
Number of successful extensions: 1228
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1221
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1228
length of database: 68,354,980
effective HSP length: 72
effective length of database: 55,054,060
effective search space used: 1706675860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)