Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_J01
(882 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein... 238 2e-62
sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprote... 238 2e-62
sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprote... 235 1e-61
sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprote... 233 7e-61
sp|Q6VY05|DND1_MOUSE Dead end protein homolog 1 (RNA-bindin... 120 7e-27
sp|Q8IYX4|DND1_HUMAN Dead end protein homolog 1 (RNA-bindin... 115 2e-25
sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1 115 2e-25
sp|Q7T1H5|DND1_BRARE Dead end protein 1 114 4e-25
sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly... 58 3e-08
sp|P20397|NUCL_XENLA Nucleolin (Protein C23) 56 1e-07
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (hnRNP-Q)
(Synaptotagmin binding, cytoplasmic RNA interacting
protein) (Liver regeneration-related protein LRRG077)
Length = 533
Score = 238 bits (606), Expect = 2e-62
Identities = 124/282 (43%), Positives = 181/282 (64%), Gaps = 4/282 (1%)
Frame = +2
Query: 41 GQRRCG--PPEN-WSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETET 211
GQR+ G PP++ +S P G EIF+ KIP+D FE EL+P+ + G I+ RLMM+ T
Sbjct: 50 GQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLT 109
Query: 212 N-HRGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEI 388
+RG+ F + T E A+ AV NN +I+ ++GVC SV N RLFVG IPK KTK +I
Sbjct: 110 GLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQI 169
Query: 389 HDEMSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVA 568
+E S T+ + D+I+Y DK KNRGF F+EY +HK AA AR++++S +++WG
Sbjct: 170 LEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGT 229
Query: 569 VDWAEPERKVEDEIMSKVKILYVRNLMLTTTENIIYLEFSQHIDDPQEIVKVKKIDDFAF 748
V+WA+P + E+M+KVK+L+VRNL T TE I+ FSQ ++ +VKK+ D+AF
Sbjct: 230 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQF----GKLERVKKLKDYAF 285
Query: 749 VHFKSREQAEIVKNKTHGISLEGSTIEVHFAKPVNKIDQQQK 874
+HF R+ A + +G LEG IE+ FAKP ++ +++K
Sbjct: 286 IHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 327
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (hnRNP-Q)
(Synaptotagmin binding, cytoplasmic RNA interacting
protein) (Glycine-and tyrosine-rich RNA binding protein)
(GRY-RBP) (NS1-associated protein 1) (pp68)
Length = 623
Score = 238 bits (606), Expect = 2e-62
Identities = 124/282 (43%), Positives = 181/282 (64%), Gaps = 4/282 (1%)
Frame = +2
Query: 41 GQRRCG--PPEN-WSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETET 211
GQR+ G PP++ +S P G EIF+ KIP+D FE EL+P+ + G I+ RLMM+ T
Sbjct: 140 GQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLT 199
Query: 212 N-HRGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEI 388
+RG+ F + T E A+ AV NN +I+ ++GVC SV N RLFVG IPK KTK +I
Sbjct: 200 GLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQI 259
Query: 389 HDEMSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVA 568
+E S T+ + D+I+Y DK KNRGF F+EY +HK AA AR++++S +++WG
Sbjct: 260 LEEFSKVTEGLTDVILYHQPDDKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGT 319
Query: 569 VDWAEPERKVEDEIMSKVKILYVRNLMLTTTENIIYLEFSQHIDDPQEIVKVKKIDDFAF 748
V+WA+P + E+M+KVK+L+VRNL T TE I+ FSQ ++ +VKK+ D+AF
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKSFSQF----GKLERVKKLKDYAF 375
Query: 749 VHFKSREQAEIVKNKTHGISLEGSTIEVHFAKPVNKIDQQQK 874
+HF R+ A + +G LEG IE+ FAKP ++ +++K
Sbjct: 376 IHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q) (hnRNP-Q)
(Synaptotagmin binding, cytoplasmic RNA interacting
protein) (Glycine-and tyrosine-rich RNA binding protein)
(GRY-RBP) (NS1-associated protein 1)
Length = 623
Score = 235 bits (599), Expect = 1e-61
Identities = 123/282 (43%), Positives = 180/282 (63%), Gaps = 4/282 (1%)
Frame = +2
Query: 41 GQRRCG--PPEN-WSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETET 211
GQR+ G PP++ +S P G EIF+ KIP+D FE EL+P+ + G I+ RLMM+ T
Sbjct: 140 GQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMDPLT 199
Query: 212 N-HRGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEI 388
+RG+ F + T E A+ AV NN +I+ ++GVC SV N RLFVG IPK KTK +I
Sbjct: 200 GLNRGYAFVTFCTKEAAQEAVKLYNNHEIRSGKHIGVCISVANNRLFVGSIPKSKTKEQI 259
Query: 389 HDEMSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVA 568
+E S T+ + D+I+Y DK KNR F F+EY +HK AA AR++++S +++WG
Sbjct: 260 LEEFSKVTEGLTDVILYHQPDDKKKNRSFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGT 319
Query: 569 VDWAEPERKVEDEIMSKVKILYVRNLMLTTTENIIYLEFSQHIDDPQEIVKVKKIDDFAF 748
V+WA+P + E+M+KVK+L+VRNL T TE I+ FSQ ++ +VKK+ D+AF
Sbjct: 320 VEWADPIEDPDPEVMAKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKLKDYAF 375
Query: 749 VHFKSREQAEIVKNKTHGISLEGSTIEVHFAKPVNKIDQQQK 874
+HF R+ A + +G LEG IE+ FAKP ++ +++K
Sbjct: 376 IHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQKRKERK 417
>sp|O43390|HNRPR_HUMAN Heterogeneous nuclear ribonucleoprotein R (hnRNP R)
Length = 633
Score = 233 bits (593), Expect = 7e-61
Identities = 120/276 (43%), Positives = 181/276 (65%), Gaps = 4/276 (1%)
Frame = +2
Query: 41 GQRRCG--PPEN-WSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETET 211
GQR+ G PP++ +S PG G E+F+ KIP+D +E EL+P+ + G I+ RLMM+ +
Sbjct: 143 GQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLS 202
Query: 212 N-HRGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEI 388
+RG+ F + E A+ AV ++++I+ +LGVC SV N RLFVG IPK KTK I
Sbjct: 203 GQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENI 262
Query: 389 HDEMSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVA 568
+E S T+ +VD+I+Y DK KNRGF F+EY +HK+AA AR++++S +++WG V
Sbjct: 263 LEEFSKVTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVT 322
Query: 569 VDWAEPERKVEDEIMSKVKILYVRNLMLTTTENIIYLEFSQHIDDPQEIVKVKKIDDFAF 748
V+WA+P + + E+M+KVK+L+VRNL T TE I+ FS+ ++ +VKK+ D+AF
Sbjct: 323 VEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEF----GKLERVKKLKDYAF 378
Query: 749 VHFKSREQAEIVKNKTHGISLEGSTIEVHFAKPVNK 856
VHF+ R A ++ +G +EG IE+ AKP +K
Sbjct: 379 VHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDK 414
>sp|Q6VY05|DND1_MOUSE Dead end protein homolog 1 (RNA-binding motif, single-stranded
interacting protein 4)
Length = 352
Score = 120 bits (300), Expect = 7e-27
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 1/186 (0%)
Frame = +2
Query: 41 GQRRCG-PPENWSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNH 217
GQR+ G PP W P G E++I ++P+D +E +LIP+ + +G +Y FRLMM +
Sbjct: 38 GQRKYGGPPPGWVGSPPPSGSEVYIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLN 97
Query: 218 RGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEIHDE 397
RGF + Y++ A+ A+ L+N Q++ + L VC S + C L V G+P + +
Sbjct: 98 RGFAYARYSSRRGAQAAIATLHNHQLRPSCQLLVCRSTEKCELTVDGLPLSLNRRALLLA 157
Query: 398 MSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDW 577
+ F + + ++ PS A ++++ H+AAA+A+K ++ +L G+ VAV+W
Sbjct: 158 LQPFGPCLQETLLLPSPGSAPSQ--IALLKFSTHRAAAMAKKALVEGQSRLCGEQVAVEW 215
Query: 578 AEPERK 595
+P+ K
Sbjct: 216 LKPDLK 221
>sp|Q8IYX4|DND1_HUMAN Dead end protein homolog 1 (RNA-binding motif, single-stranded
interacting protein 4)
Length = 353
Score = 115 bits (288), Expect = 2e-25
Identities = 60/186 (32%), Positives = 103/186 (55%), Gaps = 1/186 (0%)
Frame = +2
Query: 41 GQRRCG-PPENWSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNH 217
GQR+ G PP W P G E+FI ++P+D +E +LIP+ + +G +Y FRLMM +
Sbjct: 38 GQRKYGGPPPGWVGSPPPAGSEVFIGRLPQDVYEHQLIPLFQRVGRLYEFRLMMTFSGLN 97
Query: 218 RGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEIHDE 397
RGF + Y++ A+ A+ L+N ++ + L VC S + C L V G+P T+ +
Sbjct: 98 RGFAYARYSSRRGAQAAIATLHNHPLRPSCPLLVCRSTEKCELSVDGLPPNLTRSALLLA 157
Query: 398 MSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDW 577
+ + + + PS A +++++H+AAA+A+K ++ L G+ VAV+W
Sbjct: 158 LQPLGPGLQEARLLPSPGPAPGQ--IALLKFSSHRAAAMAKKALVEGQSHLCGEQVAVEW 215
Query: 578 AEPERK 595
+P+ K
Sbjct: 216 LKPDLK 221
>sp|Q6DCB7|DND1_XENLA Dead end protein homolog 1
Length = 371
Score = 115 bits (288), Expect = 2e-25
Identities = 71/255 (27%), Positives = 127/255 (49%), Gaps = 16/255 (6%)
Frame = +2
Query: 41 GQRRCG-PPENWSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNH 217
GQR+ G PP W P G E+FI KIP+D +E +LIP+ + +G++Y FRLMM +
Sbjct: 57 GQRKYGGPPPGWIGNAPVSGSEVFIGKIPQDIYEDKLIPLFQSVGKLYEFRLMMTFSGLN 116
Query: 218 RGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEIHDE 397
RGF + Y + A A++ LN F+I K + VC S + L + G+P + + +
Sbjct: 117 RGFAYARYISRRQAISAIMSLNGFEITKGCCIVVCRSTEKSELALDGLPGNFDENMLKNV 176
Query: 398 MSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDW 577
+ T V I ++PS +++ A V+Y +H+AAA+A+K + L G + V+W
Sbjct: 177 LDEVTSGVSSISLHPSPT--KESQVLAVVKYDSHRAAAMAKKTLCEGSPILPGLPLTVNW 234
Query: 578 AEPERK---------VEDEIMSKVKILYV------RNLMLTTTENIIYLEFSQHIDDPQE 712
+ + + + + +S + +LY + +L+ + L + P
Sbjct: 235 LKTDMRQKLRSTDKLQQTKDLSPLPLLYTDRPDLPKETLLSAVGCLNMLCQEMKLGRPVF 294
Query: 713 IVKVKKIDDFAFVHF 757
++K+ + F ++ F
Sbjct: 295 LIKLFSVTSFGWIRF 309
>sp|Q7T1H5|DND1_BRARE Dead end protein 1
Length = 411
Score = 114 bits (285), Expect = 4e-25
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 3/191 (1%)
Frame = +2
Query: 41 GQRRCG-PPENWSDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNH 217
GQR+ G PP W P PG GCE+FI++IP D +E LIP+ + IG IY FRLMM
Sbjct: 40 GQRKYGGPPPGWQGPAPGSGCEVFISQIPNDVYEDRLIPLFQSIGTIYEFRLMMNFSGQT 99
Query: 218 RGFGFCLYTTHETAKRAVLKLNNFQIKKNWYLGVCFSVDNCRLFVGGIPKLKTKLEIHDE 397
RGF + Y TA AV L+ +++ + L V S + +L +G +P + ++
Sbjct: 100 RGFAYAKYGDPLTASAAVTTLHQYRLPEGGCLTVRRSTEKRQLRLGDLPVSMNESKLLMV 159
Query: 398 MSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDW 577
+ +D V D+++ P A V YT+H AA++A+K ++ +G ++ V W
Sbjct: 160 LQMLSDGVEDVLLKPPG--PKGKEVVALVNYTSHYAASMAKKVLVEAFRNRYGISITVRW 217
Query: 578 A--EPERKVED 604
++VED
Sbjct: 218 TSFSKSKRVED 228
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 (Poly(A)-binding protein 5) (PABP
5)
Length = 668
Score = 58.2 bits (139), Expect = 3e-08
Identities = 67/272 (24%), Positives = 113/272 (41%), Gaps = 29/272 (10%)
Frame = +2
Query: 74 SDPLPGKGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNHRGFGFCLYTTHE 253
S L GKG +FI + K L G I + ++ M+ +G+GF + E
Sbjct: 125 STRLSGKG-NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEE 183
Query: 254 TAKRAVLKLNNFQIK-KNWYLG-VCFSVDNCR-----------LFVGGIPKLKTKLEIHD 394
TA+ A+ KLN + K ++G D R ++V +PK T E+
Sbjct: 184 TAQAAIDKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKK 243
Query: 395 EMSNFTDNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVD 574
+ D +++ + + +R F FV + + +AAA+A +KM NGI L + V
Sbjct: 244 TFGKYGDISSAVVMKDQSGN---SRSFGFVNFVSPEAAAVAVEKM--NGISLGEDVLYVG 298
Query: 575 WA--------EPERKVEDEIMSKVKILYVRNLMLTTTENIIYLEFSQHIDDPQEIVKVKK 730
A E RK E E +S+ + L NL L ++ + E + + V K
Sbjct: 299 RAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCK 358
Query: 731 I--------DDFAFVHFKSREQAEIVKNKTHG 802
+ F FV + + E+A + + +G
Sbjct: 359 VMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG 390
Score = 47.0 bits (110), Expect = 7e-05
Identities = 55/272 (20%), Positives = 114/272 (41%), Gaps = 14/272 (5%)
Frame = +2
Query: 104 IFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNHRGFGFCLYTTHETAKRAVLKLN 283
+++ + E L+ + ++ ++ R+ + G+ + + E A RA+ LN
Sbjct: 47 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMESLN 106
Query: 284 NFQIKKNWYLGVCFSVDNC-------RLFVGGIPKLKTKLEIHDEMSNFTDNVVDIIVYP 442
I+ + + D +F+ + +++ S+F I+
Sbjct: 107 YAPIRDRPIRIMLSNRDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGT----ILSCK 162
Query: 443 SAADK-HKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDW---AEPERKVEDEI 610
A D +++G+ FV++ + A A K+ NG+ L + V V + + E
Sbjct: 163 VAMDVVGRSKGYGFVQFEKEETAQAAIDKL--NGMLLNDKQVFVGHFVRRQDRARSESGA 220
Query: 611 MSKVKILYVRNLMLTTTENIIYLEFSQHIDDPQEIVKVKKIDD---FAFVHFKSREQAEI 781
+ +YV+NL T++ + F ++ D +V + + F FV+F S E A +
Sbjct: 221 VPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAV 280
Query: 782 VKNKTHGISLEGSTIEVHFAKPVNKIDQQQKL 877
K +GISL + V A+ K D++++L
Sbjct: 281 AVEKMNGISLGEDVLYVGRAQ--KKSDREEEL 310
>sp|P20397|NUCL_XENLA Nucleolin (Protein C23)
Length = 651
Score = 56.2 bits (134), Expect = 1e-07
Identities = 68/269 (25%), Positives = 112/269 (41%), Gaps = 18/269 (6%)
Frame = +2
Query: 92 KGCEIFIAKIPKDYFEKELIPILREIGEIYTFRLMMETETNHRGFGFCLYTTHETAKRAV 271
+G IFI + EL LRE + N + FG+ +++ E ++A
Sbjct: 231 EGLSIFIGNLNSTKEFDELKDALREFFSKKNLTIQDIRIGNSKKFGYVDFSSEEEVEKA- 289
Query: 272 LKLNNFQI-------------KKNWYLGVCFSVDNCRLFVGGIPKLKTKLEIHDEMSNFT 412
LKL +I KN D+ LFV IP T E+ + N
Sbjct: 290 LKLTGKKILGTEVKIEKAMAFDKNKTAENKKERDSRTLFVKNIPYSTTVEELQEIFENAK 349
Query: 413 DNVVDIIVYPSAADKHKNRGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDWAEPER 592
D I P+ D N+G A+VE++N A A ++ G ++ G+++ VD+ +
Sbjct: 350 D-----IRIPTGKDG-SNKGIAYVEFSNEDEANKALEE--KQGAEIEGRSIFVDFTGEKS 401
Query: 593 KVEDEIM---SKVKILYVRNLMLTTTENII--YLEFSQHIDDPQEIVKVKKIDDFAFVHF 757
+ K+L V NL + TE+ + E + I PQ + K FAF+ F
Sbjct: 402 QNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFEKATSIRIPQNQGRAK---GFAFIEF 458
Query: 758 KSREQAEIVKNKTHGISLEGSTIEVHFAK 844
S E A+ + + +EG +I + F++
Sbjct: 459 SSAEDAKDAMDSCNNTEIEGRSIRLEFSQ 487
Score = 38.9 bits (89), Expect = 0.019
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Frame = +2
Query: 467 RGFAFVEYTNHKAAAIARKKMISNGIQLWGQTVAVDWAE---PERKVEDEIMSKVKILYV 637
+GFAF+E+++ + A A N ++ G+++ +++++ P+ ++ K L+V
Sbjct: 451 KGFAFIEFSSAEDAKDAMDSC--NNTEIEGRSIRLEFSQGGGPQGGGRGG-SAQSKTLFV 507
Query: 638 RNLMLTTTENIIYLEFSQHIDDPQEIVKVKKID---DFAFVHFKSREQAEIVKNKTHGIS 808
R L TTE + F ++ IV + F FV F + E A+ K
Sbjct: 508 RGLSEDTTEETLKEAFDGSVN--ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMEDGE 565
Query: 809 LEGSTIEVHFAKP 847
++G+ + + FAKP
Sbjct: 566 IDGNKVTLDFAKP 578
Score = 36.6 bits (83), Expect = 0.095
Identities = 40/156 (25%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Frame = +2
Query: 158 LREIGEIYTFRLMMETETNHRGFGFCLYTTHETAKRAVLKLNNFQIKKNWYL-------- 313
LRE+ E T + + + +GF F +++ E AK A+ NN +I+
Sbjct: 431 LREVFEKATSIRIPQNQGRAKGFAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFSQGGG 490
Query: 314 ----GVCFSVDNCRLFVGGIPKLKTKLEIHDEMSNFTDNVVDIIVYPSAADKHKNRGFAF 481
G S + LFV G+ + T+ + + F +V IV + D ++GF F
Sbjct: 491 PQGGGRGGSAQSKTLFVRGLSEDTTEETLKEA---FDGSVNARIV--TDRDTGASKGFGF 545
Query: 482 VEYTNHKAAAIARKKMISNGIQLWGQTVAVDWAEPE 589
V+++ + A A++ M I G V +D+A+P+
Sbjct: 546 VDFSTAEDAKAAKEAMEDGEID--GNKVTLDFAKPK 579
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,405,592
Number of Sequences: 369166
Number of extensions: 2106243
Number of successful extensions: 5688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5599
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8790245790
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)