Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_I22
(933 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolo... 223 5e-58
sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolo... 222 1e-57
sp|P41889|CUT9_SCHPO 20S cyclosome/APC complex protein cut9... 152 1e-36
sp|P09798|CDC16_YEAST Anaphase promoting complex subunit CD... 139 1e-32
sp|Q13099|IFT88_HUMAN Intraflagellar transport 88 homolog (... 55 3e-07
sp|P38042|CDC27_YEAST Anaphase promoting complex subunit CD... 55 3e-07
sp|O94556|CUT23_SCHPO 20S cyclosome/APC complex protein cut... 54 5e-07
sp|Q58208|Y798_METJA Hypothetical protein MJ0798 53 1e-06
sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--pepti... 51 5e-06
sp|Q58823|YE28_METJA Hypothetical protein MJ1428 50 9e-06
>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog (Anaphase promoting complex
subunit 6) (APC6) (Cyclosome subunit 6)
Length = 620
Score = 223 bits (569), Expect = 5e-58
Identities = 109/299 (36%), Positives = 185/299 (61%), Gaps = 2/299 (0%)
Frame = +1
Query: 31 LDEHYSNILNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFS 210
L E+ +++ A R+Y N FK Y+LT ++++ DP + NC+ +H+ L EL NELF
Sbjct: 227 LQENLDVVVSLAERHYYNCDFKMCYKLTSTVMEKDPFHANCLPVHIGTLVELNKANELFY 286
Query: 211 FASGLIDNYPDKKESWYAIGCYSLVTGNYNLALQQFI-KATEIEKFFGYAWLAIGHTYSI 387
+ L+D YP SW+A+GCY L+ G+ N ++++ KAT +EK +G AW+A GH++++
Sbjct: 287 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 346
Query: 388 QKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWN 567
+ + DQA AAY +A Q ++G H+P+LYI LEY L NN+ L+ + +A+ + DP+ +
Sbjct: 347 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFGQALSIAPEDPFVIH 406
Query: 568 EKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLS-EFWEPLFNNIGHCFLKLGDYDKSLD 744
E G ++F++ + + K+FL+A E K N ++ + WEPL NN+GH KL Y ++LD
Sbjct: 407 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 466
Query: 745 FFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLKTLIKL 921
+ R+AL P N +T +++ ++ G+ A +Y LG+ ++ FS +L I++
Sbjct: 467 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 525
>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog (CDC16Hs) (Anaphase promoting
complex subunit 6) (APC6) (Cyclosome subunit 6)
Length = 620
Score = 222 bits (565), Expect = 1e-57
Identities = 108/299 (36%), Positives = 184/299 (61%), Gaps = 2/299 (0%)
Frame = +1
Query: 31 LDEHYSNILNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFS 210
L E+ +++ A R+Y N FK Y+LT +++ DP + +C+ +H+ L EL NELF
Sbjct: 227 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFY 286
Query: 211 FASGLIDNYPDKKESWYAIGCYSLVTGNYNLALQQFI-KATEIEKFFGYAWLAIGHTYSI 387
+ L+D YP SW+A+GCY L+ G+ N ++++ KAT +EK +G AW+A GH++++
Sbjct: 287 LSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV 346
Query: 388 QKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWN 567
+ + DQA AAY +A Q ++G H+P+LYI LEY L NN+ L+ + +A+ + DP+ +
Sbjct: 347 ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMH 406
Query: 568 EKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLS-EFWEPLFNNIGHCFLKLGDYDKSLD 744
E G ++F++ + + K+FL+A E K N ++ + WEPL NN+GH KL Y ++LD
Sbjct: 407 EVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALD 466
Query: 745 FFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLKTLIKL 921
+ R+AL P N +T +++ ++ G+ A +Y LG+ ++ FS +L I++
Sbjct: 467 YHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEM 525
>sp|P41889|CUT9_SCHPO 20S cyclosome/APC complex protein cut9 (Cell untimely torn protein 9)
Length = 671
Score = 152 bits (384), Expect = 1e-36
Identities = 87/302 (28%), Positives = 156/302 (51%), Gaps = 1/302 (0%)
Frame = +1
Query: 25 NILDEHYSNILNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNEL 204
N L++ +L A + ++F +T IL+ DP+N + LH+A L E N+L
Sbjct: 299 NGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL 358
Query: 205 FSFASGLIDNYPDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYS 384
+ ++ L+D +P+K +W A+G Y L + A + F K++ ++ FG AW+ H+++
Sbjct: 359 YLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA 418
Query: 385 IQKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFW 564
I+ + DQA +AY +A + +G+H+P L++ +++ N L+ YLQ + + +DP
Sbjct: 419 IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLL 478
Query: 565 NEKGYLSFKHKNYSDSLKFFLNA-YEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSL 741
NE G ++F + ++ F NA KK + N + W + N+GH + KL YD ++
Sbjct: 479 NELGVVAFNKSDMQTAINHFQNALLLVKKTQSN--EKPWAATWANLGHAYRKLKMYDAAI 536
Query: 742 DFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLKTLIKL 921
D + L N+ ++AL Y K A +L L I N + + LLK ++
Sbjct: 537 DALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE 596
Query: 922 NA 927
N+
Sbjct: 597 NS 598
>sp|P09798|CDC16_YEAST Anaphase promoting complex subunit CDC16 (Cell division control
protein 16)
Length = 840
Score = 139 bits (350), Expect = 1e-32
Identities = 77/283 (27%), Positives = 143/283 (50%)
Frame = +1
Query: 76 YNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFASGLIDNYPDKKES 255
Y KF + EL +++L++D N N + ++ L EL N+LF + L + +P +
Sbjct: 474 YTQCKFNECLELCETVLENDEFNTNILPAYIGCLYELSNKNKLFLLSHRLAETFPKSAIT 533
Query: 256 WYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQARAAYCSANQ 435
W+++ Y + + A + + K++ ++ F AWL HTY+++ + DQA AY +A++
Sbjct: 534 WFSVATYYMSLDRISEAQKYYSKSSILDPSFAAAWLGFAHTYALEGEQDQALTAYSTASR 593
Query: 436 AIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSDSL 615
G H+P L++ +++ N+ L+ +Y A + +DP NE G + FK + +
Sbjct: 594 FFPGMHLPKLFLGMQFMAMNSLNLAESYFVLAYDICPNDPLVLNEMGVMYFKKNEFVKAK 653
Query: 616 KFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLN 795
K+ A E K + + S + N+GH + KL + + ++ FR L K N
Sbjct: 654 KYLKKALEVVK-DLDPSSRTTISIQLNLGHTYRKLNENEIAIKCFRCVLEKNDKNSEIHC 712
Query: 796 SLALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLKTLIKLN 924
SL Y + + +A ++L + L + NN + LLK ++LN
Sbjct: 713 SLGYLYLKTKKLQKAIDHLHKSLYLKPNNSSATALLKNALELN 755
>sp|Q13099|IFT88_HUMAN Intraflagellar transport 88 homolog (Tetratricopeptide repeat protein
10) (TPR repeat protein 10) (Recessive polycystic kidney
disease protein Tg737 homolog)
Length = 824
Score = 55.1 bits (131), Expect = 3e-07
Identities = 63/308 (20%), Positives = 115/308 (37%), Gaps = 39/308 (12%)
Frame = +1
Query: 55 LNSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAIL-------------TELKLN 195
+N A Y + +A E+ K + K D + +++ L ++ +N
Sbjct: 419 INKAVTYLRQKDYNQAVEILKVLEKKDNRVKSAAATNLSALYYMGKDFAQASSYADIAVN 478
Query: 196 NELFSFASGLIDNYPDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGH 375
++ ++ A+ +K + +A G Y Y AL+ TE A IG
Sbjct: 479 SDRYNPAA-----LTNKGNTVFANGDYEKAAEFYKEALRNDSSCTE-------ALYNIGL 526
Query: 376 TYSIQKKSDQARAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDP 555
TY + D+A + + +R S L IA Y L N +I +L + + V DP
Sbjct: 527 TYEKLNRLDEALDCFLKLHAILRNSAEVLYQIANIYELMENPSQAIEWLMQVVSVIPTDP 586
Query: 556 YFWNEKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSL---------SEFWEPLFN----- 693
++ G L + + S + +++ +Y + ++FWE
Sbjct: 587 QVLSKLGELYDREGDKSQAFQYYYESYRYFPCNIEVIEWLGAYYIDTQFWEKAIQYFERA 646
Query: 694 ------------NIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSE 837
+ CF + G+Y K+LD ++ K P N L L G + +
Sbjct: 647 SLIQPTQVKWQLMVASCFRRSGNYQKALDTYKDTHRKFPENVECLRFLVRLCTDLG-LKD 705
Query: 838 AQNYLERV 861
AQ Y ++
Sbjct: 706 AQEYARKL 713
Score = 37.4 bits (85), Expect = 0.061
Identities = 28/136 (20%), Positives = 61/136 (44%), Gaps = 2/136 (1%)
Frame = +1
Query: 469 IALEYSLDNNTCLSINYLQEAMK--VGSHDPYFWNEKGYLSFKHKNYSDSLKFFLNAYEA 642
+A +YS++ ++N Q +K + S+ G + K +NYS ++KF+ A +
Sbjct: 203 LASQYSVNEMYAEALNTYQVIVKNKMFSNAGILKMNMGNIYLKQRNYSKAIKFYRMALDQ 262
Query: 643 KKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARK 822
+ + + NIG F++ G Y +++ + + PN N L + Y
Sbjct: 263 VPSVNKQMRI---KIMQNIGVTFIQAGQYSDAINSYEHIMSMAPNLKAGYN-LTICYFAI 318
Query: 823 GDVSEAQNYLERVLGI 870
GD + + ++++ +
Sbjct: 319 GDREKMKKAFQKLITV 334
Score = 35.0 bits (79), Expect = 0.30
Identities = 17/67 (25%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = +1
Query: 694 NIGHCFLKLGDYDKSLDFFRKALGKKPN-----NPTTLNSLALAYARKGDVSEAQNYLER 858
N+G+ +LK +Y K++ F+R AL + P+ + ++ + + + G S+A N E
Sbjct: 238 NMGNIYLKQRNYSKAIKFYRMALDQVPSVNKQMRIKIMQNIGVTFIQAGQYSDAINSYEH 297
Query: 859 VLGIDDN 879
++ + N
Sbjct: 298 IMSMAPN 304
>sp|P38042|CDC27_YEAST Anaphase promoting complex subunit CDC27 (Cell division control
protein 27) (Anaphase promoting complex subunit 3)
Length = 758
Score = 55.1 bits (131), Expect = 3e-07
Identities = 26/74 (35%), Positives = 43/74 (58%)
Frame = +1
Query: 208 SFASGLIDNYPDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSI 387
+ A+GL+D P+K E+W IG + +++ A++ F KAT+++ F YA+ GH +S
Sbjct: 527 NLANGLMDTMPNKPETWCCIGNLLSLQKDHDAAIKAFEKATQLDPNFAYAYTLQGHEHSS 586
Query: 388 QKKSDQARAAYCSA 429
SD A+ Y A
Sbjct: 587 NDSSDSAKTCYRKA 600
>sp|O94556|CUT23_SCHPO 20S cyclosome/APC complex protein cut23 (Anaphase promoting factor
component 8) (Cell untimely torn protein 23)
Length = 565
Score = 54.3 bits (129), Expect = 5e-07
Identities = 60/286 (20%), Positives = 122/286 (42%), Gaps = 7/286 (2%)
Frame = +1
Query: 76 YNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFA--SGLIDNYPDKK 249
Y++ F +A L ++IL +DP+ + + + +L L+ ++L A + ID + +
Sbjct: 281 YDSRDFDEAESLFENILTNDPYRLDDMDTYSNVLFVLENKSKLGFLAQVASSIDKF--RP 338
Query: 250 ESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQARAAYCSA 429
E+ IG Y + + A+ F +A ++ + + AW +GH Y K + A +Y A
Sbjct: 339 ETCSIIGNYYSLLSEHEKAVTYFKRALQLNRNYLSAWTLMGHEYVELKNTHAAIESYRLA 398
Query: 430 NQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSD 609
R + + Y + + ++ Y Q A + +D W G K +
Sbjct: 399 VDVNRKDYRAWYGLGQTYEVLDMHFYALYYFQRATALRPYDQRMWQALGNCYEKIDRPQE 458
Query: 610 SLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPN--NP 783
++K + A + + L +G+ + +L D + + +++ + + +P
Sbjct: 459 AIKSYKRALLGSQTNSSILV--------RLGNLYEELQDLNSAASMYKQCIKTEETEISP 510
Query: 784 TTLNS---LALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLKTL 912
T+ + LA K + EA+ YL VL D ++ LL+ L
Sbjct: 511 ETIKARIWLARWELGKKNYREAELYLSEVLNGDLELEEAKALLREL 556
>sp|Q58208|Y798_METJA Hypothetical protein MJ0798
Length = 334
Score = 53.1 bits (126), Expect = 1e-06
Identities = 39/189 (20%), Positives = 88/189 (46%)
Frame = +1
Query: 298 NLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQARAAYCSANQAIRGSHIPLLYIAL 477
+LA++ F KA+E ++ A +G +Y + + + Y + + + L
Sbjct: 152 DLAIKYFEKASEKDRNNYKALFGLGKSYYLMSDNKNS-IKYFEKVLELNPNDVEALEYLG 210
Query: 478 EYSLDNNTCLSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSDSLKFFLNAYEAKKNEF 657
E + + +INY ++A+++ D + + FK K Y +LK+F A + N F
Sbjct: 211 ELYYEEDCEKAINYFKKALELKPDDIDLILKVAFTYFKLKKYKHALKYFEKALKLNPNVF 270
Query: 658 NSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSE 837
E ++ ++G ++ LG+ +K+++ F K + +AL Y G++ +
Sbjct: 271 E-----LEQIYESMGRIYIYLGEDEKAIECFEKLKEINLYHYEIYEIIALTYEEVGNIEK 325
Query: 838 AQNYLERVL 864
A+ + ++++
Sbjct: 326 AKEFYKKLV 334
Score = 40.0 bits (92), Expect = 0.009
Identities = 29/113 (25%), Positives = 51/113 (45%)
Frame = +1
Query: 568 EKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDF 747
+KGY K ++K+F A E +N + +L +G + + D S+ +
Sbjct: 140 KKGYALLKLYKRDLAIKYFEKASEKDRNNYKALF--------GLGKSYYLMSDNKNSIKY 191
Query: 748 FRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLK 906
F K L PN+ L L Y + D +A NY ++ L + +++ L+LK
Sbjct: 192 FEKVLELNPNDVEALEYLGELYYEE-DCEKAINYFKKALELKPDDI--DLILK 241
Score = 39.7 bits (91), Expect = 0.012
Identities = 26/101 (25%), Positives = 46/101 (45%)
Frame = +1
Query: 577 YLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRK 756
YL +KN S+K+F E N+ +L E + D +K++++F+K
Sbjct: 180 YLMSDNKN---SIKYFEKVLELNPNDVEALEYLGELYYEE---------DCEKAINYFKK 227
Query: 757 ALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDN 879
AL KP++ + +A Y + A Y E+ L ++ N
Sbjct: 228 ALELKPDDIDLILKVAFTYFKLKKYKHALKYFEKALKLNPN 268
>sp|O82039|SPY_PETHY Probable UDP-N-acetylglucosamine--peptide
N-acetylglucosaminyltransferase SPINDLY (PhSPY)
Length = 932
Score = 50.8 bits (120), Expect = 5e-06
Identities = 63/282 (22%), Positives = 117/282 (41%), Gaps = 18/282 (6%)
Frame = +1
Query: 73 YYNNAKFKKAYELTKSILKDDPHNPNCITLHVAILTELKLNNELFSFASGLIDNYPD--K 246
Y + + +A E + LK DP +LT++ + +L + I Y + K
Sbjct: 126 YKDEGRLVEAAESYQKALKADPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYEAIK 185
Query: 247 KESWYAIGCYSLVTG-----NYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQAR 411
+S YA Y+L Y++AL + KA + A+ +G Y + + A
Sbjct: 186 IDSHYAPAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAI 245
Query: 412 AAY-----CSANQAIRGSH--IPLLYIALEYSLDNNTCLSINYLQEAMKVGSHDPYFWNE 570
A Y S N I ++ I L + + L+ + + Y ++A+ Y W+
Sbjct: 246 ACYERCLAVSPNFEIAKNNMAIALTDLGTKVKLEGDINQGVAYYKKALY------YNWHY 299
Query: 571 KGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFWEP----LFNNIGHCFLKLGDYDKS 738
+ Y + LKF + F L+ + P NN+G + + DK+
Sbjct: 300 ADAMYNLGVAYGEMLKFDMAIV------FYELAFHFNPHCAEACNNLGVIYKDRDNLDKA 353
Query: 739 LDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVL 864
++ ++ AL KPN +LN+L + Y +G + A + +E+ +
Sbjct: 354 VECYQMALTIKPNFSQSLNNLGVVYTVQGKMDAAASMIEKAI 395
Score = 41.6 bits (96), Expect = 0.003
Identities = 42/187 (22%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Frame = +1
Query: 334 IEKFFGYAWLAIGHTYSIQKKSDQARAAYCSANQAIR---GSHIPLLYIALEYSLDNNTC 504
++K G IG +Q ++ R A+ S +AI+ + L + + Y +
Sbjct: 75 LQKDSGSIESLIGKGICLQMQN-MGRLAFESFAEAIKLDPQNACALTHCGILYKDEGRLV 133
Query: 505 LSINYLQEAMKVGSHDPYFWNEKGYLSFKHKNYSDSLKFFLNAYEA--KKNEFNSLSEFW 678
+ Q+A+K DP + L+ + SLK N+ E K E + +
Sbjct: 134 EAAESYQKALKA---DPSYKPAAECLAIVLTDIGTSLKLAGNSQEGIQKYYEAIKIDSHY 190
Query: 679 EPLFNNIGHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLER 858
P + N+G + ++ YD +L+ + KA ++P ++ + Y +GD+ A ER
Sbjct: 191 APAYYNLGVVYSEMMQYDMALNCYEKAAIERPMYAEAYCNMGVIYKNRGDLESAIACYER 250
Query: 859 VLGIDDN 879
L + N
Sbjct: 251 CLAVSPN 257
>sp|Q58823|YE28_METJA Hypothetical protein MJ1428
Length = 567
Score = 50.1 bits (118), Expect = 9e-06
Identities = 68/299 (22%), Positives = 112/299 (37%), Gaps = 30/299 (10%)
Frame = +1
Query: 58 NSATRYYNNAKFKKAYELTKSILKDDPHNPNCITLHVAI---LTELKLNNELFSFASGLI 228
N A Y+ K+ A E LK P N L I E+ L + AS I
Sbjct: 53 NLAYALYHLEKYDSALEAINEALKISPSNIYFAYLKGLIHYKRGEIILAYKYLKKASEKI 112
Query: 229 DNYPDKKESWYAIGCYSLVTGNYNLALQQFIKATEIEKFFGYAWLAIGHTYSIQKKSDQA 408
N +E + +G S+ G Y AL+ ++K+ ++ S
Sbjct: 113 KN----EELFEILGDISVKYGRYEEALKYYLKSYKMAN------------------SKNL 150
Query: 409 RAAYCSANQAIRGSHIPLLYIALEYSLDNNTCLSINYLQEAMK--VGSHDPYFWNEKGYL 582
A + + + I Y A L N + E M+ V + + Y G
Sbjct: 151 NALFKAGKIYLLFGDIDKAYDAFNEILQQNPSHECKKIVECMENVVNAINSYEDLNNGLT 210
Query: 583 SFKHKNYSDSLKFFLNAYEAKKNEFNS------LSEFWEP-------------LFNNI-- 699
K+K+Y +LK F + +N S ++E +E +FN
Sbjct: 211 MIKNKDYIGALKIFNKVLQIDENSDISYYYKSVIAEIFEEYKKALEYIDKSISIFNRSLY 270
Query: 700 ----GHCFLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVL 864
G KLGD + +++ + KA+ NP LA+ Y RKG++ ++ N+ ++VL
Sbjct: 271 YAKKGDILYKLGDEEGAIEAYNKAIKLNSQNPYAYFGLAILYYRKGELEKSSNFFDKVL 329
Score = 41.2 bits (95), Expect = 0.004
Identities = 29/112 (25%), Positives = 54/112 (48%)
Frame = +1
Query: 595 KNYSDSLKFFLNAYEAKKNEFNSLSEFWEPLFNNIGHCFLKLGDYDKSLDFFRKALGKKP 774
K Y +++K+ N + + S +W G+ + KLG+Y + + F AL P
Sbjct: 360 KYYHEAMKYVDNLINLENS-----SRWWYVK----GYIYYKLGNYKDAYESFMNALRVNP 410
Query: 775 NNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDNNLFSQLLLKTLIKLNAK 930
+ +TL SLA+ + G + EA ++L I ++ F+ + L KL ++
Sbjct: 411 KDISTLKSLAIVLEKSGKIDEAITTYTKILKIVNSLQFTCEIDNILEKLRSR 462
Score = 33.1 bits (74), Expect = 1.1
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 709 FLKLGDYDKSLDFFRKALGKKPNNPTTLNSLALAYARKGDVSEAQNYLERVLGIDDNNLF 888
+L G YDK+++ + KAL KK NP +LA A A + L I +N++
Sbjct: 24 YLDEGIYDKAVECYLKALEKKNTNPIDWFNLAYALYHLEKYDSALEAINEALKISPSNIY 83
Score = 33.1 bits (74), Expect = 1.1
Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Frame = +1
Query: 517 YLQEAMKVGSH------DPYFWNEKGYLSFKHKNYSDSLKFFLNAYEAKKNEFNSLSEFW 678
Y EAMK + +W KGY+ +K NY D+ + F+NA + ++L
Sbjct: 361 YYHEAMKYVDNLINLENSSRWWYVKGYIYYKLGNYKDAYESFMNALRVNPKDISTL---- 416
Query: 679 EPLFNNIGHCFLKLGDYDKSLDFFRKAL 762
++ K G D+++ + K L
Sbjct: 417 ----KSLAIVLEKSGKIDEAITTYTKIL 440
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,466,921
Number of Sequences: 369166
Number of extensions: 1816821
Number of successful extensions: 5034
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4606
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4967
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9606826000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)