Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_H05
(522 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associ... 79 5e-15
sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associ... 79 7e-15
sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein associ... 79 7e-15
sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associ... 79 7e-15
sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein associ... 79 7e-15
sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associ... 79 7e-15
sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associat... 77 2e-14
sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein associ... 75 7e-14
sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprote... 72 1e-12
sp|Q10163|YAU8_SCHPO Hypothetical protein C26A3.08 in chrom... 56 5e-08
>sp|Q9PV94|RSMB_CHICK Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 79.3 bits (194), Expect = 5e-15
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS+
Sbjct: 21 LQDGRVFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQPEREEKRVLGLVLLRGENLVSM 80
Query: 185 NVDGPPPTE 211
V+GPPP +
Sbjct: 81 TVEGPPPKD 89
>sp|P14678|RSMB_HUMAN Small nuclear ribonucleoprotein associated proteins B and B'
(snRNP-B) (Sm protein B/B') (Sm-B/Sm-B') (SmB/SmB')
Length = 240
Score = 79.0 bits (193), Expect = 7e-15
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS+
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
Query: 185 NVDGPPPTE 211
V+GPPP +
Sbjct: 81 TVEGPPPKD 89
>sp|P27048|RSMB_MOUSE Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB)
Length = 231
Score = 79.0 bits (193), Expect = 7e-15
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS+
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
Query: 185 NVDGPPPTE 211
V+GPPP +
Sbjct: 81 TVEGPPPKD 89
>sp|P63162|RSMN_HUMAN Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
sp|P63164|RSMN_RAT Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D)
sp|P63163|RSMN_MOUSE Small nuclear ribonucleoprotein associated protein N (snRNP-N) (Sm
protein N) (Sm-N) (SmN) (Sm-D) (Tissue-specific splicing
protein)
Length = 240
Score = 79.0 bits (193), Expect = 7e-15
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS+
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPEREEKRVLGLVLLRGENLVSM 80
Query: 185 NVDGPPPTE 211
V+GPPP +
Sbjct: 81 TVEGPPPKD 89
>sp|Q9TU66|RSMB_MONDO Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 79.0 bits (193), Expect = 7e-15
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS+
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
Query: 185 NVDGPPPTE 211
V+GPPP +
Sbjct: 81 TVEGPPPKD 89
>sp|Q9TU67|RSMB_ERIEU Small nuclear ribonucleoprotein associated protein B' (snRNP-B')
(Sm protein B') (Sm-B') (SmB') (snRPB')
Length = 240
Score = 79.0 bits (193), Expect = 7e-15
Identities = 39/69 (56%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS+
Sbjct: 21 LQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSM 80
Query: 185 NVDGPPPTE 211
V+GPPP +
Sbjct: 81 TVEGPPPKD 89
>sp|P17136|RSMB_RAT Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB) (SM11)
Length = 214
Score = 77.4 bits (189), Expect = 2e-14
Identities = 38/70 (54%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Frame = +2
Query: 5 TLQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVS 181
+LQ+GR +GTFKAFDKHMN+ILCDCDEF LG VL+RGE LVS
Sbjct: 3 SLQNGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVS 62
Query: 182 LNVDGPPPTE 211
+ V+GPPP +
Sbjct: 63 MTVEGPPPKD 72
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein associated protein B (snRNP-B) (Sm
protein B) (Sm-B) (SmB)
Length = 199
Score = 75.5 bits (184), Expect = 7e-14
Identities = 38/70 (54%), Positives = 45/70 (64%), Gaps = 1/70 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQD R +GTFKAFDKHMN+IL DC+EF LGFVL+RGE +VSL
Sbjct: 21 LQDSRTFIGTFKAFDKHMNLILGDCEEFRKIRSKNSKVPEREEKRVLGFVLLRGENIVSL 80
Query: 185 NVDGPPPTED 214
V+GPPP E+
Sbjct: 81 TVEGPPPPEE 90
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein associated protein B
(snRNP-B) (Sm protein B) (Sm-B) (SmB)
Length = 160
Score = 71.6 bits (174), Expect = 1e-12
Identities = 34/72 (47%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Frame = +2
Query: 8 LQDGRQLVGTFKAFDKHMNVILCDCDEF-XXXXXXXXXXXXXXXXXLGFVLIRGEQLVSL 184
LQDGR +G FKAFDKHMN++L +C+E LG VL+RGE +VS+
Sbjct: 21 LQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRILGLVLVRGEHIVSM 80
Query: 185 NVDGPPPTEDSA 220
VDGPPP +D +
Sbjct: 81 TVDGPPPRDDDS 92
>sp|Q10163|YAU8_SCHPO Hypothetical protein C26A3.08 in chromosome I
Length = 147
Score = 56.2 bits (134), Expect = 5e-08
Identities = 30/75 (40%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Frame = +2
Query: 5 TLQDGRQLVGTFKAFDKHMNVILCDCDEF--XXXXXXXXXXXXXXXXXLGFVLIRGEQLV 178
T +DGR VG AFD MN++L DC E+ LG V++RGE +V
Sbjct: 17 TTKDGRTFVGQLLAFDGFMNLVLSDCQEYRHIKKQNVPSNSVYEEKRMLGLVILRGEFIV 76
Query: 179 SLNVDGPPPTEDSAK 223
SL+V GPPP + S +
Sbjct: 77 SLSVQGPPPMDPSMR 91
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,241,319
Number of Sequences: 369166
Number of extensions: 701394
Number of successful extensions: 1996
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1985
length of database: 68,354,980
effective HSP length: 103
effective length of database: 49,327,275
effective search space used: 3452909250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)