Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_G15
(420 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P49154|RS2_URECA 40S ribosomal protein S2 196 2e-50
sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pe... 193 1e-49
sp|P51403|RS2_CAEEL 40S ribosomal protein S2 187 6e-48
sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2 187 1e-47
sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 p... 186 1e-47
sp|P27952|RS2_RAT 40S ribosomal protein S2 >gi|46397787|sp|... 186 1e-47
sp|O18789|RS2_BOVIN 40S ribosomal protein S2 184 5e-47
sp|P46791|RS2_CRIGR 40S ribosomal protein S2 179 2e-45
sp|P49688|RS2_ARATH 40S ribosomal protein S2 175 4e-44
sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 p... 172 3e-43
>sp|P49154|RS2_URECA 40S ribosomal protein S2
Length = 278
Score = 196 bits (497), Expect = 2e-50
Identities = 95/127 (74%), Positives = 105/127 (82%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLSV+PVR+GYWGNK+G HTVPCKVTGKCGSV VRLIPAPRGTGIV
Sbjct: 133 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVLVRLIPAPRGTGIVS 192
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL+MAGI D YTSA GQTATL NFAKATY AI TY YL+PDLW T T++P+
Sbjct: 193 APVPKKLLAMAGIDDCYTSARGQTATLGNFAKATYAAIAATYSYLTPDLWRETVFTKSPY 252
Query: 363 DEHAKFL 383
E+ +L
Sbjct: 253 QEYTDYL 259
>sp|P31009|RS2_DROME 40S ribosomal protein S2 (Strings of pearls protein)
Length = 267
Score = 193 bits (490), Expect = 1e-49
Identities = 93/127 (73%), Positives = 103/127 (81%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLSV+PVR+GYWGNK+G HTVPCKVTGKCGSVSVRLIPAPRGTGIV
Sbjct: 130 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVSVRLIPAPRGTGIVS 189
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL+MAGI+D YTSA G T TL NFAKATY AI +TY YL+PDLW P P+
Sbjct: 190 APVPKKLLTMAGIEDCYTSARGSTGTLGNFAKATYAAIAKTYAYLTPDLWKEMPLGSTPY 249
Query: 363 DEHAKFL 383
++ FL
Sbjct: 250 QAYSDFL 256
>sp|P51403|RS2_CAEEL 40S ribosomal protein S2
Length = 272
Score = 187 bits (476), Expect = 6e-48
Identities = 89/127 (70%), Positives = 103/127 (81%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKL+V+PVR+GYWGNK+G HTVPCKVTGKC SV VRLIPAPRGTGIV
Sbjct: 143 VATAIRGAIVAAKLAVVPVRRGYWGNKIGLPHTVPCKVTGKCASVMVRLIPAPRGTGIVS 202
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL MAGI+D YT+A G TATL NFAKATY A++RTY YL+PDLW ++P+
Sbjct: 203 APVPKKLLHMAGIEDCYTAAKGSTATLGNFAKATYAALQRTYSYLTPDLWKEEALEKSPY 262
Query: 363 DEHAKFL 383
H ++L
Sbjct: 263 QRHHEYL 269
>sp|Q90YS3|RS2_ICTPU 40S ribosomal protein S2
Length = 277
Score = 187 bits (474), Expect = 1e-47
Identities = 92/127 (72%), Positives = 102/127 (80%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLS+IPVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV
Sbjct: 132 VATAIRGAIILAKLSIIPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS 191
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+
Sbjct: 192 APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPY 251
Query: 363 DEHAKFL 383
E L
Sbjct: 252 QEFTDHL 258
>sp|P15880|RS2_HUMAN 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 186 bits (473), Expect = 1e-47
Identities = 91/127 (71%), Positives = 102/127 (80%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLS++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV
Sbjct: 147 VATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS 206
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+
Sbjct: 207 APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPY 266
Query: 363 DEHAKFL 383
E L
Sbjct: 267 QEFTDHL 273
>sp|P27952|RS2_RAT 40S ribosomal protein S2
sp|P25444|RS2_MOUSE 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 293
Score = 186 bits (473), Expect = 1e-47
Identities = 91/127 (71%), Positives = 102/127 (80%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLS++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV
Sbjct: 147 VATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS 206
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+
Sbjct: 207 APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPY 266
Query: 363 DEHAKFL 383
E L
Sbjct: 267 QEFTDHL 273
>sp|O18789|RS2_BOVIN 40S ribosomal protein S2
Length = 286
Score = 184 bits (468), Expect = 5e-47
Identities = 90/127 (70%), Positives = 101/127 (79%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLS++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIP PRGTGIV
Sbjct: 140 VATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPPPRGTGIVS 199
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
APV KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T T++P+
Sbjct: 200 APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPY 259
Query: 363 DEHAKFL 383
E L
Sbjct: 260 QEFTDHL 266
>sp|P46791|RS2_CRIGR 40S ribosomal protein S2
Length = 202
Score = 179 bits (455), Expect = 2e-45
Identities = 87/113 (76%), Positives = 95/113 (84%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLS++PVR+GYWGNK+G HTVPCKVTG+CGSV VRLIPAPRGTGIV
Sbjct: 87 VATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVS 146
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNAT 341
APV KKLL MAGI D YTSA G TATL NFAKAT+ AI +TY YL+PDLW T
Sbjct: 147 APVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKET 199
>sp|P49688|RS2_ARATH 40S ribosomal protein S2
Length = 285
Score = 175 bits (443), Expect = 4e-44
Identities = 80/127 (62%), Positives = 101/127 (79%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAIRGAI AKLSV+PVR+GYWGNK+G HTVPCKVTGKCGSV+VR++PAPRG+GIV
Sbjct: 141 VATAIRGAIILAKLSVVPVRRGYWGNKIGKPHTVPCKVTGKCGSVTVRMVPAPRGSGIVA 200
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
A V KK+L AGI DV+TS+ G T TL NF KAT+ +++TY +L+P+ W T +++P+
Sbjct: 201 ARVPKKVLQFAGIDDVFTSSRGSTKTLGNFVKATFDCLQKTYGFLTPEFWKETRFSRSPY 260
Query: 363 DEHAKFL 383
EH FL
Sbjct: 261 QEHTDFL 267
>sp|P27685|RS2_DICDI 40S ribosomal protein S2 (S4) (LLRep3 protein)
Length = 265
Score = 172 bits (436), Expect = 3e-43
Identities = 82/124 (66%), Positives = 96/124 (77%)
Frame = +3
Query: 3 VATAIRGAITQAKLSVIPVRKGYWGNKLGDTHTVPCKVTGKCGSVSVRLIPAPRGTGIVG 182
VATAI GAI AKLSVIPVR+GYWGNKLG HTVP KVTGKCGSV+VRL+PAPRGTGIV
Sbjct: 134 VATAISGAIVAAKLSVIPVRRGYWGNKLGAPHTVPTKVTGKCGSVAVRLVPAPRGTGIVA 193
Query: 183 APVTKKLLSMAGIQDVYTSANGQTATLENFAKATYMAIRRTYEYLSPDLWNATPNTQNPF 362
A V KKLL AG+ DVYTS+ G+T T+ NF AT+ AI +T+ YL+PDLW + P+
Sbjct: 194 ARVPKKLLQYAGVDDVYTSSRGKTRTMGNFVMATFFAITKTFAYLTPDLWREVKLIKTPY 253
Query: 363 DEHA 374
EH+
Sbjct: 254 QEHS 257
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,089,518
Number of Sequences: 369166
Number of extensions: 998784
Number of successful extensions: 2555
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2508
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2536
length of database: 68,354,980
effective HSP length: 99
effective length of database: 50,066,215
effective search space used: 2002648600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)