Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_G07
(388 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Cont... 30 2.2
sp|Q7VKA1|MUTS_HAEDU DNA mismatch repair protein mutS 30 2.2
sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 (Trac... 29 2.9
sp|Q96RI9|TAAR9_HUMAN Trace amine-associated receptor 9 (Tr... 29 2.9
sp|Q5HV27|SYH_CAMJR Histidyl-tRNA synthetase (Histidine--tR... 28 4.9
sp|P36078|YKI4_YEAST Hypothetical 13.6 kDa protein in MDH1-... 28 4.9
sp|Q9AK84|GCSP_STRCO Glycine dehydrogenase [decarboxylating... 28 6.5
sp|Q923X5|TAA7D_RAT Trace amine-associated receptor 7d (Tra... 28 6.5
sp|P15916|PAP2_FOWPV Cap-specific mRNA (nucleoside-2'-O-)-m... 28 8.4
sp|P31911|HOXQ_RALEU Hydrogenase expression/formation prote... 28 8.4
>sp|Q90508|VIT1_FUNHE Vitellogenin I precursor (VTG I) [Contains: Lipovitellin 1 (LV1);
Phosvitin (PV); Lipovitellin 2 (LV2)]
Length = 1704
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +2
Query: 143 IKEDLNNCPAQLGAYLPPPNTKPKTIMCDTESKNNYEEYVDALTNNK 283
+K D QLG YL PN + + I+ + S +N+ DA+ +K
Sbjct: 1257 VKADKRMVGYQLGFYLDKPNARVQIIVANISSDSNWRICADAVVLSK 1303
>sp|Q7VKA1|MUTS_HAEDU DNA mismatch repair protein mutS
Length = 866
Score = 29.6 bits (65), Expect = 2.2
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 125 PDILLFYRANRYKNN*YEDSRTLVVLL 45
PDILLFYR + YED++ VLL
Sbjct: 23 PDILLFYRMGDFYELFYEDAKKAAVLL 49
>sp|Q923Y5|TAAR6_RAT Trace amine-associated receptor 6 (Trace amine receptor 4) (TaR-4)
Length = 345
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 26 MYANLKPKEQLEFCYPHINYSCTYSPY 106
M +N P L+ CY ++N SC +PY
Sbjct: 1 MGSNSSPPAVLQLCYENVNGSCVKTPY 27
>sp|Q96RI9|TAAR9_HUMAN Trace amine-associated receptor 9 (Trace amine receptor 3) (TaR-3)
Length = 348
Score = 29.3 bits (64), Expect = 2.9
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +2
Query: 26 MYANLKPKEQLEFCYPHINYSCTYSPY 106
M N E +E CY ++N SC +PY
Sbjct: 1 MVNNFSQAEAVELCYKNVNESCIKTPY 27
>sp|Q5HV27|SYH_CAMJR Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
sp|Q9PPF4|SYH_CAMJE Histidyl-tRNA synthetase (Histidine--tRNA ligase) (HisRS)
Length = 408
Score = 28.5 bits (62), Expect = 4.9
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = +2
Query: 212 KTIMCDTESKNNYEEYVDALTNNKCTNCQGPLET 313
+ + C E N E L NN CT+CQ ET
Sbjct: 201 RVLDCKNEHCQNLLENAPLLINNLCTSCQKDFET 234
>sp|P36078|YKI4_YEAST Hypothetical 13.6 kDa protein in MDH1-VMA5 intergenic region
Length = 116
Score = 28.5 bits (62), Expect = 4.9
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Frame = +2
Query: 128 YKAFDIKEDLNNCPAQLGAYLPPPNTKPKTIMCDT-ESKNNYEEYVDALTNNKCTNCQGP 304
Y F+ ++L++ P + L N I+C + + EY D +N C NC+ P
Sbjct: 38 YACFECHQELSSHPLEKYDLLDDANKH--LIICGVCRHEMTFAEYYDYNSNLICPNCRSP 95
Query: 305 LETGVYFKRVCYMQ 346
G Y Q
Sbjct: 96 FNPGCKLHYHLYFQ 109
>sp|Q9AK84|GCSP_STRCO Glycine dehydrogenase [decarboxylating] (Glycine decarboxylase)
(Glycine cleavage system P-protein)
Length = 961
Score = 28.1 bits (61), Expect = 6.5
Identities = 10/40 (25%), Positives = 23/40 (57%)
Frame = +2
Query: 74 HINYSCTYSPYKTTICPVYKAFDIKEDLNNCPAQLGAYLP 193
H++++C + + + V+ AF ++ D+ + A+ G LP
Sbjct: 426 HVSFACDETTTRAQVGGVWHAFGVEGDIESLDAEAGETLP 465
>sp|Q923X5|TAA7D_RAT Trace amine-associated receptor 7d (Trace amine receptor 15)
(TaR-15)
Length = 358
Score = 28.1 bits (61), Expect = 6.5
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 23 IMYANLKPKEQLEFCYPHINYSCTYSPY 106
I+ +L L+ CY ++N SC SPY
Sbjct: 15 ILSRDLLSASSLQLCYENLNRSCVRSPY 42
>sp|P15916|PAP2_FOWPV Cap-specific mRNA (nucleoside-2'-O-)-methyltransferase (Poly(A)
polymerase regulatory subunit) (Poly(A) polymerase small
subunit) (PAP-S) (VP39)
Length = 308
Score = 27.7 bits (60), Expect = 8.4
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 38 LKPKEQLEFCYPHINYSCTYSPY--KTTICPVYKAF 139
++PK L+F YP+ Y Y Y K + P YK F
Sbjct: 251 IRPKIVLDFDYPNQKYDYFYMFYILKDIVLPTYKEF 286
>sp|P31911|HOXQ_RALEU Hydrogenase expression/formation protein hoxQ
Length = 282
Score = 27.7 bits (60), Expect = 8.4
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 122 PVYKAFDIKEDLNNCPAQLGAYLPPPNTKPKTIMCDTESKNNYEEYVDAL 271
P +A D D + P + Y PP +P+ I C T++++ +DAL
Sbjct: 13 PGSQAEDETLDYIHMPQGMSVYTPPVLPEPEQIACLTQAQSVLRAILDAL 62
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,859,906
Number of Sequences: 369166
Number of extensions: 782823
Number of successful extensions: 1813
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1813
length of database: 68,354,980
effective HSP length: 95
effective length of database: 50,805,155
effective search space used: 1676570115
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)