Planarian EST Database


Dr_sW_017_G04

BLASTX 2.2.12 [Aug-07-2005]

Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Dr_sW_017_G04
         (887 letters)

Database: Non-redundant SwissProt sequences 
           184,735 sequences; 68,354,980 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P41824|YBOXH_APLCA  Y-box factor homolog (APY1)                 86   1e-16
sp|Q9JKB3|DBPA_MOUSE  DNA-binding protein A (Cold shock doma...    82   2e-15
sp|P16989|DBPA_HUMAN  DNA-binding protein A (Cold shock doma...    82   2e-15
sp|Q62764|DBPA_RAT  DNA-binding protein A (Cold shock domain...    82   2e-15
sp|P21573|YBOX1_XENLA  Nuclease sensitive element binding pr...    82   3e-15
sp|P62960|YBOX1_MOUSE  Nuclease sensitive element binding pr...    80   6e-15
sp|P67809|YBOX1_HUMAN  Nuclease sensitive element binding pr...    80   6e-15
sp|Q06066|YBOX1_CHICK  Nuclease sensitive element binding pr...    80   6e-15
sp|P45441|YBX2B_XENLA  Y-box binding protein 2-B (Cytoplasmi...    80   1e-14
sp|P21574|YBX2A_XENLA  Y-box binding protein 2-A (Cytoplasmi...    79   1e-14
>sp|P41824|YBOXH_APLCA Y-box factor homolog (APY1)
          Length = 253

 Score = 86.3 bits (212), Expect = 1e-16
 Identities = 38/67 (56%), Positives = 55/67 (82%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ R+D +ED+F+HQ+AIVK+NP    +SVG+GE++ FD+V+G KGNEAANV+  +G  
Sbjct: 47  GFINRDDTKEDVFVHQTAIVKNNPRKYLRSVGDGEKVEFDVVEGEKGNEAANVTGPEGSN 106

Query: 183 VKGSEYA 203
           V+GS+YA
Sbjct: 107 VQGSKYA 113
>sp|Q9JKB3|DBPA_MOUSE DNA-binding protein A (Cold shock domain protein A) (Y-box protein
           3)
 sp|Q5PQD5|DBPA_XENLA DNA-binding protein A (Cold shock domain protein A)
          Length = 361

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 38/67 (56%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+  DG  
Sbjct: 97  GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVP 156

Query: 183 VKGSEYA 203
           V+GS YA
Sbjct: 157 VEGSRYA 163
>sp|P16989|DBPA_HUMAN DNA-binding protein A (Cold shock domain protein A) (Single-strand
           DNA binding protein NF-GMB)
          Length = 372

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 38/67 (56%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+  DG  
Sbjct: 105 GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVP 164

Query: 183 VKGSEYA 203
           V+GS YA
Sbjct: 165 VEGSRYA 171
>sp|Q62764|DBPA_RAT DNA-binding protein A (Cold shock domain protein A) (Muscle Y-box
           protein YB2) (Y-box binding protein-A) (RYB-A)
          Length = 361

 Score = 82.4 bits (202), Expect = 2e-15
 Identities = 38/67 (56%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+  DG  
Sbjct: 97  GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVP 156

Query: 183 VKGSEYA 203
           V+GS YA
Sbjct: 157 VEGSRYA 163
>sp|P21573|YBOX1_XENLA Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 303

 Score = 81.6 bits (200), Expect = 3e-15
 Identities = 40/77 (51%), Positives = 55/77 (71%), Gaps = 6/77 (7%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+  +G  
Sbjct: 51  GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPEGVP 110

Query: 183 VKGSEYAL------RYP 215
           V+GS+YA       RYP
Sbjct: 111 VQGSKYAADRNHYRRYP 127
>sp|P62960|YBOX1_MOUSE Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P62961|YBOX1_RAT Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 322

 Score = 80.5 bits (197), Expect = 6e-15
 Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+   G  
Sbjct: 71  GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 130

Query: 183 VKGSEYAL------RYP 215
           V+GS+YA       RYP
Sbjct: 131 VQGSKYAADRNHYRRYP 147
>sp|P67809|YBOX1_HUMAN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
 sp|P67808|YBOX1_BOVIN Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor) (YB-1) (CCAAT-binding
           transcription factor I subunit A) (CBF-A) (Enhancer
           factor I subunit A) (EFI-A) (DNA-binding protein B)
           (DBPB)
          Length = 324

 Score = 80.5 bits (197), Expect = 6e-15
 Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+   G  
Sbjct: 73  GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 132

Query: 183 VKGSEYAL------RYP 215
           V+GS+YA       RYP
Sbjct: 133 VQGSKYAADRNHYRRYP 149
>sp|Q06066|YBOX1_CHICK Nuclease sensitive element binding protein 1 (Y-box binding protein
           1) (Y-box transcription factor)
          Length = 321

 Score = 80.5 bits (197), Expect = 6e-15
 Identities = 40/77 (51%), Positives = 54/77 (70%), Gaps = 6/77 (7%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+   G  
Sbjct: 70  GFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 129

Query: 183 VKGSEYAL------RYP 215
           V+GS+YA       RYP
Sbjct: 130 VQGSKYAADRNHYRRYP 146
>sp|P45441|YBX2B_XENLA Y-box binding protein 2-B (Cytoplasmic RNA-binding protein p54)
           (mRNP3)
          Length = 324

 Score = 79.7 bits (195), Expect = 1e-14
 Identities = 37/67 (55%), Positives = 51/67 (76%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND++ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+   G  
Sbjct: 56  GFINRNDSKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 115

Query: 183 VKGSEYA 203
           VKGS +A
Sbjct: 116 VKGSRFA 122
>sp|P21574|YBX2A_XENLA Y-box binding protein 2-A (Cytoplasmic RNA-binding protein p56)
           (mRNP4)
          Length = 336

 Score = 79.3 bits (194), Expect = 1e-14
 Identities = 37/67 (55%), Positives = 50/67 (74%)
 Frame = +3

Query: 3   GFVCRNDNQEDIFIHQSAIVKSNPEHPRKSVGEGEEILFDIVKGAKGNEAANVSAIDGKC 182
           GF+ RND +ED+F+HQ+AI K+NP    +SVG+GE + FD+V+G KG EAANV+   G  
Sbjct: 56  GFINRNDTKEDVFVHQTAIKKNNPRKFLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVP 115

Query: 183 VKGSEYA 203
           VKGS +A
Sbjct: 116 VKGSRFA 122
  Database: Non-redundant SwissProt sequences
    Posted date:  Dec 6, 2005  7:40 AM
  Number of letters in database: 68,354,980
  Number of sequences in database:  184,735
  
  Database: swissprot.01
    Posted date:  Dec 6, 2005  8:18 AM
  Number of letters in database: 66,202,850
  Number of sequences in database:  184,431
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,626,767
Number of Sequences: 369166
Number of extensions: 1457362
Number of successful extensions: 3825
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3684
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3803
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 8886314050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)