Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_G01
(857 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab... 228 2e-59
sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (R... 228 2e-59
sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (... 227 3e-59
sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Ra... 226 5e-59
sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (... 226 5e-59
sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (... 226 6e-59
sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (... 226 6e-59
sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (... 226 6e-59
sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (R... 225 1e-58
sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (... 225 1e-58
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 228 bits (580), Expect = 2e-59
Identities = 105/170 (61%), Positives = 136/170 (80%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL+
Sbjct: 328 RKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLF 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 388 VPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2) (GDI-3)
Length = 445
Score = 228 bits (580), Expect = 2e-59
Identities = 105/170 (61%), Positives = 136/170 (80%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL+
Sbjct: 328 RKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLF 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
P D G +S++F+S +YDATTHFETTC D+ D+YKR TGSEFDF +++ K
Sbjct: 388 VPKDLGTDSQIFISRAYDATTHFETTCDDIKDIYKRMTGSEFDFEEMKRK 437
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (SMG p25A
GDI)
Length = 447
Score = 227 bits (579), Expect = 3e-59
Identities = 108/170 (63%), Positives = 131/170 (77%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP YV D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 388 EPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 226 bits (577), Expect = 5e-59
Identities = 107/170 (62%), Positives = 130/170 (76%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 388 EPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 226 bits (577), Expect = 5e-59
Identities = 107/170 (62%), Positives = 130/170 (76%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 388 EPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 226 bits (576), Expect = 6e-59
Identities = 107/170 (62%), Positives = 130/170 (76%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR GS FDF ++ K
Sbjct: 388 EPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAFDFENMKRK 437
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1) (XAP-4)
(Oligophrenin-2)
Length = 447
Score = 226 bits (576), Expect = 6e-59
Identities = 106/170 (62%), Positives = 131/170 (77%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 388 EPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 226 bits (576), Expect = 6e-59
Identities = 106/170 (62%), Positives = 131/170 (77%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G+ FDF ++ K
Sbjct: 388 EPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGTAFDFENMKRK 437
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta (Rab GDI beta) (Guanosine
diphosphate dissociation inhibitor 2) (GDI-2)
Length = 445
Score = 225 bits (574), Expect = 1e-58
Identities = 105/170 (61%), Positives = 135/170 (79%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGE+ARCK +ICDP YVKD+V+K+G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +S+ H+VA+ +IA+V+TTVETK P +E++P L LL IEQ F + SDL
Sbjct: 328 RKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLL 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
P D G ES++F+S +YDATTHFETTC D+ ++YKR TGSEFDF +++ K
Sbjct: 388 VPKDLGTESQIFISRTYDATTHFETTCDDIKNIYKRMTGSEFDFEEMKRK 437
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha (Rab GDI alpha) (Guanosine
diphosphate dissociation inhibitor 1) (GDI-1)
Length = 447
Score = 225 bits (574), Expect = 1e-58
Identities = 106/170 (62%), Positives = 130/170 (76%)
Frame = +2
Query: 2 VQAEGEVARCKAVICDPGYVKDKVKKIGSVIRAICILTHPVPNTNGALSTQIIIPQNQVN 181
V++EGEVARCK +ICDP Y+ D+V+K G VIR ICIL+HP+ NTN A S QIIIPQNQVN
Sbjct: 268 VKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVN 327
Query: 182 RNHDIYVCCVSYTHSVASNPNFIALVATTVETKNpreELKPGLNLLGKIEQIFYTESDLY 361
R DIYVC +SY H+VA+ +IA+ +TTVET +P +E++P L LL I+Q F SDLY
Sbjct: 328 RKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLY 387
Query: 362 EPIDDGVESRVFVSTSYDATTHFETTCRDVLDVYKRYTGSEFDFGKVQSK 511
EPIDDG ES+VF S SYDATTHFETTC D+ D+YKR G FDF ++ K
Sbjct: 388 EPIDDGCESQVFCSCSYDATTHFETTCNDIKDIYKRMAGMAFDFENMKRK 437
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,590,083
Number of Sequences: 369166
Number of extensions: 1987519
Number of successful extensions: 5831
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5603
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5828
length of database: 68,354,980
effective HSP length: 109
effective length of database: 48,218,865
effective search space used: 8486520240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)