Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_F22
(374 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with... 56 2e-08
sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with... 55 4e-08
sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with... 54 1e-07
sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with... 54 1e-07
sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with c... 54 1e-07
sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 52 6e-07
sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like ... 50 1e-06
sp|Q9H347|UBQL3_HUMAN Ubiquilin-3 49 3e-06
sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3 44 2e-04
sp|O74345|UCP3_SCHPO UBA-domain containing protein 3 37 0.018
>sp|Q9UHD9|UBQL2_HUMAN Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(hPLIC-2) (Ubiquitin-like product Chap1/Dsk2) (DSK2
homolog) (Chap1)
Length = 624
Score = 56.2 bits (134), Expect = 2e-08
Identities = 28/56 (50%), Positives = 37/56 (66%)
Frame = +2
Query: 104 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQFDP 271
AG N+ NPE + +LE + MGF NR+ANL+ALI T GD+NAA+ R+L P
Sbjct: 568 AGANAPQLPNPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQP 623
>sp|Q9UMX0|UBQL1_HUMAN Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
(hPLIC-1)
Length = 589
Score = 55.5 bits (132), Expect = 4e-08
Identities = 28/56 (50%), Positives = 39/56 (69%)
Frame = +2
Query: 104 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQFDP 271
AG+N + NPE + +LE ++ MGF NR+ANL+ALI T GD+NAA+ R+L P
Sbjct: 534 AGVNPQLQ-NPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQP 588
>sp|Q8R317|UBQL1_MOUSE Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 53.5 bits (127), Expect = 1e-07
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +2
Query: 104 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQFDP 271
AG+N + +PE + +LE ++ MGF NR+ANL+ALI T GD+NAA+ R+L P
Sbjct: 527 AGVNPQLQ-SPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQP 581
>sp|Q9QZM0|UBQL2_MOUSE Ubiquilin-2 (Protein linking IAP with cytoskeleton-2) (PLIC-2)
(Ubiquitin-like product Chap1/Dsk2) (DSK2 homolog)
(Chap1)
Length = 638
Score = 53.5 bits (127), Expect = 1e-07
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +2
Query: 131 NPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQFDP 271
NPE + +LE + MGF NR+ANL+ALI T GD+NAA+ R+L P
Sbjct: 591 NPEVRFQQQLEQLNAMGFLNREANLQALIATGGDINAAIERLLGSQP 637
>sp|Q9JJP9|UBQL1_RAT Ubiquilin-1 (Protein linking IAP with cytoskeleton-1) (PLIC-1)
Length = 582
Score = 53.5 bits (127), Expect = 1e-07
Identities = 27/56 (48%), Positives = 39/56 (69%)
Frame = +2
Query: 104 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQFDP 271
AG+N + +PE + +LE ++ MGF NR+ANL+ALI T GD+NAA+ R+L P
Sbjct: 527 AGVNPQLQ-SPEVRFQQQLEQLSAMGFLNREANLQALIATGGDINAAIERLLGSQP 581
>sp|Q9NRR5|UBQL4_HUMAN Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 601
Score = 51.6 bits (122), Expect = 6e-07
Identities = 25/52 (48%), Positives = 35/52 (67%)
Frame = +2
Query: 104 AGLNSAVGGNPEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRIL 259
AG ++ PE + +LE + MGF NR+ANL+ALI T GD+NAA+ R+L
Sbjct: 545 AGSGNSQVQTPEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 596
>sp|Q99NB8|UBQL4_MOUSE Ubiquilin-4 (Ataxin-1 ubiquitin-like interacting protein A1U)
Length = 596
Score = 50.4 bits (119), Expect = 1e-06
Identities = 23/42 (54%), Positives = 31/42 (73%)
Frame = +2
Query: 134 PEQLYSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRIL 259
PE + +LE + MGF NR+ANL+ALI T GD+NAA+ R+L
Sbjct: 550 PEVRFQQQLEQLNSMGFINREANLQALIATGGDINAAIERLL 591
>sp|Q9H347|UBQL3_HUMAN Ubiquilin-3
Length = 655
Score = 49.3 bits (116), Expect = 3e-06
Identities = 27/56 (48%), Positives = 36/56 (64%), Gaps = 5/56 (8%)
Frame = +2
Query: 110 LNSAVGGNPEQL-----YSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQ 262
L V NP+QL + +LE + MGF NR+ANL+ALI T GDV+AAV ++ Q
Sbjct: 599 LQDLVSTNPQQLQPEAHFQVQLEQLRSMGFLNREANLQALIATGGDVDAAVEKLRQ 654
>sp|Q8C5U9|UBQL3_MOUSE Ubiquilin-3
Length = 658
Score = 43.5 bits (101), Expect = 2e-04
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +2
Query: 110 LNSAVGGNPEQL-----YSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRI 256
L + NP+QL + +LE + MGF N +ANL+ALI T GDV+AAV ++
Sbjct: 602 LQALASTNPQQLQLEAHFRVQLEQLRAMGFLNLEANLQALIATEGDVDAAVEKL 655
>sp|O74345|UCP3_SCHPO UBA-domain containing protein 3
Length = 601
Score = 36.6 bits (83), Expect = 0.018
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +2
Query: 146 YSSELETMAQMGFPNRQANLRALIETFGDVNAAVNRILQ 262
Y+ L T+ MGF + N AL ET GDV A+ +I+Q
Sbjct: 158 YADSLSTLHDMGFSDDSVNTHALEETNGDVTRAIEKIVQ 196
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,122,268
Number of Sequences: 369166
Number of extensions: 697918
Number of successful extensions: 1451
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 68,354,980
effective HSP length: 91
effective length of database: 51,544,095
effective search space used: 1700955135
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)