Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_F18
(907 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor 222 1e-57
sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) ... 221 2e-57
sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathe... 211 2e-54
sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (C... 211 2e-54
sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathe... 210 4e-54
sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted ... 208 1e-53
sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine protei... 207 2e-53
sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted ... 207 2e-53
sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Catheps... 207 3e-53
sp|O35186|CATK_RAT Cathepsin K precursor 204 2e-52
>sp|Q24940|CATLP_FASHE Cathepsin L-like proteinase precursor
Length = 326
Score = 222 bits (566), Expect = 1e-57
Identities = 113/298 (37%), Positives = 172/298 (57%), Gaps = 6/298 (2%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N+K I++HNL+ DLG +++GLN+F+DM +EF++ L+ +
Sbjct: 47 NVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLT------------------EM 88
Query: 181 SRNDFITT------PNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNL 342
SR I + NN +PD DWRE G V+ V +Q N +AF+ G +EGQ
Sbjct: 89 SRASDILSHGVPYEANNRAVPDKIDWRESGYVTEVKDQGNCGSCWAFSTTGTMEGQYMKN 148
Query: 343 TKTLEILSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGSELDEDYPFVGYNSNCKYD 522
+T S+QQ++DCS +GN+ C SG ++ AY YL +G E + YP+ C+Y+
Sbjct: 149 ERTSISFSEQQLVDCSGPWGNNGC-SGGLMENAYQYLKQFGLETESSYPYTAVEGQCRYN 207
Query: 523 KSLATVKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNN 702
K L K G+ V G E +L N V P + A+D + F Y++GIY +CS
Sbjct: 208 KQLGVAKVTGYYTVHSGSEVELKNLVGARRPAAVAVDVESD-FMMYRSGIYQSQTCSPLR 266
Query: 703 VNHAVLVIGYGEESGQSFWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVPLLKK 876
VNHAVL +GYG + G +WI+KNSWG+ WG +GY++++R+ N+CGIAS+AS+P++ +
Sbjct: 267 VNHAVLAVGYGTQGGTDYWIVKNSWGTYWGERGYIRMARNRGNMCGIASLASLPMVAR 324
>sp|O60911|CATL2_HUMAN Cathepsin L2 precursor (Cathepsin V) (Cathepsin U)
Length = 334
Score = 221 bits (564), Expect = 2e-57
Identities = 117/293 (39%), Positives = 169/293 (57%), Gaps = 5/293 (1%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N+K I+ HN ++ GK F++ +N F DM +EF+ +
Sbjct: 55 NMKMIELHNGEYSQGKHGFTMAMNAFGDMTNEEFRQMM--------------GCFRNQKF 100
Query: 181 SRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEI 360
+ P + LP S DWR+KG V+PV NQ+ +AF+A GALEGQ F T L
Sbjct: 101 RKGKVFREPLFLDLPKSVDWRKKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVS 160
Query: 361 LSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNSNCKYDKSLAT 537
LS+Q ++DCS GN C +G +++A+ Y+ + G + +E YP+V + CKY +
Sbjct: 161 LSEQNLVDCSRPQGNQGC-NGGFMARAFQYVKENGGLDSEESYPYVAVDEICKYRPENSV 219
Query: 538 VKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHAV 717
GF V+ GKE LM AV +GPIS A+DA ++F+ YK+GIY + CSS N++H V
Sbjct: 220 ANDTGFTVVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPDCSSKNLDHGV 279
Query: 718 LVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
LV+GYG E S +W++KNSWG +WG GY+K+++D NN CGIA+ AS P
Sbjct: 280 LVVGYGFEGANSNNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYP 332
>sp|Q9GL24|CATL_CANFA Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 333
Score = 211 bits (538), Expect = 2e-54
Identities = 117/293 (39%), Positives = 166/293 (56%), Gaps = 5/293 (1%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N+K I+ HN ++ GK F++ +N F DM +EF+ +
Sbjct: 55 NMKMIELHNREYSQGKHGFTMAMNAFGDMTNEEFRQVMNGFQNQKH-------------- 100
Query: 181 SRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEI 360
+ P ++P S DWREKG V+PV NQ +AF+A GALEGQ F T L
Sbjct: 101 KKGKMFQEPLFAEIPKSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGKLVS 160
Query: 361 LSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNS-NCKYDKSLA 534
LS+Q ++DCS GN C +G ++ A+ Y+ D G + +E YP++G ++ C Y +
Sbjct: 161 LSEQNLVDCSRAQGNEGC-NGGLMDNAFRYVKDNGGLDSEESYPYLGRDTETCNYKPECS 219
Query: 535 TVKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHA 714
GF + + +E LM AV +GPIS AIDA +F+ YK+GIY D CSS +++H
Sbjct: 220 AANDTGFVDLPQ-REKALMKAVATLGPISVAIDAGHQSFQFYKSGIYFDPDCSSKDLDHG 278
Query: 715 VLVIGYGEE---SGQSFWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
VLV+GYG E S FWI+KNSWG +WG GY+K+++D NN CGIA+ AS P
Sbjct: 279 VLVVGYGFEGTDSNNKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGIATAASYP 331
>sp|Q9R014|CATJ_MOUSE Cathepsin J precursor (Cathepsin P) (Catlrp-p)
Length = 333
Score = 211 bits (537), Expect = 2e-54
Identities = 122/297 (41%), Positives = 168/297 (56%), Gaps = 9/297 (3%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N++ IK HN + LGK F++ +N+F D +EF+ +I ++
Sbjct: 54 NMRMIKLHNKENSLGKNNFTMKMNKFGDQTSEEFRKSIDNIPIPAA-------------- 99
Query: 181 SRNDFITTPN-----NIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLT 345
+T P+ +I LPD DWRE+G V+PV NQ +AFAAAGA+EGQ F T
Sbjct: 100 -----MTDPHAQNHVSIGLPDYKDWREEGYVTPVRNQGKCGSCWAFAAAGAIEGQMFWKT 154
Query: 346 KTLEILSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGSELDEDYPFVGYNSNCKYDK 525
L LS Q ++DCS GN C SG L + G E + YP+ G + C+Y
Sbjct: 155 GNLTPLSVQNLLDCSKTVGNKGCQSGTAHQAFEYVLKNKGLEAEATYPYEGKDGPCRYRS 214
Query: 526 SLATVKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNV 705
A+ + + E L AV +IGP+SAAIDAS ++F+ Y GIY + +CSS V
Sbjct: 215 ENASANITDYVNLP-PNELYLWVAVASIGPVSAAIDASHDSFRFYNGGIYYEPNCSSYFV 273
Query: 706 NHAVLVIGYGEE----SGQSFWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
NHAVLV+GYG E G ++W+IKNSWG +WGM GYM++++D NN CGIAS+AS P
Sbjct: 274 NHAVLVVGYGSEGDVKDGNNYWLIKNSWGEEWGMNGYMQIAKDHNNHCGIASLASYP 330
>sp|Q26636|CATL_SARPE Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 339
Score = 210 bits (535), Expect = 4e-54
Identities = 107/286 (37%), Positives = 168/286 (58%), Gaps = 2/286 (0%)
Frame = +1
Query: 13 IKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXLSRND 192
I +HN F GK + +GLN+++DM EF+ + L
Sbjct: 59 IAKHNQLFAQGKVSYKLGLNKYADMLHHEFKETM-----NGYNHTLRQLMRERTGLVGAT 113
Query: 193 FITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEILSKQ 372
+I P ++ +P S DWRE GAV+ V +Q + +AF++ GALEGQ+F L LS+Q
Sbjct: 114 YI-PPAHVTVPKSVDWREHGAVTGVKDQGHCGSCWAFSSTGALEGQHFRKAGVLVSLSEQ 172
Query: 373 QIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNSNCKYDKSLATVKPY 549
++DCS YGN+ C +G ++ A+ Y+ D G + ++ YP+ G + +C ++K+
Sbjct: 173 NLVDCSTKYGNNGC-NGGLMDNAFRYIKDNGGIDTEKSYPYEGIDDSCHFNKATIGATDT 231
Query: 550 GFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHAVLVIG 729
GF + G E + AV +GP+S AIDAS +F+ Y G+Y++ C N++H VLV+G
Sbjct: 232 GFVDIPEGDEEKMKKAVATMGPVSVAIDASHESFQLYSEGVYNEPECDEQNLDHGVLVVG 291
Query: 730 YG-EESGQSFWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
YG +ESG +W++KNSWG+ WG +GY+K++R+ NN CGIA+ +S P
Sbjct: 292 YGTDESGMDYWLVKNSWGTTWGEQGYIKMARNQNNQCGIATASSYP 337
>sp|P07711|CATL_HUMAN Cathepsin L precursor (Major excreted protein) (MEP) [Contains:
Cathepsin L heavy chain; Cathepsin L light chain]
Length = 333
Score = 208 bits (530), Expect = 1e-53
Identities = 116/293 (39%), Positives = 165/293 (56%), Gaps = 5/293 (1%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N+K I+ HN ++ GK F++ +N F DM +EF+ +
Sbjct: 55 NMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR------------- 101
Query: 181 SRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEI 360
+ P + P S DWREKG V+PV NQ +AF+A GALEGQ F T L
Sbjct: 102 -KGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLIS 160
Query: 361 LSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNSNCKYDKSLAT 537
LS+Q ++DCS GN C +G ++ A+ Y+ D G + +E YP+ +CKY+ +
Sbjct: 161 LSEQNLVDCSGPQGNEGC-NGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSV 219
Query: 538 VKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHAV 717
GF + + ++A LM AV +GPIS AIDA +F YK GIY + CSS +++H V
Sbjct: 220 ANDTGFVDIPKQEKA-LMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGV 278
Query: 718 LVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
LV+GYG ES +S +W++KNSWG +WGM GY+K+++D N CGIAS AS P
Sbjct: 279 LVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 331
>sp|Q95029|CATL_DROME Cathepsin L precursor (Cysteine proteinase 1) [Contains: Cathepsin
L heavy chain; Cathepsin L light chain]
Length = 341
Score = 207 bits (528), Expect = 2e-53
Identities = 105/288 (36%), Positives = 169/288 (58%), Gaps = 2/288 (0%)
Frame = +1
Query: 13 IKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXLSRND 192
I +HN +F GK F + +N+++D+ EF+ +
Sbjct: 60 IAKHNQRFAEGKVSFKLAVNKYADLLHHEFRQ----LMNGFNYTLHKQLRAADESFKGVT 115
Query: 193 FITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEILSKQ 372
FI+ P ++ LP S DWR KGAV+ V +Q + +AF++ GALEGQ+F + L LS+Q
Sbjct: 116 FIS-PAHVTLPKSVDWRTKGAVTAVKDQGHCGSCWAFSSTGALEGQHFRKSGVLVSLSEQ 174
Query: 373 QIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNSNCKYDKSLATVKPY 549
++DCS YGN+ C G ++ A+ Y+ D G + ++ YP+ + +C ++K
Sbjct: 175 NLVDCSTKYGNNGCNGG-LMDNAFRYIKDNGGIDTEKSYPYEAIDDSCHFNKGTVGATDR 233
Query: 550 GFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHAVLVIG 729
GF + +G E + AV +GP+S AIDAS +F+ Y G+Y++ C + N++H VLV+G
Sbjct: 234 GFTDIPQGDEKKMAEAVATVGPVSVAIDASHESFQFYSEGVYNEPQCDAQNLDHGVLVVG 293
Query: 730 YG-EESGQSFWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVPLL 870
+G +ESG+ +W++KNSWG+ WG KG++K+ R+ N CGIAS +S PL+
Sbjct: 294 FGTDESGEDYWLVKNSWGTTWGDKGFIKMLRNKENQCGIASASSYPLV 341
>sp|P06797|CATL_MOUSE Cathepsin L precursor (Major excreted protein) (MEP) (p39 cysteine
proteinase) [Contains: Cathepsin L heavy chain;
Cathepsin L light chain]
Length = 334
Score = 207 bits (528), Expect = 2e-53
Identities = 111/295 (37%), Positives = 172/295 (58%), Gaps = 5/295 (1%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N++ I+ HN ++ G+ FS+ +N F DM +EF+ +
Sbjct: 55 NMRMIQLHNGEYSNGQHGFSMEMNAFGDMTNEEFRQVVNGYRHQKH-------------- 100
Query: 181 SRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEI 360
+ P +K+P S DWREKG V+PV NQ +AF+A+G LEGQ F T L
Sbjct: 101 KKGRLFQEPLMLKIPKSVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLIS 160
Query: 361 LSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNSNCKYDKSLAT 537
LS+Q ++DCS GN C +G ++ A+ Y+ + G + +E YP+ + +CKY A
Sbjct: 161 LSEQNLVDCSHAQGNQGC-NGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEFAV 219
Query: 538 VKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHAV 717
GF + + ++A LM AV +GPIS A+DAS + + Y +GIY + +CSS N++H V
Sbjct: 220 ANDTGFVDIPQQEKA-LMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKNLDHGV 278
Query: 718 LVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVPLL 870
L++GYG E S +W++KNSWGS+WGM+GY+K+++D +N CG+A+ AS P++
Sbjct: 279 LLVGYGYEGTDSNKNKYWLVKNSWGSEWGMEGYIKIAKDRDNHCGLATAASYPVV 333
>sp|Q28944|CATL_PIG Cathepsin L precursor [Contains: Cathepsin L heavy chain; Cathepsin
L light chain]
Length = 334
Score = 207 bits (527), Expect = 3e-53
Identities = 116/294 (39%), Positives = 166/294 (56%), Gaps = 6/294 (2%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
N+K I+ HN ++ GK FS+ +N F DM +EF+ +
Sbjct: 55 NMKMIELHNQEYSQGKHGFSMAMNAFGDMTNEEFRQVMNGFQNQKH-------------- 100
Query: 181 SRNDFITTPNNIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLEI 360
+ +++P S DWREKG V+ V NQ +AF+A GALEGQ F T L
Sbjct: 101 KKGKVFHESLVLEVPKSVDWREKGYVTAVKNQGQCGSCWAFSATGALEGQMFRKTGKLVS 160
Query: 361 LSKQQIIDCSIYYGNSNCYSGCILSKAYAYLADYGS-ELDEDYPFVGYNSN-CKYDKSLA 534
LS+Q ++DCS GN C G ++ A+ Y+ D G + +E YP++G +N C Y +
Sbjct: 161 LSEQNLVDCSRPQGNQGCNGG-LMDNAFQYVKDNGGLDTEESYPYLGRETNSCTYKPECS 219
Query: 535 TVKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNHA 714
GF + + ++A LM AV +GPIS AIDA ++F+ YK+GIY D CSS +++H
Sbjct: 220 AANDTGFVDIPQREKA-LMKAVATVGPISVAIDAGHSSFQFYKSGIYYDPDCSSKDLDHG 278
Query: 715 VLVIGYGEESGQS----FWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
VLV+GYG E S FWI+KNSWG +WG GY+K+++D NN CGI++ AS P
Sbjct: 279 VLVVGYGFEGTDSNSSKFWIVKNSWGPEWGWNGYVKMAKDQNNHCGISTAASYP 332
>sp|O35186|CATK_RAT Cathepsin K precursor
Length = 329
Score = 204 bits (520), Expect = 2e-52
Identities = 115/291 (39%), Positives = 161/291 (55%), Gaps = 3/291 (1%)
Frame = +1
Query: 1 NLKFIKQHNLQFDLGKTKFSVGLNEFSDMNQKEFQSNILSVXXXXXXXXXXXXXXXXXXL 180
NLK I HNL+ LG + + +N DM +E + +
Sbjct: 53 NLKKISVHNLEASLGAHTYELAMNHLGDMTSEEVVQKMTGLRVPPSRSFS---------- 102
Query: 181 SRNDFITTPN-NIKLPDSWDWREKGAVSPVGNQRNNCCGYAFAAAGALEGQNFNLTKTLE 357
ND + TP ++PDS D+R+KG V+PV NQ +AF++AGALEGQ T L
Sbjct: 103 --NDTLYTPEWEGRVPDSIDYRKKGYVTPVKNQGQCGSCWAFSSAGALEGQLKKKTGKLL 160
Query: 358 ILSKQQIIDC-SIYYGNSNCYSGCILSKAYAYLADYGSELDED-YPFVGYNSNCKYDKSL 531
LS Q ++DC S YG Y ++ A+ Y+ G ED YP+VG + +C Y+ +
Sbjct: 161 ALSPQNLVDCVSENYGCGGGY----MTTAFQYVQQNGGIDSEDAYPYVGQDESCMYNATA 216
Query: 532 ATVKPYGFKYVSRGKEADLMNAVYNIGPISAAIDASPNTFKQYKTGIYDDTSCSSNNVNH 711
K G++ + G E L AV +GP+S +IDAS +F+ Y G+Y D +C +NVNH
Sbjct: 217 KAAKCRGYREIPVGNEKALKRAVARVGPVSVSIDASLTSFQFYSRGVYYDENCDRDNVNH 276
Query: 712 AVLVIGYGEESGQSFWIIKNSWGSKWGMKGYMKLSRDTNNLCGIASMASVP 864
AVLV+GYG + G +WIIKNSWG WG KGY+ L+R+ NN CGI ++AS P
Sbjct: 277 AVLVVGYGTQKGNKYWIIKNSWGESWGNKGYVLLARNKNNACGITNLASFP 327
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 89,893,376
Number of Sequences: 369166
Number of extensions: 1650009
Number of successful extensions: 4917
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4492
length of database: 68,354,980
effective HSP length: 110
effective length of database: 48,034,130
effective search space used: 9174518830
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)