Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Dr_sW_017_F17
(344 letters)
Database: Non-redundant SwissProt sequences
184,735 sequences; 68,354,980 total letters
Score E
Sequences producing significant alignments: (bits) Value
sp|Q02308|HLES_DROME Hairless protein 30 1.3
sp|Q84292|VE7_HPV6A Protein E7 29 3.8
sp|P06464|VE7_HPV6B Protein E7 29 3.8
sp|P41930|SSU1_YEAST Sulfite sensitivity protein SSU1 28 6.6
sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceo... 28 8.6
sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceo... 28 8.6
sp|Q60636|PRDM1_MOUSE PR-domain zinc finger protein 1 (Beta... 28 8.6
>sp|Q02308|HLES_DROME Hairless protein
Length = 1077
Score = 30.4 bits (67), Expect = 1.3
Identities = 13/23 (56%), Positives = 18/23 (78%)
Frame = +2
Query: 269 PGSNILSTSPVHISTRPNRISSS 337
PGS+ STSP +ST+P R++SS
Sbjct: 640 PGSSSSSTSPATLSTQPTRLNSS 662
>sp|Q84292|VE7_HPV6A Protein E7
Length = 98
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 171 IVACCCGCICSARTVIQ 221
IV CCCGC + R V+Q
Sbjct: 54 IVTCCCGCDSNVRLVVQ 70
>sp|P06464|VE7_HPV6B Protein E7
Length = 98
Score = 28.9 bits (63), Expect = 3.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +3
Query: 171 IVACCCGCICSARTVIQ 221
IV CCCGC + R V+Q
Sbjct: 54 IVTCCCGCDSNVRLVVQ 70
>sp|P41930|SSU1_YEAST Sulfite sensitivity protein SSU1
Length = 458
Score = 28.1 bits (61), Expect = 6.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 329 IYGLALWICALGWWIICLILADHSHSTRLSNYSTSSLNYRTSGTDAPTTT 180
IYG + +C W I+CL+ H +S ++ + + S + SGT+ T +
Sbjct: 392 IYG-GVCVC---WSILCLLCTLHEYSKKMLHAARKSSLFSESGTEKTTVS 437
>sp|Q15428|SF3A2_HUMAN Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 464
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 246 PGAVTVISQDQTYYPPAQCTYPQGQTVYPPPP 341
P A V Q +PPA +PQ V+P PP
Sbjct: 381 PAAPAVHPQAPGVHPPAPGMHPQAPGVHPQPP 412
>sp|Q62203|SF3A2_MOUSE Splicing factor 3A subunit 2 (Spliceosome associated protein 62)
(SAP 62) (SF3a66)
Length = 475
Score = 27.7 bits (60), Expect = 8.6
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 237 VAQPGAVTVISQDQTYYPPAQCTYPQGQTVYPPPP 341
V P + V Q +PPA +PQ V+PP P
Sbjct: 375 VHPPPSAGVHPQAPGVHPPAPAVHPQAPGVHPPAP 409
>sp|Q60636|PRDM1_MOUSE PR-domain zinc finger protein 1 (Beta-interferon gene
positive-regulatory domain I binding factor) (BLIMP-1)
Length = 856
Score = 27.7 bits (60), Expect = 8.6
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +2
Query: 107 RCWLYSWGNHWI 142
RCW++SW N W+
Sbjct: 7 RCWIFSWKNVWV 18
Database: Non-redundant SwissProt sequences
Posted date: Dec 6, 2005 7:40 AM
Number of letters in database: 68,354,980
Number of sequences in database: 184,735
Database: swissprot.01
Posted date: Dec 6, 2005 8:18 AM
Number of letters in database: 66,202,850
Number of sequences in database: 184,431
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,771,030
Number of Sequences: 369166
Number of extensions: 691113
Number of successful extensions: 2438
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2433
length of database: 68,354,980
effective HSP length: 82
effective length of database: 53,206,710
effective search space used: 1702614720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)